mRNA_Ecto-sp9_F_contig1019.221.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1019.221.1
Unique NamemRNA_Ecto-sp9_F_contig1019.221.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: SF3b1 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI14_ECTSI)

HSP 1 Score: 578 bits (1489), Expect = 1.110e-200
Identity = 313/314 (99.68%), Postives = 314/314 (100.00%), Query Frame = 1
Query:    1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
            ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLD+MFPPAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ
Sbjct:  155 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDAMFPPAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 468          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: TOG (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 533 bits (1372), Expect = 4.990e-176
Identity = 310/394 (78.68%), Postives = 312/394 (79.19%), Query Frame = 1
Query:    1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRR--------------------------------------------------------------WDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAG------------------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
            ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDV  R                                                              WDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGG+TPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLD+MFPPAG                  RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ
Sbjct:  155 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVIMRKAAKQAEEAASLKRSVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGITPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDAMFPPAGYRILDAPVGYAPIRTPSRRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 548          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Splicing (factor 3B subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L3_9STRA)

HSP 1 Score: 157 bits (396), Expect = 5.200e-39
Identity = 144/396 (36.36%), Postives = 177/396 (44.70%), Query Frame = 1
Query:    1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDV------------------------------------------------KRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTP---------------GQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPN-LAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAGR------------------LLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
            +SP RG DAF+G+TP RS++DIM  Q L ++K+                                                 +RRWD+            + TP +    S WDA+  TP                 GG       SRWDQTP R          +               G  +    G TP+A S+WDD TP+AGG  G             + TP  G TP               G    +   MTP     XXXXXXXX  GM TP+P  +A A    A EPMTPELAQ+MRWERE++ERNRP+TDE+LD++FP AG                   LLATPTPM MTPGFKM +TPAREEYG+ AT +E+ LPFIKPED Q
Sbjct:  137 LSPDRG-DAFSGKTPARSYKDIMINQDLDRQKEELLAAARKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRRRWDES-----------EATPVMKPSASGWDAE--TPXXXXXXXXXXXXXXXXAGGK------SRWDQTPVRGDGAAAALGGAXXXXXXXXXXXXXXXGADS----GATPRA-SRWDDATPKAGGAGGV------------EATPGVGATPXXXXXXXXXXXXMVGGVRATSLIGMTPGGAMTXXXXXXXX--GMATPTPGAIAAAQAAAAQEPMTPELAQRMRWEREVEERNRPMTDEELDALFPDAGYKILPAPATYVPIRTPSRLLLATPTPMGMTPGFKMAETPAREEYGIAATQSETGLPFIKPEDMQ 493          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Hypothetical (protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVL6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.640e-33
