mRNA_Ecto-sp9_F_contig10213.241.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10213.241.1
Unique NamemRNA_Ecto-sp9_F_contig10213.241.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Similar (to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 6.530e-120
Identity = 206/241 (85.48%), Postives = 208/241 (86.31%), Query Frame = 1
Query:    1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXX----------------------VGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            +MKNFLSLFPARPVRGLRE+PNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYA G                            VGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCM VNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGG   GVPGPVHLNFMFRENLAPVEGAVR
Sbjct:  853 KMKNFLSLFPARPVRGLREMPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAVGFARAGPGRGXXXXXXXXXXXXXXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCM-VNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGXXXGVPGPVHLNFMFRENLAPVEGAVR 1092          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 3.410e-118
Identity = 200/241 (82.99%), Postives = 204/241 (84.65%), Query Frame = 1
Query:    1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXX----------------------VGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            +MKNFLSLFPARP RGLRE+PNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYA G                               GALG+CAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCM VNLLGSRARLS+DVQCPTDEVSAACLLSDIDHAVSRALGGGG   VPGPVHLNFMFRENLAPVEGAVR
Sbjct:  620 KMKNFLSLFPARPARGLREMPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAVGFARAGPGRGGRAHSXXXXXXXXXXXXXXXXXGALGICAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMCVNLLGSRARLSMDVQCPTDEVSAACLLSDIDHAVSRALGGGG---VPGPVHLNFMFRENLAPVEGAVR 857          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: MR_MLE (domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.220e-58
Identity = 123/221 (55.66%), Postives = 144/221 (65.16%), Query Frame = 1
Query:    1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVRYT 663
            +M NF+ +FP RP   LR +PN+ +LW  LVVEEL R GV HF + PGSRS PL  A ARHP    + HHDERGAGFY  G        +      AV+ +SGTAVANLLPAA EA    + +LLLTADRPPE R CG+NQT+ Q    MF++     AR + DV CPT EV A+ LLSD+D+AVS A     RG  PGPVHLNFM RENLAP  GAVR T
Sbjct:  519 KMANFVRMFP-RPSPPLRSLPNLATLWATLVVEELARNGVTHFVIAPGSRSTPLVTAAARHPDTTLMVHHDERGAGFYCLGYARARGRPA------AVIVTSGTAVANLLPAAVEAATDRVPLLLLTADRPPEQRDCGANQTVAQPD--MFLHF----ARWTKDVPCPTPEVLASSLLSDVDYAVSMA-----RGADPGPVHLNFMLRENLAPEGGAVRDT 721          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: ADC (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z971_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.720e-57
Identity = 129/236 (54.66%), Postives = 147/236 (62.29%), Query Frame = 1
Query:    1 QMKNFLSLF-----PARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIA-RHPSA------VSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVP-----GPVHLNFMFRENLAPVEGAVR 657
            +MK  LSLF     PA     LR +PNVN+L GAL  EEL R GVR   +CPGSRS PL  A A R PSA      + + HHDERGA F+A G       GSG    CAVVT+SGTAVANLLP A EA   G +MLLLTADRPPE R  G++QT+DQ   C++V+LL + AR   DV  P D VSA  LLSD+ HAVSRA G             GPVHLN MFRENLAP  GA+R
