mRNA_Ecto-sp9_F_contig102.232.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig102.232.1
Unique NamemRNA_Ecto-sp9_F_contig102.232.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: CHAT (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 8.540e-124
Identity = 185/192 (96.35%), Postives = 189/192 (98.44%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
            ELKMIR KLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHG+NEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGV+TELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAG FTV+QAFDIALNTVNA+PPYARPQGDHFLLLPHGGNHDVRIFDTLPEG FVDET
Sbjct:   55 ELKMIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGNNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVQTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGSFTVQQAFDIALNTVNAHPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGSFVDET 246          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 2.190e-122
Identity = 186/189 (98.41%), Postives = 188/189 (99.47%), Query Frame = 1
Query:   10 MIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
            MIR KLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNA+PP+ARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET
Sbjct:    1 MIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAHPPHARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 189          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: CHAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN2_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.860e-69
Identity = 117/179 (65.36%), Postives = 132/179 (73.74%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYA--RPQGDHFLLLPHGGNHDV 531
            EL++IR  LRE GRQIRFR+EVA   N   LL SGCRMLH+ G G++++LAFES  D  CGIMEPL V  LKNLFQAGGVRTELVFISSCSSE SG A V+AGVPHVVAVK E +VTD+ A  F+  FYDALL   GR+TVKQAFDIALN VNA    A  R  G HF+LLP G    +
Sbjct:   32 ELELIRNTLRECGRQIRFRAEVANTMNLTRLLCSGCRMLHFAGQGNDKYLAFESGRDWNCGIMEPLEVASLKNLFQAGGVRTELVFISSCSSEMSGRACVEAGVPHVVAVKHEANVTDEEALHFSTVFYDALLENGGRYTVKQAFDIALNFVNATHSSAPNRHAGGHFVLLPKGKKKSI 210          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 5.150e-69
Identity = 126/194 (64.95%), Postives = 146/194 (75.26%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGG-VRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYA-RPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
            EL+ +R KLR  GRQI+FR+EVA   N   LL+SGC +LHY GHG++E+LAFES  +  CGIMEPL V  LKNLF+  G V+T+LVFISSCSSEASGN FV AGVPHVVAVK    VTD AA++FA  FY+AL    GR TVKQAFD+ALN VNA    A + + D FLLLP  GNHDVRIFDTLPEG+ VDET
Sbjct:   51 ELEFVRNKLRGFGRQIKFRAEVANAMNLTRLLHSGCLLLHYAGHGNDEYLAFESTTEWKCGIMEPLKVKYLKNLFRVDGIVKTQLVFISSCSSEASGNVFVAAGVPHVVAVKHNAGVTDGAAREFANVFYNALFENGGRSTVKQAFDMALNCVNATHLGAPKHEEDLFLLLPRDGNHDVRIFDTLPEGKLVDET 244          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.060e-50
Identity = 101/173 (58.38%), Postives = 121/173 (69.94%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGG-VRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHG 516
            EL+ +   LR  GRQ+ FR+EVA   N   L+NSGC MLHY GHG+ E+LAFES  + MCGIMEPL V  L+NLF+ GG V+T+LVFI SCSSE SGN FV AGVPHVVAVK    VTD AA++FA  FYDAL+      TVK+AFD AL  +NA+    + + D FLLLP G
Sbjct:   16 ELEHLLETLRGCGRQVSFRAEVANTMNLTRLVNSGCLMLHYAGHGNGEYLAFESTTEWMCGIMEPLKVEYLENLFRVGGIVQTQLVFIGSCSSEVSGNVFVAAGVPHVVAVKHNSGVTDGAAREFATVFYDALIKH--EVTVKRAFDTALICINAHRCPPKHEEDLFLLLPKG 186          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD68_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.300e-45
