mRNA_Ecto-sp9_F_contig102.232.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: CHAT (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE) HSP 1 Score: 376 bits (965), Expect = 8.540e-124 Identity = 185/192 (96.35%), Postives = 189/192 (98.44%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
ELKMIR KLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHG+NEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGV+TELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAG FTV+QAFDIALNTVNA+PPYARPQGDHFLLLPHGGNHDVRIFDTLPEG FVDET
Sbjct: 55 ELKMIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGNNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVQTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGSFTVQQAFDIALNTVNAHPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGSFVDET 246
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 378 bits (971), Expect = 2.190e-122 Identity = 186/189 (98.41%), Postives = 188/189 (99.47%), Query Frame = 1
Query: 10 MIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
MIR KLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNA+PP+ARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET
Sbjct: 1 MIRMKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAHPPHARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 189
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: CHAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN2_9PHAE) HSP 1 Score: 219 bits (557), Expect = 2.860e-69 Identity = 117/179 (65.36%), Postives = 132/179 (73.74%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYA--RPQGDHFLLLPHGGNHDV 531
EL++IR LRE GRQIRFR+EVA N LL SGCRMLH+ G G++++LAFES D CGIMEPL V LKNLFQAGGVRTELVFISSCSSE SG A V+AGVPHVVAVK E +VTD+ A F+ FYDALL GR+TVKQAFDIALN VNA A R G HF+LLP G +
Sbjct: 32 ELELIRNTLRECGRQIRFRAEVANTMNLTRLLCSGCRMLHFAGQGNDKYLAFESGRDWNCGIMEPLEVASLKNLFQAGGVRTELVFISSCSSEMSGRACVEAGVPHVVAVKHEANVTDEEALHFSTVFYDALLENGGRYTVKQAFDIALNFVNATHSSAPNRHAGGHFVLLPKGKKKSI 210
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 236 bits (603), Expect = 5.150e-69 Identity = 126/194 (64.95%), Postives = 146/194 (75.26%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGG-VRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYA-RPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
EL+ +R KLR GRQI+FR+EVA N LL+SGC +LHY GHG++E+LAFES + CGIMEPL V LKNLF+ G V+T+LVFISSCSSEASGN FV AGVPHVVAVK VTD AA++FA FY+AL GR TVKQAFD+ALN VNA A + + D FLLLP GNHDVRIFDTLPEG+ VDET
Sbjct: 51 ELEFVRNKLRGFGRQIKFRAEVANAMNLTRLLHSGCLLLHYAGHGNDEYLAFESTTEWKCGIMEPLKVKYLKNLFRVDGIVKTQLVFISSCSSEASGNVFVAAGVPHVVAVKHNAGVTDGAAREFANVFYNALFENGGRSTVKQAFDMALNCVNATHLGAPKHEEDLFLLLPRDGNHDVRIFDTLPEGKLVDET 244
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE) HSP 1 Score: 185 bits (469), Expect = 1.060e-50 Identity = 101/173 (58.38%), Postives = 121/173 (69.94%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGG-VRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHG 516
EL+ + LR GRQ+ FR+EVA N L+NSGC MLHY GHG+ E+LAFES + MCGIMEPL V L+NLF+ GG V+T+LVFI SCSSE SGN FV AGVPHVVAVK VTD AA++FA FYDAL+ TVK+AFD AL +NA+ + + D FLLLP G
Sbjct: 16 ELEHLLETLRGCGRQVSFRAEVANTMNLTRLVNSGCLMLHYAGHGNGEYLAFESTTEWMCGIMEPLKVEYLENLFRVGGIVQTQLVFIGSCSSEVSGNVFVAAGVPHVVAVKHNSGVTDGAAREFATVFYDALIKH--EVTVKRAFDTALICINAHRCPPKHEEDLFLLLPKG 186
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD68_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.300e-45 Identity = 99/196 (50.51%), Postives = 130/196 (66.33%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDH-FLLLPHGGNHDVRIFDTLPE---GRFVDET 576
EL+ +R L ESGR++ FR+EVA NFR L+ GCRMLHYTGHG+ L FE+ + G PL V L +LF+AGGVRT+LVF+S+C SE++G+AF AGVPHVVAVK +E VTD AA+ FA+QFY +L++ TV+ +F I + ++ A A D FLLLP GNHD+ IFD + G +DET
Sbjct: 16 ELQSLRKTLIESGRRLTFRAEVATVRNFRFLVTLGCRMLHYTGHGNPSCLIFENEN----GEANPLSVEMLTDLFRAGGVRTQLVFVSACHSESAGHAFAAAGVPHVVAVKFDEKVTDYAARVFAEQFYLSLVTGN---TVRNSFQIGVTSIMAEASAATYNEDKKFLLLPGDGNHDIAIFDASSQAIGGPLLDET 204