Sbjct:  180 KMKGMLSLFARAPAPAASAAALRRLPNVNALAGALAAEELARCGVRACVLCPGSRSTPLTHAAAPRAPSAAXXXXAMPLVHHDERGAAFFALGYAK----GSGGR-PCAVVTTSGTAVANLLPGAMEAGLGGHAMLLLTADRPPEARDVGADQTLDQV--CLYVHLLRNCARWFRDVAPPDDAVSACALLSDVSHAVSRASGSSXXXXXXXXXDAGPVHLNLMFRENLAPEGGAIR 408          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J7F3_GUITC)

HSP 1 Score: 195 bits (495), Expect = 1.660e-55
Identity = 117/218 (53.67%), Postives = 135/218 (61.93%), Query Frame = 1
Query:    4 MKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            M+N L LF A P R L  +PN+N LW  L VEEL R GV  FC+CPGSRS PLAVA++ +  A S+  HDER AGFY  G        +      A + +SGTAVANLLPAA EA   GL MLLLTADRP ELR  GSNQTI+QA       + G   R S D+ CP+D++ A  LLSD+D AV RA          GPVHLNF FRENLAP  G VR
Sbjct:    1 MRNILQLF-ANPPRPLSSLPNINMLWAVLTVEELCRCGVTVFCLCPGSRSTPLAVAVSWNAKATSVVMHDERSAGFYCVGYARAKRKPA------ACIVTSGTAVANLLPAAVEASQQGLPMLLLTADRPFELRDNGSNQTIEQA------GIFGRYVRWSRDLCCPSDQIPANVLLSDVDFAVHRASSS-----PRGPVHLNFQFRENLAPDGGPVR 200          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Isochorismate (synthase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H9L0_9CRYP)

HSP 1 Score: 198 bits (504), Expect = 6.720e-55
Identity = 117/219 (53.42%), Postives = 138/219 (63.01%), Query Frame = 1
Query:    1 QMKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            +M+N L LF A P R L  +PN+N LW  L VEEL R GV  FC+CPGSRS PLAVA++ +P A ++  HDER AGFY  G        +      A + +SGTAVANLLPAA EA   GL MLLLTADRP ELR  GSNQTI+QA       + G   R S D+ CP+D++ A  LLSD+D+AV RA          GPVHLNF FRENLAP  G VR
Sbjct:  552 KMRNILQLF-ANPPRPLSSLPNINMLWAVLTVEELCRCGVTVFCLCPGSRSTPLAVAVSWNPKATAVVMHDERSAGFYCVGYARASKKPA------ACLVTSGTAVANLLPAAVEASQQGLPMLLLTADRPFELRDNGSNQTIEQA------GIFGRYVRWSRDICCPSDQIPANVLLSDVDYAVHRASSS-----PRGPVHLNFQFRENLAPDGGPVR 752          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PIL3_9DINO)

HSP 1 Score: 192 bits (487), Expect = 1.190e-52
Identity = 111/226 (49.12%), Postives = 137/226 (60.62%), Query Frame = 1
Query:    1 QMKNFLSLFPARP-------VRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            +M+ F   FP  P       +  L  +PN+N+LW  LVVEE VRLGV+ F +C GSRS PL VA+ARHP A ++  HDERG  F+A G               A++ +SGTAVANLLP   EA  + + +LLLTADRP ELR  G+NQTI Q        + G+  R + D+ CPT EV A  LLSD+D AV+ A G       PGPVHLNF FRENLAP +GAVR
Sbjct:  501 KMRQFTEAFPEAPSVPRGLDIATLAALPNINTLWATLVVEECVRLGVKSFVICAGSRSTPLVVAVARHPHASAVVDHDERGGAFFALGWAKATRA------PVAIIVTSGTAVANLLPGVVEAAQSHVPLLLLTADRPSELRDTGANQTITQP------GIFGAHVRWAKDMPCPTTEVPAHALLSDVDLAVAHASGA--LADHPGPVHLNFAFRENLAPDKGAVR 712          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FDF8_NOCSC)

HSP 1 Score: 189 bits (479), Expect = 1.500e-51
Identity = 116/223 (52.02%), Postives = 136/223 (60.99%), Query Frame = 1
Query:    1 QMKNFLSLFPARPVRGLRE----IPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            +M+ F   FPA P  GL       PN+N+LW  LVVEELVR GV HF +C GSRS PL VA+AR P+A  + +HDERGA FYA G      VG    G   V+ +SG+AVANLLP   EA AA + ++LLTADRPPELR  G+NQTI Q       N+ G   R   D   P+ E  A  LLSD+D AV  A G   +   PGPVHLNF FRENLAP  G VR