Identity = 99/196 (50.51%), Postives = 130/196 (66.33%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDH-FLLLPHGGNHDVRIFDTLPE---GRFVDET 576
            EL+ +R  L ESGR++ FR+EVA   NFR L+  GCRMLHYTGHG+   L FE+ +    G   PL V  L +LF+AGGVRT+LVF+S+C SE++G+AF  AGVPHVVAVK +E VTD AA+ FA+QFY +L++     TV+ +F I + ++ A    A    D  FLLLP  GNHD+ IFD   +   G  +DET
Sbjct:   16 ELQSLRKTLIESGRRLTFRAEVATVRNFRFLVTLGCRMLHYTGHGNPSCLIFENEN----GEANPLSVEMLTDLFRAGGVRTQLVFVSACHSESAGHAFAAAGVPHVVAVKFDEKVTDYAARVFAEQFYLSLVTGN---TVRNSFQIGVTSIMAEASAATYNEDKKFLLLPGDGNHDIAIFDASSQAIGGPLLDET 204          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 8.910e-45
Identity = 96/184 (52.17%), Postives = 107/184 (58.15%), Query Frame = 1
Query:   25 LRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
            LRESGRQIRFR+EVA   N   LL SGCRMLH+ G G++++LAFES  D  CGIMEPL V  L NLFQAGGVRTELVFISSCSSE SG A V+AGVPHVVAVK + +VT                                                      GGNHDVRIF+TLPEG+ VDET
Sbjct:    2 LRESGRQIRFRAEVANIINLSRLLKSGCRMLHFAGQGNDKYLAFESGRDWNCGIMEPLEVASLSNLFQAGGVRTELVFISSCSSEMSGRACVEAGVPHVVAVKHKANVT------------------------------------------------------GGNHDVRIFETLPEGQLVDET 131          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT24_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 4.290e-38
Identity = 82/194 (42.27%), Postives = 111/194 (57.22%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGV--RTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
            E + ++  L  + +++R RS  A P  FRE L  GCR+LHY GHG    LAFE+ +    G    ++   L  +F  G    R  LVF+++C SE S  AFV AGV HVV VKR+  + D+AA  F  QFY AL+      TVK+AF IA N+V     Y + + + +LLLP  GNHDVRI++ +P G   D T
Sbjct:   40 EWESLKKTLANANKKLRIRSIYATPEIFRETLTLGCRVLHYAGHGLPSALAFENGE----GATHLINRSTLNQIFAVGNSHERVRLVFVAACHSEVSAEAFVGAGVKHVVGVKRDAKLNDKAALTFTTQFYLALMVN----TVKEAFQIAKNSVANLTDYGKGESEKYLLLPANGNHDVRIYEDIPRGTMSDHT 225          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: Sh2 (domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.510e-36
Identity = 88/192 (45.83%), Postives = 116/192 (60.42%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
            EL  ++  L ++ R+I FR+EVA   N R+LL  GCRMLHYTG G    L FE   ++  G    L +  L  LF AGGVRT+LVF+S+  SE  G AF+ AGV HVVA+K +  V+D+AA  FA+ FY   LS A   TV+QAF++A +T          + + FLLLP  G HD+ +FD    G FVDE+
Sbjct:   95 ELGRLKHTLHDAQRRILFRAEVATVKNCRKLLTIGCRMLHYTGIGKPSCLIFEK--EKPVGETNVLSIETLTELFAAGGVRTQLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFY---LSIAMGRTVRQAFEVA-STAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDES 280          
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: CHAT (domain-containing protein (Fragment) n=1 Tax=Methanosaeta sp. ASO1 TaxID=1917474 RepID=A0A257MPY2_9EURY)

HSP 1 Score: 133 bits (334), Expect = 1.750e-35
Identity = 86/195 (44.10%), Postives = 110/195 (56.41%), Query Frame = 1
Query:    1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVR-TELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYP--PYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
            E ++I   L ++G  I  RS+ A   NFR ++  GC+ LH++GHG    LAFE  D R  G    +    L+ LFQAGG    ++VF+S+C S   G AFV AGV HVVAV+ EE V D+AA  FA+ FY AL   A R TV+QAFD     V   P  P    + + FLLLP  G HDV IF    +G F D +
Sbjct:   35 EKEIISKSLMQTGISIEIRSDFATADNFRAMVVLGCQALHFSGHGLPGVLAFE--DGR--GGAHLIEADLLRELFQAGGPSGIQMVFVSACHSRQIGEAFVKAGVEHVVAVRLEEPVYDKAAANFARAFYQAL---AARKTVQQAFDSGRAAVKTTPHLPDTAFEAEKFLLLPEYGKHDVAIFADAKKGDFTDSS 222          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CHAT8.540e-12496.35domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
SH22.190e-12298.41domain containing protein n=1 Tax=Ectocarpus silic... [more]
