mRNA_Ecto-sp9_F_contig10223.249.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10223.249.1
Unique NamemRNA_Ecto-sp9_F_contig10223.249.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H8_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 9.890e-79
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 GQVVVSTKSGDGEATAATGGDVVRTSTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR 348
            GQVVV+TKSGDGEATAATGGDVVRTSTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR
Sbjct:  154 GQVVVATKSGDGEATAATGGDVVRTSTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR 269
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M4_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 7.480e-72
Identity = 107/118 (90.68%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 GQVVVSTKSGDGEATAATGGDV--VRTSTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR 348
            GQV+V+  S DGE TAATGGDV  V  STATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCV GKHASYDDPPEGGDGAWRSPLTGTLR
Sbjct:   59 GQVIVAANSRDGEDTAATGGDVHLVSASTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVNGKHASYDDPPEGGDGAWRSPLTGTLR 176
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZ08_VITBC)

HSP 1 Score: 114 bits (286), Expect = 6.530e-27
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   91 TCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTG 339
            TCR CK+ F P+ N   +C YH G+FSGRLNR+NDVDTS LE+FWSCCGE D  HPGCV  +H S+D+  +     WRSP+TG
Sbjct:  264 TCRQCKRSFVPEHNHSLACCYHAGVFSGRLNRVNDVDTSDLEFFWSCCGEYDREHPGCVVTRHMSFDEADDAT--TWRSPMTG 344
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H9F9_9ALVE)

HSP 1 Score: 107 bits (268), Expect = 6.570e-26
Identity = 47/86 (54.65%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   88 STCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTGTL 345
            STCR CK+ F    N +  C +HPG ++GRLNR+NDVDTS LE+FWSCCGE D  HPGC    H SYDD     +G   S LTG +
Sbjct:   92 STCRQCKKPFLKSQNAETGCVFHPGFYTGRLNRVNDVDTSDLEFFWSCCGEYDRGHPGCTNTHHVSYDD-----EGPTWSVLTGKI 172
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJI3_PORUM)

HSP 1 Score: 103 bits (257), Expect = 1.600e-24
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   94 CRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDD 294
            CR CKQQ++P+ N  GSC YH   + GRLNRI   +TSGLEYFW CCG+TD +  GCVK +H+SYDD
Sbjct:   89 CRQCKQQYDPEANEPGSCRYHGAQYRGRLNRIEPTETSGLEYFWHCCGDTDVNAEGCVKARHSSYDD 155
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLU8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.730e-22
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   85 TSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGL-EYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRS 327
            T TCR C +QFNP +N   +C++HPG+++GRL RI+D D SG  ++FWSCCG  +  HPGC    H S+DDPP    G W+S
Sbjct:   82 TKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGG-EREHPGCTHDHHRSFDDPP----GPWQS 158
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Hypothetical (protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIL7_9RHOD)

HSP 1 Score: 94.0 bits (232), Expect = 2.870e-21
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   94 CRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDD 294
            CR CK Q++P  N   SC  H G +SGRLNR+NDVDTS LEYFW+CCGE      GC  G H SYD+
Sbjct:   48 CRLCKGQYDPGQNTGRSCRRHSGYYSGRLNRVNDVDTSDLEYFWNCCGEESKHAHGCEWGHHVSYDE 114
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BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IN21_KLENI)

HSP 1 Score: 68.9 bits (167), Expect = 9.370e-12
Identity = 33/95 (34.74%), Postives = 45/95 (47.37%), Query Frame = 1 
Query:   40 ATAATGGDVVRTSTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNR----------INDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDD 294
            ATA  GG   R +  T  C+ CKQQ++P+ N   +C YH   + G   R          +   D   +  +W CCG  DP+ PGC    H SYD+
Sbjct:   15 ATAQAGGQTNRANLRT--CKQCKQQYDPESNHPRACKYHTAHYGGETRRKFESVYEGGTLTTADGGKITAYWHCCGNQDPTDPGCEAAPHRSYDE 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10223.249.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized9.890e-7999.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.480e-7290.68protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.530e-2759.04protein n=2 Tax=Vitrella brassicaformis TaxID=1169... [more]
Uncharacterized6.570e-2654.65protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169... [more]
Uncharacterized1.600e-2461.19protein n=1 Tax=Porphyra umbilicalis TaxID=2786 Re... [more]
Uncharacterized8.730e-2251.22protein n=1 Tax=Nannochloropsis gaditana TaxID=725... [more]
Hypothetical2.870e-2158.21protein n=1 Tax=Compsopogon caeruleus TaxID=31354 ... [more]
Uncharacterized9.370e-1234.74protein n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10223contigEcto-sp9_F_contig10223:3340..4530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue3.6e-63
Seed eggNOG ortholog2880.D7G2H8
EggNOG OGs2BDDZ@1,2S12C@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_005540.1
Exons2
Model size630
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10223.249.1prot_Ecto-sp9_F_contig10223.249.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10223 3617..4530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.1343093-UTR-Ecto-sp9_F_contig10223:3339..36161622928219.1343093-UTR-Ecto-sp9_F_contig10223:3339..3616Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10223 3340..3616 -
1692277799.8903093-UTR-Ecto-sp9_F_contig10223:3339..36161692277799.8903093-UTR-Ecto-sp9_F_contig10223:3339..3616Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10223 3340..3616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.1525953-CDS-Ecto-sp9_F_contig10223:3616..38181622928219.1525953-CDS-Ecto-sp9_F_contig10223:3616..3818Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10223 3617..3818 -
1692277799.9008436-CDS-Ecto-sp9_F_contig10223:3616..38181692277799.9008436-CDS-Ecto-sp9_F_contig10223:3616..3818Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10223 3617..3818 -
1622928219.1647756-CDS-Ecto-sp9_F_contig10223:4381..45301622928219.1647756-CDS-Ecto-sp9_F_contig10223:4381..4530Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10223 4382..4530 -
1692277799.9097252-CDS-Ecto-sp9_F_contig10223:4381..45301692277799.9097252-CDS-Ecto-sp9_F_contig10223:4381..4530Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10223 4382..4530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10223.249.1