Identity = 141/363 (38.84%), Postives = 171/363 (47.11%), Query Frame = 1
Query:    1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDV-------------------------KRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGG-GFGAGETPSGRKKSRWDQTP--QAGVTPGQTPVAGAM-MTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAG------------------RLLATPTPMP--MTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
            +SP RG D F  +TP  S+ + M  Q L KE+                           KRRWDD  T  A        TP V    SDWD   ATP    RG         +          S+WD TP          R  +RWD+      TP A GV+      TP   S+WD + P  GG G   GETP+ +KKS        Q+  +   TP  GA       XXXXXXXXXXXX      +PN A          M PE+AQQMRWE E+DERNRPL+D +LD+MFP  G                  +LLATPTPM   +TP F+MMQTP+RE Y VP TP++S++PFIKPED Q
Sbjct:   52 LSPGRG-DVFDNKTPMVSYGERMRSQELRKEEAQVRKLIAQKLEDAKNGGEALPVQEMKKRRWDDASTSAA--------TPLVNG--SDWDGADATPA-PHRGLQAHNDSDSS----SSILTSSKWDTTPLVTNGAAKTVR--NRWDE------TPAAAGVSA-----TP---SRWDMQAPSGGGKGVAPGETPTTKKKSXXXXXXXXQSAASVASTPAGGAFGQYVGGXXXXXXXXXXXXXXXXXXTPNAAAF--------MAPEMAQQMRWEAEVDERNRPLSDVELDAMFPATGYKILDPPPSYVPIRTPQRKLLATPTPMGAGVTPAFQMMQTPSRESYAVPLTPSDSAMPFIKPEDQQ 374          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Uncharacterized (protein AlNc14C26G2567 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6T1_9STRA)

HSP 1 Score: 139 bits (350), Expect = 6.330e-33
Identity = 125/342 (36.55%), Postives = 161/342 (47.08%), Query Frame = 1
Query:    1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEK-DVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSK------WDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXS--GMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP------------------PAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESS-LPFIKPEDYQ 942
            +SP R  D F G+TP RS++DIM  Q L  E+ +V R+           +    E  +  + +     +     R  R    G   G            S WD   S  A+++ + R SSRWD      VTP+AGG             SK      WD             ETP    +S+WDQT    +    TP+ G     XXXXXXX          G +TPS  +    L GA   MTPE+AQ++RWERE++ERNRPL DE+LD+MFP                  P+ +L++TPTPM  TPGF M  TPAREEYG+P   T S  +PFIKPEDYQ
Sbjct:  100 LSPERS-DVFDGKTPQRSYKDIMQSQQLEAERAEVIRK-----------IQKQQEEQSANEKLEXXTGNEKVKKRKMRWDDPGSATGSGIDAKTDVESSSGWDTDESSMAEDSNLGR-SSRWD------VTPLAGGQEGSXXXXXXATKSKGEKIGRWD-------------ETPKASSESKWDQTTVTPIANMMTPLGGTSKRSXXXXXXXSSNDIATPQRGQMTPSGAITNDLLTGA---MTPEMAQRLRWEREIEERNRPLADEELDTMFPSTGYKVLDPPASYIPIRTPSRKLMSTPTPMGGTPGFMMQSTPAREEYGIPIPSTPSGDVPFIKPEDYQ 406          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Sf3b1 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NDD3_SYMMI)

HSP 1 Score: 138 bits (348), Expect = 1.120e-32
Identity = 106/249 (42.57%), Postives = 127/249 (51.00%), Query Frame = 1
Query:  331 ETPVTRRSSRWDQSGGGGVTPMAGG-------VTPGGVGDTPKAGSKWDDETPRAGGGFGAGETP---------------SGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQA-----GLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP---------PAG---------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
            E PV ++  RWD S G   TP+ G         +    G T  + S+WD  TP   GG  AG                     K S WD TP        TP  G     XXXXXX         GM TP+   A        L GA   MTPE+AQ+MRWE E++ERNRPLTD++LD+MFP         PAG         +L+ATPTPM  TPGF + QTPARE YGVPATP+ES++PF+KPEDYQ
