mRNA_Ecto-sp9_F_contig10213.241.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Similar (to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI) HSP 1 Score: 385 bits (988), Expect = 6.530e-120 Identity = 206/241 (85.48%), Postives = 208/241 (86.31%), Query Frame = 1
Query: 1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXX----------------------VGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
+MKNFLSLFPARPVRGLRE+PNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYA G VGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCM VNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGG GVPGPVHLNFMFRENLAPVEGAVR
Sbjct: 853 KMKNFLSLFPARPVRGLREMPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAVGFARAGPGRGXXXXXXXXXXXXXXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCM-VNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGXXXGVPGPVHLNFMFRENLAPVEGAVR 1092
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE) HSP 1 Score: 375 bits (963), Expect = 3.410e-118 Identity = 200/241 (82.99%), Postives = 204/241 (84.65%), Query Frame = 1
Query: 1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXX----------------------VGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
+MKNFLSLFPARP RGLRE+PNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYA G GALG+CAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCM VNLLGSRARLS+DVQCPTDEVSAACLLSDIDHAVSRALGGGG VPGPVHLNFMFRENLAPVEGAVR
Sbjct: 620 KMKNFLSLFPARPARGLREMPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAVGFARAGPGRGGRAHSXXXXXXXXXXXXXXXXXGALGICAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMCVNLLGSRARLSMDVQCPTDEVSAACLLSDIDHAVSRALGGGG---VPGPVHLNFMFRENLAPVEGAVR 857
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: MR_MLE (domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA) HSP 1 Score: 209 bits (532), Expect = 1.220e-58 Identity = 123/221 (55.66%), Postives = 144/221 (65.16%), Query Frame = 1
Query: 1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVRYT 663
+M NF+ +FP RP LR +PN+ +LW LVVEEL R GV HF + PGSRS PL A ARHP + HHDERGAGFY G + AV+ +SGTAVANLLPAA EA + +LLLTADRPPE R CG+NQT+ Q MF++ AR + DV CPT EV A+ LLSD+D+AVS A RG PGPVHLNFM RENLAP GAVR T
Sbjct: 519 KMANFVRMFP-RPSPPLRSLPNLATLWATLVVEELARNGVTHFVIAPGSRSTPLVTAAARHPDTTLMVHHDERGAGFYCLGYARARGRPA------AVIVTSGTAVANLLPAAVEAATDRVPLLLLTADRPPEQRDCGANQTVAQPD--MFLHF----ARWTKDVPCPTPEVLASSLLSDVDYAVSMA-----RGADPGPVHLNFMLRENLAPEGGAVRDT 721
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: ADC (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z971_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.720e-57 Identity = 129/236 (54.66%), Postives = 147/236 (62.29%), Query Frame = 1
Query: 1 QMKNFLSLF-----PARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIA-RHPSA------VSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVP-----GPVHLNFMFRENLAPVEGAVR 657
+MK LSLF PA LR +PNVN+L GAL EEL R GVR +CPGSRS PL A A R PSA + + HHDERGA F+A G GSG CAVVT+SGTAVANLLP A EA G +MLLLTADRPPE R G++QT+DQ C++V+LL + AR DV P D VSA LLSD+ HAVSRA G GPVHLN MFRENLAP GA+R
Sbjct: 180 KMKGMLSLFARAPAPAASAAALRRLPNVNALAGALAAEELARCGVRACVLCPGSRSTPLTHAAAPRAPSAAXXXXAMPLVHHDERGAAFFALGYAK----GSGGR-PCAVVTTSGTAVANLLPGAMEAGLGGHAMLLLTADRPPEARDVGADQTLDQV--CLYVHLLRNCARWFRDVAPPDDAVSACALLSDVSHAVSRASGSSXXXXXXXXXDAGPVHLNLMFRENLAPEGGAIR 408
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J7F3_GUITC) HSP 1 Score: 195 bits (495), Expect = 1.660e-55 Identity = 117/218 (53.67%), Postives = 135/218 (61.93%), Query Frame = 1
Query: 4 MKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
M+N L LF A P R L +PN+N LW L VEEL R GV FC+CPGSRS PLAVA++ + A S+ HDER AGFY G + A + +SGTAVANLLPAA EA GL MLLLTADRP ELR GSNQTI+QA + G R S D+ CP+D++ A LLSD+D AV RA GPVHLNF FRENLAP G VR
Sbjct: 1 MRNILQLF-ANPPRPLSSLPNINMLWAVLTVEELCRCGVTVFCLCPGSRSTPLAVAVSWNAKATSVVMHDERSAGFYCVGYARAKRKPA------ACIVTSGTAVANLLPAAVEASQQGLPMLLLTADRPFELRDNGSNQTIEQA------GIFGRYVRWSRDLCCPSDQIPANVLLSDVDFAVHRASSS-----PRGPVHLNFQFRENLAPDGGPVR 200
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Isochorismate (synthase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H9L0_9CRYP) HSP 1 Score: 198 bits (504), Expect = 6.720e-55 Identity = 117/219 (53.42%), Postives = 138/219 (63.01%), Query Frame = 1