>prot_Ecto-sp9_F_contig10223.249.1 ID=prot_Ecto-sp9_F_contig10223.249.1|Name=mRNA_Ecto-sp9_F_contig10223.249.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=117bp
GQVVVSTKSGDGEATAATGGDVVRTSTATSTCRNCKQQFNPDDNVDGSCS
YHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPP
EGGDGAWRSPLTGTLR*
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mRNA from alignment at Ecto-sp9_F_contig10223:3340..4530-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10223.249.1 ID=mRNA_Ecto-sp9_F_contig10223.249.1|Name=mRNA_Ecto-sp9_F_contig10223.249.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1191bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10223:3340..4530- (Ectocarpus species9 EcSCA_722f female)
GGACAAGTGGTAGTCTCAACAAAAAGCGGCGACGGTGAGGCTACAGCGGC
AACCGGAGGCGACGTAGTGAGAACCTCTACGGCCACGTCCACCTGCCGTA
ACTGCAAGCAACAATTCAACCCAGACGACAACGTGGACGGATCTTGCTCG
TGAGTTCTAGGCTGTGGGTCCGTCGGATGCGTGAGCTGTTAGCTGTTTAC
CTCCTGTTTGTTCGGGTGTACCGACGTGGTTGATGGTGTCCGCATGTCTT
GGGCAGAACCTGAGCGATGTGGATGGGCGCAGGGTTGTGTCGATGAGTCT
CTTCGACACGAACGGAAGAAGTTGGTGCTGGCCCTCGATGTTTTTTTTGC
CGGGACTTCGCGCGTGCTTGGATCCCAGCGTGTTTTTTAAAAGAACATAA
CAACATAGATGAGCTTGCCTGAAGACGGTTTCTTCGGCCCCCTTCGTTAC
TGAGGTTGTTTTTCGTCTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCCT
CTACCCCCCTCTTTTTCTCCCTGTCGACCTAACTGCCTGTCTGCCTCTCA
TTGTTTGTCCTGCCTCTGCTGGTTCTGTCTCCGCACCCACCCCCTGAACT
CGTTCCCCCCTCCATGCACTCGGGTGCTTTCGGACCAACTACAACACCAC
GCCACCGCTACCACCATCACCACCACCACCATCACCATCACCATCACCGC
AACAATAAGCAGATATCACCCGGGTCTATTCAGCGGGCGACTGAACCGTA
TCAACGACGTCGACACCTCCGGCCTGGAGTACTTCTGGTCTTGCTGCGGA
GAGACCGACCCTTCCCACCCGGGGTGCGTCAAGGGGAAACACGCTTCCTA
CGATGACCCCCCCGAGGGAGGGGATGGAGCGTGGAGATCCCCGCTAACCG
GCACCCTTCGGTAGTGGCGTGCCGCTGGTGATCACAGCGAGTTTAAACCG
GCCGCGCGGCAGTATAATACGCAGCCGTGTGCACCACACCCTCTACGGCG
GTGGATCATTTTTCTCTTGGCCGTCGGCTACATGCATCGTAGGCCACCGT
ATGATAGAAGCGTCGGCCCGCGGCCTGATATGTTGGTTGATTGATTCATC
ACCAAACTAAATAACGTACGAAGAAGTATATTTTATGCTATAGTGTTGTG
TGTGGTCGCTTGCTTGTCTGGTTGCTCTGTTTGCCTTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10223:3340..4530-

>mRNA_Ecto-sp9_F_contig10223.249.1 ID=mRNA_Ecto-sp9_F_contig10223.249.1|Name=mRNA_Ecto-sp9_F_contig10223.249.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10223:3340..4530- (Ectocarpus species9 EcSCA_722f female)
GGACAAGTGGTAGTCTCAACAAAAAGCGGCGACGGTGAGGCTACAGCGGC
AACCGGAGGCGACGTAGTGAGAACCTCTACGGCCACGTCCACCTGCCGTA
ACTGCAAGCAACAATTCAACCCAGACGACAACGTGGACGGATCTTGCTCG
GACAAGTGGTAGTCTCAACAAAAAGCGGCGACGGTGAGGCTACAGCGGCA
ACCGGAGGCGACGTAGTGAGAACCTCTACGGCCACGTCCACCTGCCGTAA
CTGCAAGCAACAATTCAACCCAGACGACAACGTGGACGGATCTTGCTCAT
ATCACCCGGGTCTATTCAGCGGGCGACTGAACCGTATCAACGACGTCGAC
ACCTCCGGCCTGGAGTACTTCTGGTCTTGCTGCGGAGAGACCGACCCTTC
CCACCCGGGGTGCGTCAAGGGGAAACACGCTTCCTACGATGACCCCCCCG
AGGGAGGGGATGGAGCGTGGAGATCCCCGCTAACCGGCACCCTTCGGTAG
ATATCACCCGGGTCTATTCAGCGGGCGACTGAACCGTATCAACGACGTCG
ACACCTCCGGCCTGGAGTACTTCTGGTCTTGCTGCGGAGAGACCGACCCT
TCCCACCCGGGGTGCGTCAAGGGGAAACACGCTTCCTACGATGACCCCCC
CGAGGGAGGGGATGGAGCGTGGAGATCCCCGCTAACCGGCACCCTTCGGT
AG
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