mRNA_Ecto-sp9_F_contig102.231.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig102.231.1
Unique NamemRNA_Ecto-sp9_F_contig102.231.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig102.231.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY0_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 1.460e-154
Identity = 262/275 (95.27%), Postives = 265/275 (96.36%), Query Frame = 1 
Query:    1 MTRVVLQHHAAXXARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHYTQCRSLIGSDKASTTSSRDDKDADATAQTAPTTGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGDSGGGGGDANSATRPSFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYMAANRNAAEALARGGXXXXXXXXXXXXXXXXXXXSHENTV 825
            MTRVVLQHHAAXXARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHYT+CRSL GSDKASTTSS DDKDADATAQ AP TGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGD G    DANSATRP+FDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEY+AANRNAAEALARG XXXXXXXXXXXXXXXXXXXSHENTV
Sbjct:    1 MTRVVLQHHAAXXARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHYTRCRSLSGSDKASTTSSSDDKDADATAQRAPNTGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGDGGXXXXDANSATRPTFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRNAAEALARGXXXXXXXXXXXXXXXXXXXXSHENTV 275
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BLAST of mRNA_Ecto-sp9_F_contig102.231.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN63_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 6.960e-135
Identity = 219/260 (84.23%), Postives = 227/260 (87.31%), Query Frame = 1 
Query:    1 MTRVVLQHHAAXXARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHYTQCRSLIGSDKASTTSSRDDKDADATAQTAPTTGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGDSGGGGGDA--NSATRPSFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYMAANR---------NAAEALARG 747
            MTR VLQHHA   AR+FLRRAAA+NSSHLRP S TGASISQQQARTLHYTQCRSL GSDKAST +SRDDKDADATAQTAP TGTPPAAGGIFGNLPARTAAARAGRGCLIALP+ GIGFSAWTCVTDYRRVRHELK A VGLALAEMS+QR+AGRKGDS         NSATRP+ DASP RSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEY+AANR          AAEALARG
Sbjct:   27 MTRDVLQHHAVAAARVFLRRAAAINSSHLRPPSLTGASISQQQARTLHYTQCRSLSGSDKASTMNSRDDKDADATAQTAPNTGTPPAAGGIFGNLPARTAAARAGRGCLIALPIVGIGFSAWTCVTDYRRVRHELKRACVGLALAEMSFQREAGRKGDSXXXXXXXXXNSATRPTLDASPVRSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRMRQISGRRRTAAEALARG 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig102.231.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.460e-15495.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.960e-13584.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig102contigEcto-sp9_F_contig102:49936..51554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_004760.1
Exons2
Model size1193
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig102.231.1prot_Ecto-sp9_F_contig102.231.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig102 50727..51554 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928215.8778272-UTR-Ecto-sp9_F_contig102:49935..502351622928215.8778272-UTR-Ecto-sp9_F_contig102:49935..50235Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig102 49936..50235 -
