mRNA_Ecto-sp9_F_contig10209.235.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10209.235.1
Unique NamemRNA_Ecto-sp9_F_contig10209.235.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10209.235.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC13_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 1.170e-122
Identity = 233/297 (78.45%), Postives = 245/297 (82.49%), Query Frame = 1 
Query:    1 MANLVPTLSYVPFEVARTCEQTPGTREARAKCDQLTTAIANAVNNAPEEDVLLFVKSHMNDLLEFLTREREVARGMAKAVLDKAPSARAAARWLAIMHTSRELMWVARTLVEYRRAMTFAERDVEEAVHWLEARAAPLPCACVLLGTLEDGDNEGEAYVPPEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------GVQGQEATPTEGGKEAVGQAATPAVPNSQTTEKVQEVAGCGGGSSQQGSGAAPRGHLSFLTNTAGVASAARPAKRPKRQCN 822
            MANLVPTLSYV FEVARTCE+TPGTR ARAKC+QLT AIA+AVNN  E +VLLFVKS +NDL E L REREVARGM K V+DKAPSA AAARWL IMHTSRELMWVARTLVEYRRAMTF  RDVEEAVHWLEARA+PLP ACVLLGTLED DNEGEAYVPP+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXX                       G+QGQ ATP EGGK+AVGQAA PAVPN QTTEKVQEVAGC GGSSQ GSGAAPRGHLS LTN AG ASAARPAKRPKRQC+
Sbjct:    1 MANLVPTLSYVSFEVARTCEETPGTRAARAKCEQLTAAIADAVNNVAEAEVLLFVKS-LNDLPELLAREREVARGMVKTVMDKAPSAGAAARWLIIMHTSRELMWVARTLVEYRRAMTFESRDVEEAVHWLEARASPLPRACVLLGTLEDDDNEGEAYVPPKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQGQGATPAEGGKKAVGQAAAPAVPNPQTTEKVQEVAGCEGGSSQ-GSGAAPRGHLSSLTNAAGAASAARPAKRPKRQCD 295
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BLAST of mRNA_Ecto-sp9_F_contig10209.235.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD96_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.910e-73
Identity = 155/181 (85.64%), Postives = 160/181 (88.40%), Query Frame = 1 
Query:  175 MNDLLEFLTREREVARGMAKAVLDKAPSARAAARWLAIMHTSRELMWVARTLVEYRRAMTFAERDVEEAVHWLEARAAPLPCACVLLGTLEDGDNEGEAYVPPEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQGQEATPTEGGKEAVGQAATPAVPNSQTTEKVQEVAGCGGGSSQ 717
            MNDL EFLTREREVARGMAKAVLDKAPSA AAARWL IMHTSRELMWVA TLVEYRRAMTF  RDVEEAVHWLEARA PLP A VLLGTLED DN GEAYVPP+ + XXXXXXXXXXXXXXXXXXXXXXXXXXX G+ GQ ATP EGGK+ VGQAA PAVPN QTTEKVQE AGCGGG+SQ
Sbjct:    1 MNDLQEFLTREREVARGMAKAVLDKAPSAGAAARWLTIMHTSRELMWVAGTLVEYRRAMTFESRDVEEAVHWLEARATPLPLARVLLGTLEDDDNAGEAYVPPDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLHGQAATPAEGGKKVVGQAAAPAVPNPQTTEKVQEDAGCGGGTSQ 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10209.235.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.170e-12278.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.910e-7385.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10209contigEcto-sp9_F_contig10209:65..1723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004050.1
Exons3
Model size825
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10209.235.1prot_Ecto-sp9_F_contig10209.235.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10209 65..1723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928216.35132-CDS-Ecto-sp9_F_contig10209:64..1721622928216.35132-CDS-Ecto-sp9_F_contig10209:64..172Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10209 65..172 -
