mRNA_Ecto-sp9_F_contig10208.234.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10208.234.1
Unique NamemRNA_Ecto-sp9_F_contig10208.234.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10208.234.1 vs.
Match: Cytosolic (carboxypeptidase-like protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM13_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 3.700e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 RNSSWFYYGVAGGSANQIITMRIMNLNNQNALYKHGMTPVFRMSGNPNWARLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD 276
            RNSSWFYYGVAGGSANQIITMRIMNLNNQNALYKHGMTPVFRMSGNPNWARLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD
Sbjct:   82 RNSSWFYYGVAGGSANQIITMRIMNLNNQNALYKHGMTPVFRMSGNPNWARLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD 173
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BLAST of mRNA_Ecto-sp9_F_contig10208.234.1 vs.
Match: Peptidase_M14 (domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WSP1_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 4.390e-16
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:   10 SWFYYGVAGGSANQIITMRIMNLNNQNALYKHGMTPVFRMSGNPNWARLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD 276
            +WFYYGV+GG A  +I M +MNLN Q  LY     P +  +G P W   + K +++ +G   QL+F  RF    +EV FAF  P+SY D
Sbjct:   77 TWFYYGVSGGKAGDVIMMTMMNLNKQGKLYSQDYRPWYWTNGEPEWRMAESKCMYKRDGEDFQLRFSHRFD-SPQEVFFAFAIPFSYRD 164
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BLAST of mRNA_Ecto-sp9_F_contig10208.234.1 vs.
Match: Cytosolic (carboxypeptidase-like protein 5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK48_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.520e-15
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 RNSSWFYYGVAGGSANQIITMRIMNLNNQNALYKHGMTPVFR-MSGNPNWARLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD 276
            RNSSWF++ V GGS    +T+ I+NLN Q ALYK G  PV R +   P W+RL  +  F +      L +   F    EE+ FAFC+P SY +
Sbjct:  108 RNSSWFHFSVHGGSPGHTVTLTIVNLNRQPALYKCGYKPVSRSLPSRPEWSRLSAELDFGDSDHGYYLSWDVTFANPEEEIFFAFCYPQSYTE 200
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BLAST of mRNA_Ecto-sp9_F_contig10208.234.1 vs.
Match: Cytosolic (carboxypeptidase-like protein 5 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFA5_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 7.260e-10
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:    1 RNSSWFYYGVAGGSANQIITMRIMNLNNQNALYKHGMTPVFRMSG-NPNWARLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD 276
            ++ +WFY+G++G  A+Q+++  ++N+N Q  LY   M P F   G +  W    +    E      +L F  RFT  ++E  FAFC P+SY D
Sbjct:   79 KHRTWFYFGLSGHEADQVLSFHVVNMNKQAKLYSFDMRPAFYTPGVSGQWEPTLEAVKHEMVASGFKLSFTHRFT-SAKETFFAFCIPFSYTD 170
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BLAST of mRNA_Ecto-sp9_F_contig10208.234.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSA0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.480e-5
Identity = 29/87 (33.33%), Postives = 41/87 (47.13%), Query Frame = 1 
Query:   64 RIMNLNNQNALYKHGMTPVFR----------------MSGNPNWARLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD 276
            R   +  Q  LYKHG  PV R                ++G+  W RL   +  ++  R   LQF + F    +EV FAFCFPY+Y++
Sbjct:   78 RFAGMARQGQLYKHGHRPVVRRMKDKQQLGNEKCWSTLTGSGGWKRLNNCSYRDQGDRTGDLQFDYLFGEKGDEVEFAFCFPYAYEE 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10208.234.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Cytosolic3.700e-57100.00carboxypeptidase-like protein 5 n=1 Tax=Ectocarpus... [more]
Peptidase_M144.390e-1642.70domain-containing protein n=1 Tax=Chlamydomonas eu... [more]
Cytosolic1.520e-1543.01carboxypeptidase-like protein 5 n=1 Tax=Rhizochrom... [more]
Cytosolic7.260e-1034.41carboxypeptidase-like protein 5 n=1 Tax=Chloropico... [more]
Hypothetical5.480e-533.33protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10208contigEcto-sp9_F_contig10208:1433..2543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue9.7e-48
Seed eggNOG ortholog2880.D8LM13
Preferred nameAGBL5
GOsGO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009605,GO:0009607,GO:0009615,GO:0009790,GO:0009792,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016787,GO:0018193,GO:0018200,GO:0019538,GO:0022607,GO:0030030,GO:0030031,GO:0030496,GO:0032501,GO:0032502,GO:0035608,GO:0035610,GO:0035611,GO:0036211,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044782,GO:0045171,GO:0048856,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0060271,GO:0070011,GO:0070925,GO:0071704,GO:0071840,GO:0072686,GO:0098542,GO:0120031,GO:0120036,GO:0140096,GO:1901564