Sbjct:  531 KMRQFTEGFPAEPPGGLAASLSAAPNLNTLWATLVVEELVRSGVLHFVICAGSRSTPLVVAVARSPAATFVMNHDERGAAFYALGWAKA--VG----GPVGVIVTSGSAVANLLPGCLEAAAAQVPLVLLTADRPPELRDTGANQTITQP------NIFGRFVRWEKDFPPPSTEYPAHALLSDVDLAVGHATGSLSQN--PGPVHLNFCFRENLAPDAGPVR 739          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R202_9DINO)

HSP 1 Score: 186 bits (473), Expect = 1.010e-50
Identity = 111/210 (52.86%), Postives = 132/210 (62.86%), Query Frame = 1
Query:   28 PARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            PA  ++ LRE+PN+N+LW  LV EE VR GVR+F +CPGSRS PL VA+ARHP A S  +HDER A FYA G               AV+ +SGTAVANLLP   EA  A + +LLLTADRP ELR  G+NQTI Q        + G   R + D +CP+ +  A  LLSD+D AV+ A GG      PGPVHLNF FRENLAP  G VR
Sbjct:  602 PAAHLQHLREMPNLNTLWAHLVTEECVRSGVRNFVICPGSRSTPLVVAVARHPHAHSAINHDERAAAFYALGWAKAVEA------PVAVIVTSGTAVANLLPGVVEAAQAQVPLLLLTADRPSELRDTGANQTITQP------GIFGVYTRWAKDFECPSVQFPAHALLSDVDLAVAAA-GGQLSSRHPGPVHLNFCFRENLAPDAGPVR 798          
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHZ5_9EUGL)

HSP 1 Score: 169 bits (427), Expect = 8.670e-49
Identity = 106/213 (49.77%), Postives = 130/213 (61.03%), Query Frame = 1
Query:   19 SLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRSAPLAVAIARHPSAVSISHHDERGAGFYAAGXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMFVNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPVHLNFMFRENLAPVEGAVR 657
            SL    P+R L E P +N+LW A+VVEELVRLGV HF +CPGSRS PL VA+ARHP+   +  +DERGA +YA G       G  A   C +VTS GTAVANLLP   EA  + + +L+L+ADRP +LRG  +NQTI Q    +F   +        D   PT E     LL+DID AV + +GG  + G   PVHLNF  RENLAP  G VR
Sbjct:   11 SLAAPGPMR-LGEAPTINALWSAVVVEELVRLGVTHFVICPGSRSTPLVVAVARHPATTFVVCNDERGAAYYAVGYGRATNGGK-ASAACLIVTS-GTAVANLLPGIVEAHRSSVPLLVLSADRPADLRGVDANQTIAQP--AIFQQFVAWEK----DFPAPTVEYPLEALLADIDFAVLK-MGGLDQSGYGQPVHLNFQLRENLAPEAGPVR 213          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10213.241.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similar6.530e-12085.48to Isochorismate Synthase n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.410e-11882.99protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
MR_MLE1.220e-5855.66domain-containing protein n=6 Tax=Monodopsidaceae ... [more]
ADC1.720e-5754.66synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
Uncharacterized1.660e-5553.67protein n=1 Tax=Guillardia theta (strain CCMP2712)... [more]
Isochorismate6.720e-5553.42synthase (Fragment) n=1 Tax=Hanusia phi TaxID=3032... [more]
Hypothetical1.190e-5249.12protein (Fragment) n=1 Tax=Brandtodinium nutricula... [more]
Hypothetical1.500e-5152.02protein (Fragment) n=1 Tax=Noctiluca scintillans T... [more]
Hypothetical1.010e-5052.86protein n=1 Tax=Alexandrium monilatum TaxID=311494... [more]
Hypothetical8.670e-4949.77protein (Fragment) n=1 Tax=Eutreptiella gymnastica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10213contigEcto-sp9_F_contig10213:537..2365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score385.2
Seed ortholog evalue2.1e-104
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size663