1692277799.0324047-CDS-Ecto-sp9_F_contig10209:64..1721692277799.0324047-CDS-Ecto-sp9_F_contig10209:64..172Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10209 65..172 -
1622928216.370156-CDS-Ecto-sp9_F_contig10209:372..9331622928216.370156-CDS-Ecto-sp9_F_contig10209:372..933Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10209 373..933 -
1692277799.0420306-CDS-Ecto-sp9_F_contig10209:372..9331692277799.0420306-CDS-Ecto-sp9_F_contig10209:372..933Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10209 373..933 -
1622928216.3839502-CDS-Ecto-sp9_F_contig10209:1567..17231622928216.3839502-CDS-Ecto-sp9_F_contig10209:1567..1723Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10209 1568..1723 -
1692277799.0524857-CDS-Ecto-sp9_F_contig10209:1567..17231692277799.0524857-CDS-Ecto-sp9_F_contig10209:1567..1723Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10209 1568..1723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10209.235.1

>prot_Ecto-sp9_F_contig10209.235.1 ID=prot_Ecto-sp9_F_contig10209.235.1|Name=mRNA_Ecto-sp9_F_contig10209.235.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=275bp
MANLVPTLSYVPFEVARTCEQTPGTREARAKCDQLTTAIANAVNNAPEED
VLLFVKSHMNDLLEFLTREREVARGMAKAVLDKAPSARAAARWLAIMHTS
RELMWVARTLVEYRRAMTFAERDVEEAVHWLEARAAPLPCACVLLGTLED
GDNEGEAYVPPEGEEEEEEEEEEGEEQEDEEEEQEEEEQEEEEGVQGQEA
TPTEGGKEAVGQAATPAVPNSQTTEKVQEVAGCGGGSSQQGSGAAPRGHL
SFLTNTAGVASAARPAKRPKRQCN*
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mRNA from alignment at Ecto-sp9_F_contig10209:65..1723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10209.235.1 ID=mRNA_Ecto-sp9_F_contig10209.235.1|Name=mRNA_Ecto-sp9_F_contig10209.235.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1659bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10209:65..1723- (Ectocarpus species9 EcSCA_722f female)
ATGGCCAACCTCGTGCCCACCCTTAGCTACGTGCCCTTCGAGGTAGCTCG
AACCTGCGAGCAAACTCCCGGCACAAGAGAAGCTAGGGCCAAGTGCGACC
AACTAACCACGGCGATCGCAAACGCGGTCAACAACGCGCCCGAGGAGGAT
GTGTTGGTGAGATCCATCGGGCAAGCGCGCTGCTTGCGCAAAGTATGCAA
GGGCCAGAAGAACATCGAAATTCCCTTGACGAGTTTGTTTTGATTTGAAT
GGAACGATCGCACATCGTTTCAGCAGGCAGTATATCTTACTACTTTTCCA
TTCTGTCCACGCACCACTTCGATTTGACGTTTGAATTCAAAATTTGAAGA
CTTGCCGTTGGACATTTATCTTCCGGTGCTTCATTGCGGGTCGCATGCGC
TGCAGACAAATGATGGTCGGTACTCGGCAACAAACCGTGTTAGATGTTAA
ATGCTGGTTAAACGTGCTACAGAACGTATGGTGCATGAATGCGTCCACCT
TTCGAAATCGTTTTTTCAACTCTTGGTGCTCGCAGTGTGTACAACAGAGA
CATGTTCAGGGCCAGGCATAACATGTAGCCGATTTGGCCACGCGTGAATT
TCTGGCAGAGGGAGAGAGAGACAGAGAGAGACAGAGAGAGATGCAGGGAC
AAAAATGCGGCAACATTATGTCTACCGCTGTTCCTGCCGCCTCCTCCTGC
AGGGACTTCAAGTCCCCGGTATATAGAATGGGTGTGTATGTGTCATTTTA
CCTCACACCAGCGCTCCCCCCCGACTTTTCTCGGTTTCAGTTGTTCGTCA
AGTCACACATGAACGATCTCCTGGAATTCCTTACACGGGAACGGGAAGTG
GCGCGGGGCATGGCAAAAGCCGTGCTGGACAAAGCACCGTCCGCGAGGGC