Sbjct:   24 EPPVEKKRRRWDDSAGN-ATPLVGSDWDKVDTTSTSAAGSTNSSSSRWD-VTPVGTGGGAAGRVXXXXXXXXXXXXXXXXGSGKVSSWDATPSGADMTDATP-GGTKKRXXXXXXXDARGGMTPGGMSTPAGGAAMGMQTPMALMGA---MTPEMAQRMRWEAEIEERNRPLTDDELDAMFPATGFKILDPPAGYVPIRTPKRKLMATPTPMGQTPGFSIQQTPARESYGVPATPSESAMPFVKPEDYQ 266          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6C6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.190e-32
Identity = 88/176 (50.00%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  472 AGGGFGA--GETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAG------------------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDY 939
            AGGG     G TP+GRK+SRWD+TP AG     TP A    TP XXX           G +TP       G+     PMTPE+AQ++RWERE++ERNR +TDE+LD+MFPP G                  +L+ATPTP+  TPGF M  TPARE+YGVPAT  E+ LPFIKPEDY
Sbjct:  340 AGGGEAETPGATPAGRKRSRWDETPVAGAA---TPAA----TPGXXXLGAAGAAGMGLGGMTP-------GMVDPSVPMTPEMAQRLRWEREIEERNRYMTDEELDAMFPPTGYKILDPPPGYQPITTPSRKLMATPTPLGSTPGFTMAATPAREDYGVPATAGETGLPFIKPEDY 501          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: SF3b1 (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G627_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.270e-29
Identity = 126/352 (35.80%), Postives = 162/352 (46.02%), Query Frame = 1
Query:    1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEK-----DVKRRWDDGGTPVAGGVAD---GDETPAVGKIVSDWD---------ADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXS--GMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP------------------PAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESS-LPFIKPEDYQ 942
            +SP R  D F G+TP RS++DIM  Q L  E+      ++++ D+    +A G  +   G+E   V K    WD          D  T V SS G                      WD T      E P + RSSRWD      +TP+AGG    G        SK   E            TP   K  +   TP   +    TP+AG     XXXXX            G +TPS  ++   L GA   MTPE+AQ++RWERE++ERNRPL +E+LD+MFP                  P+ +L+ TPTPM  TPGF M  TPARE+YG+P   T S  +PFIKPEDYQ
Sbjct:  100 LSPERS-DVFDGKTPQRSYKDIMQSQQLEAERAEVIRKIQKQQDE---EIANGKLEKPAGNEKEKVKKRKMRWDDPGSGSGSGIDAKTDVESSSG----------------------WD-TDESSMAEDPNSGRSSRWD------ITPVAGGQE--GXXXXXXXASKNLREKSGXXXXXXXXXTPGQSKXXQTTVTPTPNL---MTPLAGTSKXXXXXXXPIASNDVATPQRGQMTPSGVISNDLLTGA---MTPEMAQRLRWEREIEERNRPLAEEELDAMFPNTGYKILDPPASYIPIRTPSRKLMTTPTPMGGTPGFMMQSTPAREDYGIPIPSTPSGDVPFIKPEDYQ 410          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: TOG (domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QC94_9BACT)

HSP 1 Score: 129 bits (323), Expect = 2.340e-29
Identity = 84/182 (46.15%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  451 WDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP---------PAG---------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
            WDD TP   G   AG       + R          PG         TP              S M TPSP+   AG      PMTPELAQ+MRWERE++ERN PL+DE+LD+MFP         PAG         +LLATPTPM  TPGF +  TPARE+Y VPATP E++LPFIKPEDYQ
Sbjct:  284 WDDATPDTXGAAAAG-------RKRXXXXXXXVTAPGGAXXXXXXXTPVGL-----------SDMPTPSPSSLAAG------PMTPELAQRMRWEREIEERNHPLSDEELDAMFPESGYKILEPPAGYVPIRTPSRKLLATPTPMGGTPGFSIQSTPAREDYAVPATPNETNLPFIKPEDYQ 441          
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Splicing (factor 3B subunit 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7D7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.360e-29