CHAT2.860e-6965.36domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SH25.150e-6964.95domain containing protein n=1 Tax=Ectocarpus silic... [more]
SH21.060e-5058.38domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SH22.300e-4550.51domain-containing protein n=1 Tax=Nannochloropsis ... [more]
SH28.910e-4552.17domain containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical4.290e-3842.27protein (Fragment) n=1 Tax=Amorphochlora amoebifor... [more]
Sh26.510e-3645.83domain containing protein n=2 Tax=Monodopsidaceae ... [more]
CHAT1.750e-3544.10domain-containing protein (Fragment) n=1 Tax=Metha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig102contigEcto-sp9_F_contig102:54566..56406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score378.6
Seed ortholog evalue1.7e-102
Seed eggNOG ortholog2880.D7FNX8
EggNOG OGs28NM8@1,2QV6X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size576
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig102.232.1prot_Ecto-sp9_F_contig102.232.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig102 54575..56406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928215.995641-UTR-Ecto-sp9_F_contig102:54565..545741622928215.995641-UTR-Ecto-sp9_F_contig102:54565..54574Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig102 54566..54574 +
1692277798.845393-UTR-Ecto-sp9_F_contig102:54565..545741692277798.845393-UTR-Ecto-sp9_F_contig102:54565..54574Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig102 54566..54574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928216.0135846-CDS-Ecto-sp9_F_contig102:54574..547661622928216.0135846-CDS-Ecto-sp9_F_contig102:54574..54766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 54575..54766 +
1692277798.856323-CDS-Ecto-sp9_F_contig102:54574..547661692277798.856323-CDS-Ecto-sp9_F_contig102:54574..54766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 54575..54766 +
1622928216.0397232-CDS-Ecto-sp9_F_contig102:55305..554561622928216.0397232-CDS-Ecto-sp9_F_contig102:55305..55456Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 55306..55456 +
1692277798.8656855-CDS-Ecto-sp9_F_contig102:55305..554561692277798.8656855-CDS-Ecto-sp9_F_contig102:55305..55456Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 55306..55456 +
1622928216.0651872-CDS-Ecto-sp9_F_contig102:55850..560121622928216.0651872-CDS-Ecto-sp9_F_contig102:55850..56012Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 55851..56012 +
1692277798.8749201-CDS-Ecto-sp9_F_contig102:55850..560121692277798.8749201-CDS-Ecto-sp9_F_contig102:55850..56012Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 55851..56012 +
1622928216.0797553-CDS-Ecto-sp9_F_contig102:56344..564061622928216.0797553-CDS-Ecto-sp9_F_contig102:56344..56406Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 56345..56406 +
1692277798.8864977-CDS-Ecto-sp9_F_contig102:56344..564061692277798.8864977-CDS-Ecto-sp9_F_contig102:56344..56406Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 56345..56406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig102.232.1

>prot_Ecto-sp9_F_contig102.232.1 ID=prot_Ecto-sp9_F_contig102.232.1|Name=mRNA_Ecto-sp9_F_contig102.232.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=189bp
MIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFE
SNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAG
VPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVN
AYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET
back to top