TGCGGCCCGGTGGTTGGCGATAATGCATACGTCGCGCGAGCTCATGTGGG
TAGCCCGAACCCTCGTAGAGTACCGGCGCGCCATGACTTTCGCCGAGAGG
GATGTGGAGGAAGCCGTCCATTGGCTGGAAGCGCGCGCGGCGCCCCTGCC
GTGCGCTTGTGTGCTTCTCGGCACACTCGAGGACGGTGATAATGAGGGAG
AGGCCTATGTTCCGCCGGAGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGGAGGAACAGGAGGACGAGGAGGAGGAACAGGAGGAGGAGGAACA
GGAGGAGGAGGAAGGGGTACAGGGGCAGGAAGCGACTCCTACGGAGGGCG
GTAAGGAGGCGGTGGGTCAAGCAGCGACCCCGGCCGTTCCCAACTCCCAG
ACCACAGAAAAAGTGCAAGAAGTCGCCGGTTGCGGAGGGGGTTCGTCCCA
GGTAAGTAGGTCTACCGGCATCATCATGCCTCTTTTTGACATGCTCGCGG
CGGTATTTACATCGATCTTCTGCCGTTGTCCACAACGCCAGCCAGCCGTT
GTTCACAACGCCAGCCATCACGTGACAACAGCGGTGCCTCGCTACCGTCC
TTATGTTCCGTGTTTGCTCTCTCTGCGCACATACGTCAAACACACAATCA
GCAGGGATCAGGCGCAGCACCCAGGGGTCACTTGTCCTTTCTCACGAACA
CGGCGGGTGTAGCGTCAGCCGCCAGGCCGGCAAAGAGGCCGAAAAGGCAG
TGTAATTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10209:65..1723-

>mRNA_Ecto-sp9_F_contig10209.235.1 ID=mRNA_Ecto-sp9_F_contig10209.235.1|Name=mRNA_Ecto-sp9_F_contig10209.235.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1650bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10209:65..1723- (Ectocarpus species9 EcSCA_722f female)
ATGGCCAACCTCGTGCCCACCCTTAGCTACGTGCCCTTCGAGGTAGCTCG
AACCTGCGAGCAAACTCCCGGCACAAGAGAAGCTAGGGCCAAGTGCGACC
AACTAACCACGGCGATCGCAAACGCGGTCAACAACGCGCCCGAGGAGGAT
GTGTTGATGGCCAACCTCGTGCCCACCCTTAGCTACGTGCCCTTCGAGGT
AGCTCGAACCTGCGAGCAAACTCCCGGCACAAGAGAAGCTAGGGCCAAGT
GCGACCAACTAACCACGGCGATCGCAAACGCGGTCAACAACGCGCCCGAG
GAGGATGTGTTGTTGTTCGTCAAGTCACACATGAACGATCTCCTGGAATT
CCTTACACGGGAACGGGAAGTGGCGCGGGGCATGGCAAAAGCCGTGCTGG
ACAAAGCACCGTCCGCGAGGGCTGCGGCCCGGTGGTTGGCGATAATGCAT
ACGTCGCGCGAGCTCATGTGGGTAGCCCGAACCCTCGTAGAGTACCGGCG
CGCCATGACTTTCGCCGAGAGGGATGTGGAGGAAGCCGTCCATTGGCTGG
AAGCGCGCGCGGCGCCCCTGCCGTGCGCTTGTGTGCTTCTCGGCACACTC
GAGGACGGTGATAATGAGGGAGAGGCCTATGTTCCGCCGGAGGGAGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAACAGGAGGACGAGGAGG
AGGAACAGGAGGAGGAGGAACAGGAGGAGGAGGAAGGGGTACAGGGGCAG
GAAGCGACTCCTACGGAGGGCGGTAAGGAGGCGGTGGGTCAAGCAGCGAC
CCCGGCCGTTCCCAACTCCCAGACCACAGAAAAAGTGCAAGAAGTCGCCG
GTTGCGGAGGGGGTTCGTCCCAGTTGTTCGTCAAGTCACACATGAACGAT
CTCCTGGAATTCCTTACACGGGAACGGGAAGTGGCGCGGGGCATGGCAAA
AGCCGTGCTGGACAAAGCACCGTCCGCGAGGGCTGCGGCCCGGTGGTTGG
CGATAATGCATACGTCGCGCGAGCTCATGTGGGTAGCCCGAACCCTCGTA
GAGTACCGGCGCGCCATGACTTTCGCCGAGAGGGATGTGGAGGAAGCCGT
CCATTGGCTGGAAGCGCGCGCGGCGCCCCTGCCGTGCGCTTGTGTGCTTC
TCGGCACACTCGAGGACGGTGATAATGAGGGAGAGGCCTATGTTCCGCCG
GAGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAACAGGA
GGACGAGGAGGAGGAACAGGAGGAGGAGGAACAGGAGGAGGAGGAAGGGG
TACAGGGGCAGGAAGCGACTCCTACGGAGGGCGGTAAGGAGGCGGTGGGT
CAAGCAGCGACCCCGGCCGTTCCCAACTCCCAGACCACAGAAAAAGTGCA
AGAAGTCGCCGGTTGCGGAGGGGGTTCGTCCCAGCAGGGATCAGGCGCAG
CACCCAGGGGTCACTTGTCCTTTCTCACGAACACGGCGGGTGTAGCGTCA
GCCGCCAGGCCGGCAAAGAGGCCGAAAAGGCAGTGTAATTGACAGGGATC
AGGCGCAGCACCCAGGGGTCACTTGTCCTTTCTCACGAACACGGCGGGTG
TAGCGTCAGCCGCCAGGCCGGCAAAGAGGCCGAAAAGGCAGTGTAATTGA
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