Identity = 134/350 (38.29%), Postives = 162/350 (46.29%), Query Frame = 1
Query:   19 GDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVT--RRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKK------------SRWDQTPQ--AGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPM----TPELAQQMRWERELDERNRPLTDEDLDSMFP------------------PAGRLLATPTPMPMTPGFKMMQTPAREEYGVP-ATPTES---SLPFIKPEDYQ 942
            GDAF  +TP RS+++IM  Q L +E+            V   +    E               ATP R  +                      RWD       QE P T     S WD +    V+ +A          TP  GS   D TP AG   GA  TP GRK             S+WD TP    G TP  T           XXXXXXXXXXXXS M TP  NL     G   + M    TPELAQ++RWERE+++RNRP+TDE+LD++FP                  P+ +LLATPTPM  TPGF M  TPARE+YGVP ATP+ S   ++PFIKPEDYQ
Sbjct:  115 GDAFGDKTPARSYKEIMQTQQLEQER----------AEVVRKIQQKREXXXXXXXXXXXXDVDATPKRRRKRM--------------------RWD-------QEGPTTDGETQSEWDTASESSVSSVAA---------TPTRGSSRWDATPVAGSTVGA--TP-GRKNXXXXXXXASSGTSKWDATPVNLGGATPVGT-----------XXXXXXXXXXXXSDMATPGKNLQMTPGGSMTDIMSGALTPELAQRLRWEREIEDRNRPMTDEELDALFPATGYKILDPPASYVPIRTPSRKLLATPTPMGQTPGFAMQATPAREDYGVPVATPSGSDGSAMPFIKPEDYQ 404          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SF3b11.110e-20099.68domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
TOG4.990e-17678.68domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Splicing5.200e-3936.36factor 3B subunit 1 n=1 Tax=Tribonema minus TaxID=... [more]
Hypothetical4.640e-3338.84protein n=2 Tax=Spumella elongata TaxID=89044 RepI... [more]
Uncharacterized6.330e-3336.55protein AlNc14C26G2567 n=1 Tax=Albugo laibachii Nc... [more]
Sf3b11.120e-3242.57protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Hypothetical1.190e-3250.00protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
SF3b11.270e-2935.80domain-containing protein n=1 Tax=Albugo candida T... [more]
TOG2.340e-2946.15domain-containing protein n=1 Tax=Phycisphaeraceae... [more]
Splicing3.360e-2938.29factor 3B subunit 1 (Fragment) n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1019contigEcto-sp9_F_contig1019:24649..27085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score585.5
Seed ortholog evalue1.5e-164
Seed eggNOG ortholog2880.D7FI14
Preferred nameSF3B1
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5181@1,KOG0213@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSplicing factor 3B subunit 1
Ec32 orthologEc-12_006680.1
Exons4
Model size972
Cds size972
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1019.221.1prot_Ecto-sp9_F_contig1019.221.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1019 24649..27085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.2331848-CDS-Ecto-sp9_F_contig1019:24648..248171622928214.2331848-CDS-Ecto-sp9_F_contig1019:24648..24817Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 24649..24817 -
1692277797.9724684-CDS-Ecto-sp9_F_contig1019:24648..248171692277797.9724684-CDS-Ecto-sp9_F_contig1019:24648..24817Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 24649..24817 -
1622928214.252609-CDS-Ecto-sp9_F_contig1019:25278..255471622928214.252609-CDS-Ecto-sp9_F_contig1019:25278..25547Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 25279..25547 -