1692277798.8161058-UTR-Ecto-sp9_F_contig102:49935..502351692277798.8161058-UTR-Ecto-sp9_F_contig102:49935..50235Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig102 49936..50235 -
1622928215.89304-UTR-Ecto-sp9_F_contig102:50661..507261622928215.89304-UTR-Ecto-sp9_F_contig102:50661..50726Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig102 50662..50726 -
1692277798.8261464-UTR-Ecto-sp9_F_contig102:50661..507261692277798.8261464-UTR-Ecto-sp9_F_contig102:50661..50726Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig102 50662..50726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928215.9089231-CDS-Ecto-sp9_F_contig102:50726..515541622928215.9089231-CDS-Ecto-sp9_F_contig102:50726..51554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 50727..51554 -
1692277798.8359656-CDS-Ecto-sp9_F_contig102:50726..515541692277798.8359656-CDS-Ecto-sp9_F_contig102:50726..51554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig102 50727..51554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig102.231.1

>prot_Ecto-sp9_F_contig102.231.1 ID=prot_Ecto-sp9_F_contig102.231.1|Name=mRNA_Ecto-sp9_F_contig102.231.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=276bp
MTRVVLQHHAAAAARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHYT
QCRSLIGSDKASTTSSRDDKDADATAQTAPTTGTPPAAGGIFGNLPARTA
AARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQ
RDAGRKGDSGGGGGDANSATRPSFDASPARSFSVALVADAGVLGFHLLAA
YGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYMAANRNAAEALARGG
GGTAPSARGDGGGESSGGGSHENTV*
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mRNA from alignment at Ecto-sp9_F_contig102:49936..51554-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig102.231.1 ID=mRNA_Ecto-sp9_F_contig102.231.1|Name=mRNA_Ecto-sp9_F_contig102.231.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1619bp|location=Sequence derived from alignment at Ecto-sp9_F_contig102:49936..51554- (Ectocarpus species9 EcSCA_722f female)
ATGACTCGTGTTGTTCTTCAACACCATGCCGCCGCGGCAGCCCGTTTGTT
CCTTCGACGTGCGGCGGCCGTAAACAGCAGCCACCTCCGACCATCCTCTC
CTACGGGCGCCTCGATTAGCCAGCAGCAGGCGCGAACGTTGCACTACACT
CAGTGTCGTAGCCTCATTGGATCCGACAAGGCATCAACGACGAGCAGCAG
GGACGACAAAGACGCTGATGCAACCGCACAGACGGCGCCTACTACCGGCA
CACCTCCCGCCGCCGGGGGCATCTTCGGAAACCTGCCCGCTCGCACAGCC
GCCGCCCGAGCGGGCCGCGGCTGCCTGATAGCCCTCCCTCTCGCGGGCAT
CGGGTTTTCGGCCTGGACTTGCGTTACGGACTATCGCAGGGTCCGACACG
AGCTGAAGCTCGCGCGCGTGGGCCTCGCCCTCGCCGAGATGAGCTACCAG
CGGGACGCCGGCCGGAAGGGAGACAGCGGCGGCGGCGGCGGCGACGCGAA
CTCGGCAACTCGGCCGTCGTTCGACGCTTCTCCCGCGCGCTCCTTCAGCG
TTGCGTTGGTGGCAGACGCAGGCGTCTTGGGCTTCCACCTTCTCGCGGCG
TACGGGTTGTGGCACGGCTGGGATCCGGACCCCATCGTCAACGCAGAGAT
AGGCAACCTGGTCGCCGCGGTCGTGTCGACGGGAGGGGGGTTGCGCGGGG
AGTATATGGCGGCCAACCGTAACGCCGCGGAGGCGTTGGCACGCGGGGGA
GGAGGTACGGCCCCTAGCGCTCGAGGCGACGGCGGCGGCGAGAGCAGCGG