Query: 1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
+M+N L LF A P R L +PN+N LW L VEEL R GV FC+CPGSRS PLAVA++ +P A ++ HDER AGFY G + A + +SGTAVANLLPAA EA GL MLLLTADRP ELR GSNQTI+QA + G R S D+ CP+D++ A LLSD+D+AV RA GPVHLNF FRENLAP G VR
Sbjct: 552 KMRNILQLF-ANPPRPLSSLPNINMLWAVLTVEELCRCGVTVFCLCPGSRSTPLAVAVSWNPKATAVVMHDERSAGFYCVGYARASKKPA------ACLVTSGTAVANLLPAAVEASQQGLPMLLLTADRPFELRDNGSNQTIEQA------GIFGRYVRWSRDICCPSDQIPANVLLSDVDYAVHRASSS-----PRGPVHLNFQFRENLAPDGGPVR 752
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PIL3_9DINO) HSP 1 Score: 192 bits (487), Expect = 1.190e-52 Identity = 111/226 (49.12%), Postives = 137/226 (60.62%), Query Frame = 1
Query: 1 QMKNFLSLFPARP-------VRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
+M+ F FP P + L +PN+N+LW LVVEE VRLGV+ F +C GSRS PL VA+ARHP A ++ HDERG F+A G A++ +SGTAVANLLP EA + + +LLLTADRP ELR G+NQTI Q + G+ R + D+ CPT EV A LLSD+D AV+ A G PGPVHLNF FRENLAP +GAVR
Sbjct: 501 KMRQFTEAFPEAPSVPRGLDIATLAALPNINTLWATLVVEECVRLGVKSFVICAGSRSTPLVVAVARHPHASAVVDHDERGGAFFALGWAKATRA------PVAIIVTSGTAVANLLPGVVEAAQSHVPLLLLTADRPSELRDTGANQTITQP------GIFGAHVRWAKDMPCPTTEVPAHALLSDVDLAVAHASGA--LADHPGPVHLNFAFRENLAPDKGAVR 712
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FDF8_NOCSC) HSP 1 Score: 189 bits (479), Expect = 1.500e-51 Identity = 116/223 (52.02%), Postives = 136/223 (60.99%), Query Frame = 1
Query: 1 QMKNFLSLFPARPVRGLRE----IPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
+M+ F FPA P GL PN+N+LW LVVEELVR GV HF +C GSRS PL VA+AR P+A + +HDERGA FYA G VG G V+ +SG+AVANLLP EA AA + ++LLTADRPPELR G+NQTI Q N+ G R D P+ E A LLSD+D AV A G + PGPVHLNF FRENLAP G VR
Sbjct: 531 KMRQFTEGFPAEPPGGLAASLSAAPNLNTLWATLVVEELVRSGVLHFVICAGSRSTPLVVAVARSPAATFVMNHDERGAAFYALGWAKA--VG----GPVGVIVTSGSAVANLLPGCLEAAAAQVPLVLLTADRPPELRDTGANQTITQP------NIFGRFVRWEKDFPPPSTEYPAHALLSDVDLAVGHATGSLSQN--PGPVHLNFCFRENLAPDAGPVR 739
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R202_9DINO) HSP 1 Score: 186 bits (473), Expect = 1.010e-50 Identity = 111/210 (52.86%), Postives = 132/210 (62.86%), Query Frame = 1
Query: 28 PARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
PA ++ LRE+PN+N+LW LV EE VR GVR+F +CPGSRS PL VA+ARHP A S +HDER A FYA G AV+ +SGTAVANLLP EA A + +LLLTADRP ELR G+NQTI Q + G R + D +CP+ + A LLSD+D AV+ A GG PGPVHLNF FRENLAP G VR
Sbjct: 602 PAAHLQHLREMPNLNTLWAHLVTEECVRSGVRNFVICPGSRSTPLVVAVARHPHAHSAINHDERAAAFYALGWAKAVEA------PVAVIVTSGTAVANLLPGVVEAAQAQVPLLLLTADRPSELRDTGANQTITQP------GIFGVYTRWAKDFECPSVQFPAHALLSDVDLAVAAA-GGQLSSRHPGPVHLNFCFRENLAPDAGPVR 798
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHZ5_9EUGL) HSP 1 Score: 169 bits (427), Expect = 8.670e-49 Identity = 106/213 (49.77%), Postives = 130/213 (61.03%), Query Frame = 1
Query: 19 SLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
SL P+R L E P +N+LW A+VVEELVRLGV HF +CPGSRS PL VA+ARHP+ + +DERGA +YA G G A C +VTS GTAVANLLP EA + + +L+L+ADRP +LRG +NQTI Q +F + D PT E LL+DID AV + +GG + G PVHLNF RENLAP G VR
Sbjct: 11 SLAAPGPMR-LGEAPTINALWSAVVVEELVRLGVTHFVICPGSRSTPLVVAVARHPATTFVVCNDERGAAYYAVGYGRATNGGK-ASAACLIVTS-GTAVANLLPGIVEAHRSSVPLLVLSADRPADLRGVDANQTIAQP--AIFQQFVAWEK----DFPAPTVEYPLEALLADIDFAVLK-MGGLDQSGYGQPVHLNFQLRENLAPEAGPVR 213 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10213.241.1 >prot_Ecto-sp9_F_contig10213.241.1 ID=prot_Ecto-sp9_F_contig10213.241.1|Name=mRNA_Ecto-sp9_F_contig10213.241.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=220bp MKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSback to top mRNA from alignment at Ecto-sp9_F_contig10213:537..2365- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10213.241.1 ID=mRNA_Ecto-sp9_F_contig10213.241.1|Name=mRNA_Ecto-sp9_F_contig10213.241.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1829bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10213:537..2365- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10213:537..2365- >mRNA_Ecto-sp9_F_contig10213.241.1 ID=mRNA_Ecto-sp9_F_contig10213.241.1|Name=mRNA_Ecto-sp9_F_contig10213.241.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10213:537..2365- (Ectocarpus species9 EcSCA_722f female)back to top |