1692277797.9861345-CDS-Ecto-sp9_F_contig1019:25278..255471692277797.9861345-CDS-Ecto-sp9_F_contig1019:25278..25547Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 25279..25547 -
1622928214.2656307-CDS-Ecto-sp9_F_contig1019:26114..265461622928214.2656307-CDS-Ecto-sp9_F_contig1019:26114..26546Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 26115..26546 -
1692277797.9952488-CDS-Ecto-sp9_F_contig1019:26114..265461692277797.9952488-CDS-Ecto-sp9_F_contig1019:26114..26546Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 26115..26546 -
1622928214.2830245-CDS-Ecto-sp9_F_contig1019:26983..270851622928214.2830245-CDS-Ecto-sp9_F_contig1019:26983..27085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 26984..27085 -
1692277798.0039-CDS-Ecto-sp9_F_contig1019:26983..270851692277798.0039-CDS-Ecto-sp9_F_contig1019:26983..27085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 26984..27085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1019.221.1

>prot_Ecto-sp9_F_contig1019.221.1 ID=prot_Ecto-sp9_F_contig1019.221.1|Name=mRNA_Ecto-sp9_F_contig1019.221.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=324bp
ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVA
DGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGGGETPGRSR
WDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSK
WDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPGA
TPSAGWTPGQTPSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDE
RNRPLTDEDLDSMFPPAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATP
TESSLPFIKPEDYQVRRIISCRR*
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mRNA from alignment at Ecto-sp9_F_contig1019:24649..27085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1019.221.1 ID=mRNA_Ecto-sp9_F_contig1019.221.1|Name=mRNA_Ecto-sp9_F_contig1019.221.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2437bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:24649..27085- (Ectocarpus species9 EcSCA_722f female)
ATTTCTCCCATCCGAGGCGGAGACGCGTTTGCCGGGCAGACGCCGACGCG AAGCTTTAGGGATATCATGGCGGAGCAGGCCCTCGCCAAGGAGAAGGATG TGGTAAGTGCCCTTGGTTTGCTGGCTTGAGTGCGACCATGCACGAGTTTG GGTTGTGACTCCTGTCTGAAGTCGCACATACGTCTCTTTGGCCGATATTT ACTTTATCTGTTTTGCTCCTGTTTGATAGGAGCATGCATATACGTACGTG TTTTGTATCAGGTAATTTTTTGGCGATGGATACCGTGTGGCTTGAGTTGG ACACGCCGCTTCACACACACACACCTAACGCCCCCCCGTCACGAACGTCG CAGATCATGCGGAAGGCTGCCAAGCAGGCGGAAGAGGCAGCCAGCCTCAA GCGGTCGGTGCCATCCTCTTCCGCCGGAGGCGCCGCCGGCGCCGCCGGAG TGTACGGCCCGGGAGCCGGGGCCGCGGCGGCGGCGGCAGCGGCATCGACA ACGCCTCGCGTCGGCGGCGGCGCGGGCTCTGTCCGCAAGAAGCGGCGGTG GGACGACGGGGGGACCCCGGTCGCCGGTGGCGTCGCGGACGGGGACGAGA CCCCCGCGGTCGGCAAGATCGTGTCCGACTGGGACGCGGACGTGGCGACG CCGGTGCGAAGCAGCCGCGGCTTTGGGGGCGGGGAGACCCCCGGGAGGAC GCCCGGGGGCGGCGGAGAGACCCCCGGTCGCAGCCGGTGGGATCAAACCC CTAGCCGCGATGCCCAGGAGACCCCCGTCACCAGGCGTTCCAGCAGGTGG GACCAGAGCGGGGGCGGGGGCGTGACGCCCATGGCAGGAGGCGTTACCCC CGGCGGGGTCGGGGACACTCCCAAGGCCGGGTCGAAGTGGGACGACGAGA CTCCGAGGGCGGGGGGCGGGTTCGGGGCAGGGGAGACGCCCTCGGGGCGT AAGAAGTCTCGGTGGGATCAGGTGGGCAGCGGGTGTTCGTATGTTGCGTT TTATGCACATGCCGCCATTTTTAAACCCTAACCCTATGCATAGCCTTAAG AAGTACATAAGTTTACGCAATGTTATTTGTTTGTTTTGGTGTCGACGTGG GCGAAGGGTGCTCCGGGATAAGGTATTGTAGTGTCGTTGCCTCCCTTCGT CGTTTGTGACGGCGAGGCTTGTGCTGTTGGGGTTCCTTCCCTCCCCCCCT CCGCGCGATTTGATTGTTGTCTCTTTACCCCTTCTTGAGAACGTGCGCGG TGTCGGGGTGCAGAAGCCTTGGACACGAGAGAGCGCCGCCTCATTCCCAC CTTTGAATATCGTGTTTTTGTTGCTCACTACGGAGCCAGTTCCGCCCGCT GCTCTCCCCCACCCTCTCCTCGCGAACGATGAGATAAGAGAGTACGGCGC TGCTCACCGGATTGTTTATCTCTCCCCCCCGGCATTGTAAGGATGCGAGG