EggNOG free text desc.protein deglutamylation
EggNOG OGsCOG2866@1,KOG3641@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10208.234.1prot_Ecto-sp9_F_contig10208.234.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10208 1433..2543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928216.2760599-CDS-Ecto-sp9_F_contig10208:1432..15311622928216.2760599-CDS-Ecto-sp9_F_contig10208:1432..1531Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10208 1433..1531 -
1692277799.0000298-CDS-Ecto-sp9_F_contig10208:1432..15311692277799.0000298-CDS-Ecto-sp9_F_contig10208:1432..1531Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10208 1433..1531 -
1622928216.290751-CDS-Ecto-sp9_F_contig10208:1953..20671622928216.290751-CDS-Ecto-sp9_F_contig10208:1953..2067Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10208 1954..2067 -
1692277799.0101092-CDS-Ecto-sp9_F_contig10208:1953..20671692277799.0101092-CDS-Ecto-sp9_F_contig10208:1953..2067Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10208 1954..2067 -
1622928216.3041127-CDS-Ecto-sp9_F_contig10208:2480..25431622928216.3041127-CDS-Ecto-sp9_F_contig10208:2480..2543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10208 2481..2543 -
1692277799.0182738-CDS-Ecto-sp9_F_contig10208:2480..25431692277799.0182738-CDS-Ecto-sp9_F_contig10208:2480..2543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10208 2481..2543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10208.234.1

>prot_Ecto-sp9_F_contig10208.234.1 ID=prot_Ecto-sp9_F_contig10208.234.1|Name=mRNA_Ecto-sp9_F_contig10208.234.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
RNSSWFYYGVAGGSANQIITMRIMNLNNQNALYKHGMTPVFRMSGNPNWA
RLKQKAIFEEEGRHLQLQFQFRFTRDSEEVLFAFCFPYSYDD
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mRNA from alignment at Ecto-sp9_F_contig10208:1433..2543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10208.234.1 ID=mRNA_Ecto-sp9_F_contig10208.234.1|Name=mRNA_Ecto-sp9_F_contig10208.234.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1111bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10208:1433..2543- (Ectocarpus species9 EcSCA_722f female)
CGTAACTCGAGCTGGTTCTACTATGGGGTGGCCGGTGGTTCAGCGAATCA
GATAATCACCATGGTACGCCTGTGGAAACGTATAACTTTGACTTTGCCTG
AAGGTTGCCCAACAAGAACGGTGGCCCCTGTGATTGTCGGTAGAGAGGCT
ACATTGGCAATGTGTCTCGAATCGCGGTATCAAAAGGATACACACATGTT
GAGTTGTGACAGCAGCAGGCGTGAGAATCCTTAGTGAAGCGGAACTTCGA
GGCGCTGTTGCTGTGCCGCTGATCTACCCTGCGTGTTGGTGTCTGCCCCA
CACCAGACATTGCCGAACCGCCATGCACCTGCTTCACGGGTTCCAAGTCT
CGCCAACCCGTAATTTGGAGGGCTGAACACATGATGCTTTCCCCGATCGC
TCCACAGCCGAACAACGGCTTGTTCTGATCTTCCCTCCCGTTCCATCCTG
CATTCAACACCATCCTGCACGCACAGAGAATCATGAACTTGAACAACCAG
AACGCTCTCTACAAGCACGGGATGACGCCGGTTTTCCGCATGTCGGGAAA
CCCAAACTGGGCCCGCCTCAAGCAGAAAGCTATCTTCGAGGTGAACGGCG
TCCGTTTTTTGTTTCTGCATTTCCTCTCTGCGAAAACAAACAAAACTAAT
TACTCCTCTCTTTCTGGTAGACAAAGTTCCAGGAAACGTTAGAGCGATAG
GCTCATAGGCAACGTGTATGGCCTAATTGGGTGCCTTCTCACGGTTAATG
GTTCGACAAGACAAGACACCCTCAAACGGGCGAGCAGGCGAGAGCCGCTA
GGTGCTGATCGGTTGATTGTACCCCGCTCGGCCGTCCACTTAAAGCTGCA
AGCAAGGTCAACTCGAGCGCCCTGATGCCGTGTCTTCTGCTCTCCTCGCT
ACCAGGGTGGAAGGCAGAGCCGAAGCCGAACTCACCTTTACGCACGAAAC
GATCGTCCATCGTCTCCCTTTCCCCGCGCCGACTTTCTCTCCCTCTGTCC
TTGCGTTCTCAGGAAGAGGGCAGGCACTTGCAGCTCCAATTTCAGTTCCG
CTTTACCAGAGACTCGGAGGAGGTGCTGTTTGCCTTTTGTTTCCCCTACA
GCTATGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10208:1433..2543-

>mRNA_Ecto-sp9_F_contig10208.234.1 ID=mRNA_Ecto-sp9_F_contig10208.234.1|Name=mRNA_Ecto-sp9_F_contig10208.234.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10208:1433..2543- (Ectocarpus species9 EcSCA_722f female)
CGTAACTCGAGCTGGTTCTACTATGGGGTGGCCGGTGGTTCAGCGAATCA
GATAATCACCATGCGTAACTCGAGCTGGTTCTACTATGGGGTGGCCGGTG
GTTCAGCGAATCAGATAATCACCATGAGAATCATGAACTTGAACAACCAG
AACGCTCTCTACAAGCACGGGATGACGCCGGTTTTCCGCATGTCGGGAAA
CCCAAACTGGGCCCGCCTCAAGCAGAAAGCTATCTTCGAGAGAATCATGA
ACTTGAACAACCAGAACGCTCTCTACAAGCACGGGATGACGCCGGTTTTC
CGCATGTCGGGAAACCCAAACTGGGCCCGCCTCAAGCAGAAAGCTATCTT
CGAGGAAGAGGGCAGGCACTTGCAGCTCCAATTTCAGTTCCGCTTTACCA
GAGACTCGGAGGAGGTGCTGTTTGCCTTTTGTTTCCCCTACAGCTATGAC
GACGAAGAGGGCAGGCACTTGCAGCTCCAATTTCAGTTCCGCTTTACCAG
AGACTCGGAGGAGGTGCTGTTTGCCTTTTGTTTCCCCTACAGCTATGACG
AC
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