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 168 bits (425), Expect = 8.910e-45 Identity = 96/184 (52.17%), Postives = 107/184 (58.15%), Query Frame = 1
Query: 25 LRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
LRESGRQIRFR+EVA N LL SGCRMLH+ G G++++LAFES D CGIMEPL V L NLFQAGGVRTELVFISSCSSE SG A V+AGVPHVVAVK + +VT GGNHDVRIF+TLPEG+ VDET
Sbjct: 2 LRESGRQIRFRAEVANIINLSRLLKSGCRMLHFAGQGNDKYLAFESGRDWNCGIMEPLEVASLSNLFQAGGVRTELVFISSCSSEMSGRACVEAGVPHVVAVKHKANVT------------------------------------------------------GGNHDVRIFETLPEGQLVDET 131
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT24_9EUKA) HSP 1 Score: 145 bits (367), Expect = 4.290e-38 Identity = 82/194 (42.27%), Postives = 111/194 (57.22%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGV--RTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
E + ++ L + +++R RS A P FRE L GCR+LHY GHG LAFE+ + G ++ L +F G R LVF+++C SE S AFV AGV HVV VKR+ + D+AA F QFY AL+ TVK+AF IA N+V Y + + + +LLLP GNHDVRI++ +P G D T
Sbjct: 40 EWESLKKTLANANKKLRIRSIYATPEIFRETLTLGCRVLHYAGHGLPSALAFENGE----GATHLINRSTLNQIFAVGNSHERVRLVFVAACHSEVSAEAFVGAGVKHVVGVKRDAKLNDKAALTFTTQFYLALMVN----TVKEAFQIAKNSVANLTDYGKGESEKYLLLPANGNHDVRIYEDIPRGTMSDHT 225
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: Sh2 (domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA) HSP 1 Score: 142 bits (359), Expect = 6.510e-36 Identity = 88/192 (45.83%), Postives = 116/192 (60.42%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
EL ++ L ++ R+I FR+EVA N R+LL GCRMLHYTG G L FE ++ G L + L LF AGGVRT+LVF+S+ SE G AF+ AGV HVVA+K + V+D+AA FA+ FY LS A TV+QAF++A +T + + FLLLP G HD+ +FD G FVDE+
Sbjct: 95 ELGRLKHTLHDAQRRILFRAEVATVKNCRKLLTIGCRMLHYTGIGKPSCLIFEK--EKPVGETNVLSIETLTELFAAGGVRTQLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFY---LSIAMGRTVRQAFEVA-STAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDES 280
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Match: CHAT (domain-containing protein (Fragment) n=1 Tax=Methanosaeta sp. ASO1 TaxID=1917474 RepID=A0A257MPY2_9EURY) HSP 1 Score: 133 bits (334), Expect = 1.750e-35 Identity = 86/195 (44.10%), Postives = 110/195 (56.41%), Query Frame = 1
Query: 1 ELKMIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVR-TELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAYP--PYARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDET 576
E ++I L ++G I RS+ A NFR ++ GC+ LH++GHG LAFE D R G + L+ LFQAGG ++VF+S+C S G AFV AGV HVVAV+ EE V D+AA FA+ FY AL A R TV+QAFD V P P + + FLLLP G HDV IF +G F D +
Sbjct: 35 EKEIISKSLMQTGISIEIRSDFATADNFRAMVVLGCQALHFSGHGLPGVLAFE--DGR--GGAHLIEADLLRELFQAGGPSGIQMVFVSACHSRQIGEAFVKAGVEHVVAVRLEEPVYDKAAANFARAFYQAL---AARKTVQQAFDSGRAAVKTTPHLPDTAFEAEKFLLLPEYGKHDVAIFADAKKGDFTDSS 222 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig102.232.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig102.232.1 >prot_Ecto-sp9_F_contig102.232.1 ID=prot_Ecto-sp9_F_contig102.232.1|Name=mRNA_Ecto-sp9_F_contig102.232.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=189bp MIRTKLRESGRQIRFRSEVAKPSNFRELLNSGCRMLHYTGHGSNEFLAFEback to top mRNA from alignment at Ecto-sp9_F_contig102:54566..56406+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig102.232.1 ID=mRNA_Ecto-sp9_F_contig102.232.1|Name=mRNA_Ecto-sp9_F_contig102.232.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1841bp|location=Sequence derived from alignment at Ecto-sp9_F_contig102:54566..56406+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig102:54566..56406+ >mRNA_Ecto-sp9_F_contig102.232.1 ID=mRNA_Ecto-sp9_F_contig102.232.1|Name=mRNA_Ecto-sp9_F_contig102.232.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp9_F_contig102:54566..56406+ (Ectocarpus species9 EcSCA_722f female)back to top |