CCAATGGTCTAACGGCTACGGTGCTGCTCACCTAACTCTTTAACCCCCCC CGCCCCCCCCTCTCTCCCCCTTCCCGCCCTCCTCGCAGACCCCTCAAGCT GGCGTAACCCCGGGGCAGACCCCGGTGGCGGGCGCCATGATGACCCCCGG CGCCACGCCGTCCGCGGGGTGGACACCCGGGCAGACCCCCTCGGGGATGG TGACTCCCAGCCCTAATCTCGCGCAGGCGGGGCTGGGCGGGGCCGGGGAG CCGATGACTCCGGAGCTGGCTCAACAGATGCGGTGGGAAAGAGAGCTCGA CGAGAGGAACCGCCCGCTGACCGACGAGGATCTGGACTCGATGTTCCCGC CGGCGGGGTGAGAAGGGGGAGGGGGGTTGGGGAGAGGGGCATGGGGTGGT TTGATGGGTGGGTGGGTGGGGGAAGGTAGTGAGATGCATTACGGAAGAAG AGATCGGGGTATCGGTGGTGGTGTAAGCTGTAAGCGGTGGTCACGGAGGC GAGTTATACCGCTGTATCCGAGGGGGGAGGAGGGGAGGGAGGGGGGGCGA GAATAATTTTTGTGCTTCGTCGGTTTGGCAAGTGTGTACCCACCCTTTGT TGTGTTGCTGTTGGGCGAGAAAAATGTTGTGCTTCCGTCGGTTTGGCAAG TTTGTACCCACCCTTTGTTGCTGTTGATCGTCTCCTTAGCGAGTGTTGCC TACTTGAACTCTATATGCGTTTACATGAGCACCCCCCCCCCCCCTTCAAT CTGTCACACGGCAGGTACCGAATCCTAGACGCGCCGGTGGGGTACGCGCC CATCCGCACGCCGTCAAGACGGTTGCTGGCGACTCCCACGCCGATGCCGA TGACGCCCGGTTTCAAGATGATGCAGACACCGGCCAGGGAGGAGTATGGG GTGCCGGCGACGCCCACGGAGAGCTCTCTGCCCTTCATCAAGCCGGAGGA TTACCAGGTGAGACGAATTATTTCTTGTCGGCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1019:24649..27085-

>mRNA_Ecto-sp9_F_contig1019.221.1 ID=mRNA_Ecto-sp9_F_contig1019.221.1|Name=mRNA_Ecto-sp9_F_contig1019.221.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:24649..27085- (Ectocarpus species9 EcSCA_722f female)
ATTTCTCCCATCCGAGGCGGAGACGCGTTTGCCGGGCAGACGCCGACGCG
AAGCTTTAGGGATATCATGGCGGAGCAGGCCCTCGCCAAGGAGAAGGATG
TGATTTCTCCCATCCGAGGCGGAGACGCGTTTGCCGGGCAGACGCCGACG
CGAAGCTTTAGGGATATCATGGCGGAGCAGGCCCTCGCCAAGGAGAAGGA
TGTGAAGCGGCGGTGGGACGACGGGGGGACCCCGGTCGCCGGTGGCGTCG
CGGACGGGGACGAGACCCCCGCGGTCGGCAAGATCGTGTCCGACTGGGAC
GCGGACGTGGCGACGCCGGTGCGAAGCAGCCGCGGCTTTGGGGGCGGGGA
GACCCCCGGGAGGACGCCCGGGGGCGGCGGAGAGACCCCCGGTCGCAGCC
GGTGGGATCAAACCCCTAGCCGCGATGCCCAGGAGACCCCCGTCACCAGG
CGTTCCAGCAGGTGGGACCAGAGCGGGGGCGGGGGCGTGACGCCCATGGC
AGGAGGCGTTACCCCCGGCGGGGTCGGGGACACTCCCAAGGCCGGGTCGA
AGTGGGACGACGAGACTCCGAGGGCGGGGGGCGGGTTCGGGGCAGGGGAG
ACGCCCTCGGGGCGTAAGAAGTCTCGGTGGGATCAGAAGCGGCGGTGGGA
CGACGGGGGGACCCCGGTCGCCGGTGGCGTCGCGGACGGGGACGAGACCC
CCGCGGTCGGCAAGATCGTGTCCGACTGGGACGCGGACGTGGCGACGCCG
GTGCGAAGCAGCCGCGGCTTTGGGGGCGGGGAGACCCCCGGGAGGACGCC
CGGGGGCGGCGGAGAGACCCCCGGTCGCAGCCGGTGGGATCAAACCCCTA
GCCGCGATGCCCAGGAGACCCCCGTCACCAGGCGTTCCAGCAGGTGGGAC
CAGAGCGGGGGCGGGGGCGTGACGCCCATGGCAGGAGGCGTTACCCCCGG
CGGGGTCGGGGACACTCCCAAGGCCGGGTCGAAGTGGGACGACGAGACTC
CGAGGGCGGGGGGCGGGTTCGGGGCAGGGGAGACGCCCTCGGGGCGTAAG
AAGTCTCGGTGGGATCAGACCCCTCAAGCTGGCGTAACCCCGGGGCAGAC
CCCGGTGGCGGGCGCCATGATGACCCCCGGCGCCACGCCGTCCGCGGGGT
GGACACCCGGGCAGACCCCCTCGGGGATGGTGACTCCCAGCCCTAATCTC
GCGCAGGCGGGGCTGGGCGGGGCCGGGGAGCCGATGACTCCGGAGCTGGC
TCAACAGATGCGGTGGGAAAGAGAGCTCGACGAGAGGAACCGCCCGCTGA
CCGACGAGGATCTGGACTCGATGTTCCCGCCGGCGGGACCCCTCAAGCTG
GCGTAACCCCGGGGCAGACCCCGGTGGCGGGCGCCATGATGACCCCCGGC
GCCACGCCGTCCGCGGGGTGGACACCCGGGCAGACCCCCTCGGGGATGGT
GACTCCCAGCCCTAATCTCGCGCAGGCGGGGCTGGGCGGGGCCGGGGAGC
CGATGACTCCGGAGCTGGCTCAACAGATGCGGTGGGAAAGAGAGCTCGAC
GAGAGGAACCGCCCGCTGACCGACGAGGATCTGGACTCGATGTTCCCGCC
GGCGGGACGGTTGCTGGCGACTCCCACGCCGATGCCGATGACGCCCGGTT
TCAAGATGATGCAGACACCGGCCAGGGAGGAGTATGGGGTGCCGGCGACG
CCCACGGAGAGCTCTCTGCCCTTCATCAAGCCGGAGGATTACCAGGTGAG
ACGAATTATTTCTTGTCGGCGTTGAACGGTTGCTGGCGACTCCCACGCCG
ATGCCGATGACGCCCGGTTTCAAGATGATGCAGACACCGGCCAGGGAGGA
GTATGGGGTGCCGGCGACGCCCACGGAGAGCTCTCTGCCCTTCATCAAGC
CGGAGGATTACCAGGTGAGACGAATTATTTCTTGTCGGCGTTGA
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