CGGGGGCAGCCACGAGAATACCGTCTAGCCAAGGAGGACCGGCGATCCCT
CCAACAGCGCCGGCGGGAGCATCTTACTGCATCGGAAGATATGGTGCGGC
AGATTTTGGAAGCAGAGGTAGCGGTGGAGGAGCCCAACTTGTTGTGCTAC
GTATCTGAGAGAGGCGGGTGTTGCACACCTTAGAGGTATGGTGTAGGGTT
CAACTTGTGGAAAACTGAAGGAAGGGGTTGGCGACGGCTATGAACCTACA
TTGAGGAGGAGGAGGCCACCAAAGATTTGTGGCGGGAGCTTGGCTTCCTT
CACGAAGCGACCGTTTTCTGCGAATTGGGCAACATAATCGATAAACTGAT
AAACGTCTTGTGCTTCGGTTGCCCTTTCCTGGTCGGTGCATAGCATGTTT
CAGTCATGGAGGTTTTCGGTCAGCTCGAGAAGTTGTCCTCCTTTGCATCA
GAACAGTGTCGAACGATGAGTTTCTCACCTTTTCTCATGTCTCGGCTCCT
TGGCTTCGTCATGGCGCAGGTGTGGTACCATTTGGGTCGTTACGGAAGCC
TTTCAGCTCTTGGAGGGCTTCTCCAATACTTGCCACTTTGAGTTGCAAGT
GATGGCGACAACAGTACATCCTTGGTGACACCGTTAGCTCGTGCTTGGGG
AGGGGACGACTTTGCGAAGGCCTTGTATGAGACCCTTCGCACTCGTGTGC
TGAGCTCTGAGGCGCCCTTGTGTCGTTACCTTGTCCGGTGCTGAATCCCC
TTCAGGGGAGTCAGGTTCTGTGGCGACAAAATCTTCAAAGAGACGGTTTT
CTGCACGCTTTCTTGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig102:49936..51554-

>mRNA_Ecto-sp9_F_contig102.231.1 ID=mRNA_Ecto-sp9_F_contig102.231.1|Name=mRNA_Ecto-sp9_F_contig102.231.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1656bp|location=Sequence derived from alignment at Ecto-sp9_F_contig102:49936..51554- (Ectocarpus species9 EcSCA_722f female)
ATGACTCGTGTTGTTCTTCAACACCATGCCGCCGCGGCAGCCCGTTTGTT
CCTTCGACGTGCGGCGGCCGTAAACAGCAGCCACCTCCGACCATCCTCTC
CTACGGGCGCCTCGATTAGCCAGCAGCAGGCGCGAACGTTGCACTACACT
CAGTGTCGTAGCCTCATTGGATCCGACAAGGCATCAACGACGAGCAGCAG
GGACGACAAAGACGCTGATGCAACCGCACAGACGGCGCCTACTACCGGCA
CACCTCCCGCCGCCGGGGGCATCTTCGGAAACCTGCCCGCTCGCACAGCC
GCCGCCCGAGCGGGCCGCGGCTGCCTGATAGCCCTCCCTCTCGCGGGCAT
CGGGTTTTCGGCCTGGACTTGCGTTACGGACTATCGCAGGGTCCGACACG
AGCTGAAGCTCGCGCGCGTGGGCCTCGCCCTCGCCGAGATGAGCTACCAG
CGGGACGCCGGCCGGAAGGGAGACAGCGGCGGCGGCGGCGGCGACGCGAA
CTCGGCAACTCGGCCGTCGTTCGACGCTTCTCCCGCGCGCTCCTTCAGCG
TTGCGTTGGTGGCAGACGCAGGCGTCTTGGGCTTCCACCTTCTCGCGGCG
TACGGGTTGTGGCACGGCTGGGATCCGGACCCCATCGTCAACGCAGAGAT
AGGCAACCTGGTCGCCGCGGTCGTGTCGACGGGAGGGGGGTTGCGCGGGG
AGTATATGGCGGCCAACCGTAACGCCGCGGAGGCGTTGGCACGCGGGGGA
GGAGGTACGGCCCCTAGCGCTCGAGGCGACGGCGGCGGCGAGAGCAGCGG
CGGGGGCAGCCACGAGAATACCGTCTAGATGACTCGTGTTGTTCTTCAAC
ACCATGCCGCCGCGGCAGCCCGTTTGTTCCTTCGACGTGCGGCGGCCGTA
AACAGCAGCCACCTCCGACCATCCTCTCCTACGGGCGCCTCGATTAGCCA
GCAGCAGGCGCGAACGTTGCACTACACTCAGTGTCGTAGCCTCATTGGAT
CCGACAAGGCATCAACGACGAGCAGCAGGGACGACAAAGACGCTGATGCA
ACCGCACAGACGGCGCCTACTACCGGCACACCTCCCGCCGCCGGGGGCAT
CTTCGGAAACCTGCCCGCTCGCACAGCCGCCGCCCGAGCGGGCCGCGGCT
GCCTGATAGCCCTCCCTCTCGCGGGCATCGGGTTTTCGGCCTGGACTTGC
GTTACGGACTATCGCAGGGTCCGACACGAGCTGAAGCTCGCGCGCGTGGG
CCTCGCCCTCGCCGAGATGAGCTACCAGCGGGACGCCGGCCGGAAGGGAG
ACAGCGGCGGCGGCGGCGGCGACGCGAACTCGGCAACTCGGCCGTCGTTC
GACGCTTCTCCCGCGCGCTCCTTCAGCGTTGCGTTGGTGGCAGACGCAGG
CGTCTTGGGCTTCCACCTTCTCGCGGCGTACGGGTTGTGGCACGGCTGGG
ATCCGGACCCCATCGTCAACGCAGAGATAGGCAACCTGGTCGCCGCGGTC
GTGTCGACGGGAGGGGGGTTGCGCGGGGAGTATATGGCGGCCAACCGTAA
CGCCGCGGAGGCGTTGGCACGCGGGGGAGGAGGTACGGCCCCTAGCGCTC
GAGGCGACGGCGGCGGCGAGAGCAGCGGCGGGGGCAGCCACGAGAATACC
GTCTAG
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