mRNA from alignment at Ecto-sp9_F_contig102:54566..56406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig102.232.1 ID=mRNA_Ecto-sp9_F_contig102.232.1|Name=mRNA_Ecto-sp9_F_contig102.232.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1841bp|location=Sequence derived from alignment at Ecto-sp9_F_contig102:54566..56406+ (Ectocarpus species9 EcSCA_722f female)
GAGCTCAAGATGATCAGGACGAAGCTGAGAGAGTCCGGGCGTCAGATACG CTTCCGGTCGGAGGTGGCGAAGCCCTCGAACTTCCGGGAGCTCCTGAACA GCGGGTGCAGAATGCTGCACTACACTGGCCACGGGAGCAACGAGTTCCTC GCCTTCGAGTCCAACGACGACCGGATGTGCGGGATCATGGAGCCTCTGCA CGTGCGTGCTCTGTTTTTGGTGTGAAACCTTTCGTTTTGGACGTCCTCCT CGGAGTGTGTAGGGTCGAGAGCCTTCTCCACGACCGAAAGAGTGCCGGCG GCATGTTTTTTTTTTCGCACATGTATTGTGGACGACTGTAACCGCTGTTG TTGTTTGGTTGTCGTCCTACCTGGATACTTGCAGAGATTAGGAACCGCTC ACGCACGTTGTGAGGTATTTTGTCATGCCTCTCGGTGGAGACAAGCGCCC GGTGGTTTGGCTTTCTTTCGTGTTCGTCCAAATTAAGCTCCCATACAAGT CAACCTCCTCCATGTTTTGTAGGTGACGATCAGAAACCTTGCAGATATAA CTATTGCTTTTCCACAGGAGTTTTTTCCATGCGCGATGCCTTGCCGACTT TGCGCTCCAAGATAAACAAGATGCCTTTGTCTCAGATGCATAACCGTTGC CACTGCGAATGATCTTCCTCGCGCCGCCGTAACCCCGACGTTTCTTCTTG GCACGATGGTACATTCACGCACGTCGCGCCGCTTCTGCAGGTGGGGCCTC TGAAGAACCTGTTTCAGGCTGGGGGTGTGCGGACGGAGCTGGTGTTCATC AGCTCGTGTTCCTCGGAGGCTAGCGGTAACGCATTCGTGGACGCAGGCGT GCCGCACGTGGTGGCCGTCAAGCGGGAGGAGAGCGTGACCGGTGAGCCGG TCGCCGTCGCTTGTGTAGGCCTTTCTTGTCGTCTCGATGATGTTGTTTAT TGTTGGTGGCGATGTTGTTGTTGTTGTGGTGTTGGTGGTATTGTCAGCGT CTTTTTGCCTTTGTTGTCGTTGTCGTGGTGTTGGTGGTAGTGTTGTCAGT ATCGCTGTCTTGTTGGTCTGTTATTTGTGTATTTTGTCGCTATATTGTTG CCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGCCTGAC ATCCCGGCAATGCTCTGCTCGGTCGTGAACGATTTCCACAACACAATTCG AGAACCATTGTTTTTTTCTTTCGCCCGTGCCGTACCCCCACCGCCGCCTT GGCATCGTCTCGCCCTTTCCACACCGCCGCCTTAGATCAAGCGGCGCAGC AGTTCGCGAAGCAGTTTTACGACGCCCTTTTGAGCGAGGCCGGGAGGTTT ACCGTGAAGCAGGCGTTCGACATCGCCCTCAACACGGTCAACGCCTACCC TCCGTACGCGCGCCCACAGGGAGACCACTTCCTCCTGCTCCCACACGGTG CGTGTTAAATGCCGAGCAGTACTTGAATCAATCGTGTTATAATGGTCAAG GAGGAAGAACCTGATAGGGGTGTAGGAGATAGAGAGGAGGTGGTCCGACA CCCTCAGCGCGTCGCTTTTAGGTTTCGTGATGTGGCGCCGCTGTGCCAAT GTGTTTTTCGCCGGAGGCTTTCACCTTCGTCTTAGCCCGGTCGTAGTACG CGCCTCGGATTTGAGCACTACAAGCAGTAGAAACGAATAGTACAGCCCTT TTGCGTTCGGCAAGAAGCGCGAGGGGGCACCGTGGGTTGAACGCTTCCCC TACCCCTACCCCCACGCCCGCCCGCTCAGGCGGAAACCACGACGTTCGAA TTTTCGACACGCTTCCGGAGGGCCGTTTCGTCGACGAGACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig102:54566..56406+

>mRNA_Ecto-sp9_F_contig102.232.1 ID=mRNA_Ecto-sp9_F_contig102.232.1|Name=mRNA_Ecto-sp9_F_contig102.232.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp9_F_contig102:54566..56406+ (Ectocarpus species9 EcSCA_722f female)
ATGATCAGGACGAAGCTGAGAGAGTCCGGGCGTCAGATACGCTTCCGGTC
GGAGGTGGCGAAGCCCTCGAACTTCCGGGAGCTCCTGAACAGCGGGTGCA
GAATGCTGCACTACACTGGCCACGGGAGCAACGAGTTCCTCGCCTTCGAG
TCCAACGACGACCGGATGTGCGGGATCATGGAGCCTCTGCACATGATCAG
GACGAAGCTGAGAGAGTCCGGGCGTCAGATACGCTTCCGGTCGGAGGTGG
CGAAGCCCTCGAACTTCCGGGAGCTCCTGAACAGCGGGTGCAGAATGCTG
CACTACACTGGCCACGGGAGCAACGAGTTCCTCGCCTTCGAGTCCAACGA
CGACCGGATGTGCGGGATCATGGAGCCTCTGCACGTGGGGCCTCTGAAGA
ACCTGTTTCAGGCTGGGGGTGTGCGGACGGAGCTGGTGTTCATCAGCTCG
TGTTCCTCGGAGGCTAGCGGTAACGCATTCGTGGACGCAGGCGTGCCGCA
CGTGGTGGCCGTCAAGCGGGAGGAGAGCGTGACCGGTGGGGCCTCTGAAG
AACCTGTTTCAGGCTGGGGGTGTGCGGACGGAGCTGGTGTTCATCAGCTC
GTGTTCCTCGGAGGCTAGCGGTAACGCATTCGTGGACGCAGGCGTGCCGC
ACGTGGTGGCCGTCAAGCGGGAGGAGAGCGTGACCGATCAAGCGGCGCAG
CAGTTCGCGAAGCAGTTTTACGACGCCCTTTTGAGCGAGGCCGGGAGGTT
TACCGTGAAGCAGGCGTTCGACATCGCCCTCAACACGGTCAACGCCTACC
CTCCGTACGCGCGCCCACAGGGAGACCACTTCCTCCTGCTCCCACACGAT
CAAGCGGCGCAGCAGTTCGCGAAGCAGTTTTACGACGCCCTTTTGAGCGA
GGCCGGGAGGTTTACCGTGAAGCAGGCGTTCGACATCGCCCTCAACACGG
TCAACGCCTACCCTCCGTACGCGCGCCCACAGGGAGACCACTTCCTCCTG
CTCCCACACGGCGGAAACCACGACGTTCGAATTTTCGACACGCTTCCGGA
GGGCCGTTTCGTCGACGAGACCGCGGAAACCACGACGTTCGAATTTTCGA
CACGCTTCCGGAGGGCCGTTTCGTCGACGAGACC
back to top