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10213.241.1prot_Ecto-sp9_F_contig10213.241.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10213 537..2362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928217.287243-CDS-Ecto-sp9_F_contig10213:536..7461622928217.287243-CDS-Ecto-sp9_F_contig10213:536..746Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 537..746 -
1692277799.4552066-CDS-Ecto-sp9_F_contig10213:536..7461692277799.4552066-CDS-Ecto-sp9_F_contig10213:536..746Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 537..746 -
1622928217.3174667-CDS-Ecto-sp9_F_contig10213:1396..16121622928217.3174667-CDS-Ecto-sp9_F_contig10213:1396..1612Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 1397..1612 -
1692277799.4679296-CDS-Ecto-sp9_F_contig10213:1396..16121692277799.4679296-CDS-Ecto-sp9_F_contig10213:1396..1612Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 1397..1612 -
1622928217.335458-CDS-Ecto-sp9_F_contig10213:1678..17361622928217.335458-CDS-Ecto-sp9_F_contig10213:1678..1736Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 1679..1736 -
1692277799.4771125-CDS-Ecto-sp9_F_contig10213:1678..17361692277799.4771125-CDS-Ecto-sp9_F_contig10213:1678..1736Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 1679..1736 -
1622928217.3523805-CDS-Ecto-sp9_F_contig10213:2186..23621622928217.3523805-CDS-Ecto-sp9_F_contig10213:2186..2362Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 2187..2362 -
1692277799.4854848-CDS-Ecto-sp9_F_contig10213:2186..23621692277799.4854848-CDS-Ecto-sp9_F_contig10213:2186..2362Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10213 2187..2362 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928217.3662956-UTR-Ecto-sp9_F_contig10213:2362..23651622928217.3662956-UTR-Ecto-sp9_F_contig10213:2362..2365Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10213 2363..2365 -
1692277799.4932718-UTR-Ecto-sp9_F_contig10213:2362..23651692277799.4932718-UTR-Ecto-sp9_F_contig10213:2362..2365Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10213 2363..2365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10213.241.1

>prot_Ecto-sp9_F_contig10213.241.1 ID=prot_Ecto-sp9_F_contig10213.241.1|Name=mRNA_Ecto-sp9_F_contig10213.241.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=220bp
MKNFLSLFPARPVRGLREIPNVNSLWGALVVEELVRLGVRHFCVCPGSRS
APLAVAIARHPSAVSISHHDERGAGFYAAGGGGGGGVGSGALGMCAVVTS
SGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQARCCMF
VNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGGRGGVPGPV
HLNFMFRENLAPVEGAVRYT
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mRNA from alignment at Ecto-sp9_F_contig10213:537..2365-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10213.241.1 ID=mRNA_Ecto-sp9_F_contig10213.241.1|Name=mRNA_Ecto-sp9_F_contig10213.241.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1829bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10213:537..2365- (Ectocarpus species9 EcSCA_722f female)
CAGATGAAGAATTTTCTTTCGCTGTTCCCCGCGCGGCCGGTGAGGGGGCT CCGTGAAATTCCCAACGTTAACTCCCTCTGGGGCGCCCTCGTGGTGGAGG AGCTGGTGCGGCTGGGGGTCCGACACTTCTGCGTTTGTCCTGGGTCTCGC TCTGCTCCCCTGGCCGTGGCGATTGCCAGGTAAAACGGCGACAGTAGCGT GGGAGTAGAAGAGGATTTACGGTAGTGTGGGAGCGGAGAAGACATCACTG CTCGCTGTTTTCGCGAGAGAGACAAGACACTTTAGTCAGCCCGTTGTTCA GAGTATTGTGGGTTCTCCTCAGCCCACGTGGTGCGCGTCCGGTTATGATG GTGGGAATCCGGCGCTCTCTCTCTCTCTCTTTCTCTCTCTCGTTTATTGA TTGCCCGCAAGAATTGGGTCGTCGTTTGCGATTGTTTCTTGTCTCGAAAC CAACACACAAAAAATACTTACCTGACCATAACCGTTAGCCGCATCCCCCC CCCCCCCCCGCGTGTGCACATGCTTGGTCATCTCGCGTCGCGTTCATGGT CTAACAACTAACAACTAAGGCGCGCAAAACATGGGTACCCTTCGCGCGCA CGCCTTTATCCGGCCGTTTTCTCTCCCAGGCATCCATCAGCGGTTTCGAT ATCTCACCACGACGAACGCGGAGCGGGTTTCTACGCCGTAGGCTTTGCTC GCGCGGGGCCGGGAAGGGGGGGCGGGGCGCACTCGTCCTCCACGTCTGAC AAGGCCGGCGGCGGTGGCGGCGGCGGTGTGGGTAGTGGGGCGCTGGGGAT GTGCGCCGTTGTGACCAGCTCCGGCACGGCGGTGGCGAACCTGTTGCCGG CCGCGGCGGAGGCGGACGCGGCGGGATTGTCGATGTTGCTGCTCACGGCG GACAGGCCGCCGGAGCTGCGGGGGTGCGGCAGCAACCAGACCATTGATCA GGCGAGATGCTGCATGTTTGTGTGTGTGTGAGTGTCTTGTGCGTTTGTTT TGGCTATGGCGTCCACCGGCTGAACATATGAATTGTGTGCGTGGTGGTTG TTTTTTTAGAATCGACTGCGCCAACCGGCTGACCTCCAGAAAAAATACAT CGGCGGGATAAATAAGTGTTTGTGTGTGTCCGCTTACGAGCAACGGCAGA GTAAACCTGCTGACCAATGAAAGTACGCCACTCTGATTTAACGGATTAAG AATAGTGGTGTGTGCGTGTACTAACGGGCGCCGGCCGAAAAAAAACGGCT GACCAATGCAAAGACGTCCTCTTCAGTGGCGCAGGAAACGCTGTCTACTC TGCGGTGCTCCTCGCGAGGGGCTATCGATTTGTGTTATTATCCCAGGCTA TATGCATACGTAGTTCAAAGCCTTTTCCCCACGCCTATGTACTTCAAAGC CCTTTCCCTAAGCGCGACGTGTCGCTACACCTATCGTCGTGCGTTTGTTA ACCCAGGCTATATATATAACCTTCAAAGAGCCTTTTTTTTGTTACCCCGC CGGCGCTCATCCTTGCCTCCGCCGAATGTGCTTCTTCTTCTTCTTCTTCT TCTTCGCTCGCCATGTGGTCTGGTCTCAACCCCGAACCCGTCATCGTCGT CGCCGTCGTCGTCGTCTAGGTTAACCTTCTTGGCTCGCGCGCGAGACTGT CTCTGGACGTGCAGTGCCCCACGGACGAAGTGAGCGCGGCCTGTCTGCTC TCCGACATCGACCACGCCGTGTCGAGAGCGCTGGGAGGGGGGGGGAGAGG GGGGGTCCCCGGGCCGGTGCACCTGAACTTCATGTTCCGGGAGAACTTGG CTCCTGTGGAAGGGGCAGTCAGGTATACA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10213:537..2365-

>mRNA_Ecto-sp9_F_contig10213.241.1 ID=mRNA_Ecto-sp9_F_contig10213.241.1|Name=mRNA_Ecto-sp9_F_contig10213.241.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10213:537..2365- (Ectocarpus species9 EcSCA_722f female)
ATGAAGAATTTTCTTTCGCTGTTCCCCGCGCGGCCGGTGAGGGGGCTCCG
TGAAATTCCCAACGTTAACTCCCTCTGGGGCGCCCTCGTGGTGGAGGAGC
TGGTGCGGCTGGGGGTCCGACACTTCTGCGTTTGTCCTGGGTCTCGCTCT
GCTCCCCTGGCCGTGGCGATTGCCAGATGAAGAATTTTCTTTCGCTGTTC
CCCGCGCGGCCGGTGAGGGGGCTCCGTGAAATTCCCAACGTTAACTCCCT
CTGGGGCGCCCTCGTGGTGGAGGAGCTGGTGCGGCTGGGGGTCCGACACT
TCTGCGTTTGTCCTGGGTCTCGCTCTGCTCCCCTGGCCGTGGCGATTGCC
AGGCATCCATCAGCGGTTTCGATATCTCACCACGACGAACGCGGAGCGGG
TTTCTACGCCGCATCCATCAGCGGTTTCGATATCTCACCACGACGAACGC
GGAGCGGGTTTCTACGCCGCCGGCGGCGGTGGCGGCGGCGGTGTGGGTAG
TGGGGCGCTGGGGATGTGCGCCGTTGTGACCAGCTCCGGCACGGCGGTGG
CGAACCTGTTGCCGGCCGCGGCGGAGGCGGACGCGGCGGGATTGTCGATG
TTGCTGCTCACGGCGGACAGGCCGCCGGAGCTGCGGGGGTGCGGCAGCAA
CCAGACCATTGATCAGGCGAGATGCTGCATGTTTGCCGGCGGCGGTGGCG
GCGGCGGTGTGGGTAGTGGGGCGCTGGGGATGTGCGCCGTTGTGACCAGC
TCCGGCACGGCGGTGGCGAACCTGTTGCCGGCCGCGGCGGAGGCGGACGC
GGCGGGATTGTCGATGTTGCTGCTCACGGCGGACAGGCCGCCGGAGCTGC
GGGGGTGCGGCAGCAACCAGACCATTGATCAGGCGAGATGCTGCATGTTT
GTTAACCTTCTTGGCTCGCGCGCGAGACTGTCTCTGGACGTGCAGTGCCC
CACGGACGAAGTGAGCGCGGCCTGTCTGCTCTCCGACATCGACCACGCCG
TGTCGAGAGCGCTGGGAGGGGGGGGGAGAGGGGGGGTCCCCGGGCCGGTG
CACCTGAACTTCATGTTCCGGGAGAACTTGGCTCCTGTGGAAGGGGCAGT
CAGGTATACAGTTAACCTTCTTGGCTCGCGCGCGAGACTGTCTCTGGACG
TGCAGTGCCCCACGGACGAAGTGAGCGCGGCCTGTCTGCTCTCCGACATC
GACCACGCCGTGTCGAGAGCGCTGGGAGGGGGGGGGAGAGGGGGGGTCCC
CGGGCCGGTGCACCTGAACTTCATGTTCCGGGAGAACTTGGCTCCTGTGG
AAGGGGCAGTCAGGTATACA
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