mRNA_Ecto-sp9_F_contig1019.221.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: SF3b1 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI14_ECTSI) HSP 1 Score: 578 bits (1489), Expect = 1.110e-200 Identity = 313/314 (99.68%), Postives = 314/314 (100.00%), Query Frame = 1
Query: 1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLD+MFPPAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ
Sbjct: 155 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDAMFPPAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 468
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: TOG (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE) HSP 1 Score: 533 bits (1372), Expect = 4.990e-176 Identity = 310/394 (78.68%), Postives = 312/394 (79.19%), Query Frame = 1
Query: 1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRR--------------------------------------------------------------WDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAG------------------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDV R WDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGG+TPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLD+MFPPAG RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ
Sbjct: 155 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVIMRKAAKQAEEAASLKRSVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGITPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDAMFPPAGYRILDAPVGYAPIRTPSRRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 548
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Splicing (factor 3B subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L3_9STRA) HSP 1 Score: 157 bits (396), Expect = 5.200e-39 Identity = 144/396 (36.36%), Postives = 177/396 (44.70%), Query Frame = 1
Query: 1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDV------------------------------------------------KRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTP---------------GQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPN-LAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAGR------------------LLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
+SP RG DAF+G+TP RS++DIM Q L ++K+ +RRWD+ + TP + S WDA+ TP GG SRWDQTP R + G + G TP+A S+WDD TP+AGG G + TP G TP G + MTP XXXXXXXX GM TP+P +A A A EPMTPELAQ+MRWERE++ERNRP+TDE+LD++FP AG LLATPTPM MTPGFKM +TPAREEYG+ AT +E+ LPFIKPED Q
Sbjct: 137 LSPDRG-DAFSGKTPARSYKDIMINQDLDRQKEELLAAARKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRRRWDES-----------EATPVMKPSASGWDAE--TPXXXXXXXXXXXXXXXXAGGK------SRWDQTPVRGDGAAAALGGAXXXXXXXXXXXXXXXGADS----GATPRA-SRWDDATPKAGGAGGV------------EATPGVGATPXXXXXXXXXXXXMVGGVRATSLIGMTPGGAMTXXXXXXXX--GMATPTPGAIAAAQAAAAQEPMTPELAQRMRWEREVEERNRPMTDEELDALFPDAGYKILPAPATYVPIRTPSRLLLATPTPMGMTPGFKMAETPAREEYGIAATQSETGLPFIKPEDMQ 493
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Hypothetical (protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVL6_9STRA) HSP 1 Score: 139 bits (351), Expect = 4.640e-33 Identity = 141/363 (38.84%), Postives = 171/363 (47.11%), Query Frame = 1
Query: 1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDV-------------------------KRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGG-GFGAGETPSGRKKSRWDQTP--QAGVTPGQTPVAGAM-MTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAG------------------RLLATPTPMP--MTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
+SP RG D F +TP S+ + M Q L KE+ KRRWDD T A TP V SDWD ATP RG + S+WD TP R +RWD+ TP A GV+ TP S+WD + P GG G GETP+ +KKS Q+ + TP GA XXXXXXXXXXXX +PN A M PE+AQQMRWE E+DERNRPL+D +LD+MFP G +LLATPTPM +TP F+MMQTP+RE Y VP TP++S++PFIKPED Q
Sbjct: 52 LSPGRG-DVFDNKTPMVSYGERMRSQELRKEEAQVRKLIAQKLEDAKNGGEALPVQEMKKRRWDDASTSAA--------TPLVNG--SDWDGADATPA-PHRGLQAHNDSDSS----SSILTSSKWDTTPLVTNGAAKTVR--NRWDE------TPAAAGVSA-----TP---SRWDMQAPSGGGKGVAPGETPTTKKKSXXXXXXXXQSAASVASTPAGGAFGQYVGGXXXXXXXXXXXXXXXXXXTPNAAAF--------MAPEMAQQMRWEAEVDERNRPLSDVELDAMFPATGYKILDPPPSYVPIRTPQRKLLATPTPMGAGVTPAFQMMQTPSRESYAVPLTPSDSAMPFIKPEDQQ 374
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Uncharacterized (protein AlNc14C26G2567 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6T1_9STRA) HSP 1 Score: 139 bits (350), Expect = 6.330e-33 Identity = 125/342 (36.55%), Postives = 161/342 (47.08%), Query Frame = 1
Query: 1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEK-DVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSK------WDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXS--GMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP------------------PAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESS-LPFIKPEDYQ 942
+SP R D F G+TP RS++DIM Q L E+ +V R+ + E + + + + R R G G S WD S A+++ + R SSRWD VTP+AGG SK WD ETP +S+WDQT + TP+ G XXXXXXX G +TPS + L GA MTPE+AQ++RWERE++ERNRPL DE+LD+MFP P+ +L++TPTPM TPGF M TPAREEYG+P T S +PFIKPEDYQ
Sbjct: 100 LSPERS-DVFDGKTPQRSYKDIMQSQQLEAERAEVIRK-----------IQKQQEEQSANEKLEXXTGNEKVKKRKMRWDDPGSATGSGIDAKTDVESSSGWDTDESSMAEDSNLGR-SSRWD------VTPLAGGQEGSXXXXXXATKSKGEKIGRWD-------------ETPKASSESKWDQTTVTPIANMMTPLGGTSKRSXXXXXXXSSNDIATPQRGQMTPSGAITNDLLTGA---MTPEMAQRLRWEREIEERNRPLADEELDTMFPSTGYKVLDPPASYIPIRTPSRKLMSTPTPMGGTPGFMMQSTPAREEYGIPIPSTPSGDVPFIKPEDYQ 406
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Sf3b1 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NDD3_SYMMI) HSP 1 Score: 138 bits (348), Expect = 1.120e-32 Identity = 106/249 (42.57%), Postives = 127/249 (51.00%), Query Frame = 1
Query: 331 ETPVTRRSSRWDQSGGGGVTPMAGG-------VTPGGVGDTPKAGSKWDDETPRAGGGFGAGETP---------------SGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQA-----GLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP---------PAG---------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
E PV ++ RWD S G TP+ G + G T + S+WD TP GG AG K S WD TP TP G XXXXXX GM TP+ A L GA MTPE+AQ+MRWE E++ERNRPLTD++LD+MFP PAG +L+ATPTPM TPGF + QTPARE YGVPATP+ES++PF+KPEDYQ
Sbjct: 24 EPPVEKKRRRWDDSAGN-ATPLVGSDWDKVDTTSTSAAGSTNSSSSRWD-VTPVGTGGGAAGRVXXXXXXXXXXXXXXXXGSGKVSSWDATPSGADMTDATP-GGTKKRXXXXXXXDARGGMTPGGMSTPAGGAAMGMQTPMALMGA---MTPEMAQRMRWEAEIEERNRPLTDDELDAMFPATGFKILDPPAGYVPIRTPKRKLMATPTPMGQTPGFSIQQTPARESYGVPATPSESAMPFVKPEDYQ 266
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6C6_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.190e-32 Identity = 88/176 (50.00%), Postives = 106/176 (60.23%), Query Frame = 1
Query: 472 AGGGFGA--GETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFPPAG------------------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDY 939
AGGG G TP+GRK+SRWD+TP AG TP A TP XXX G +TP G+ PMTPE+AQ++RWERE++ERNR +TDE+LD+MFPP G +L+ATPTP+ TPGF M TPARE+YGVPAT E+ LPFIKPEDY
Sbjct: 340 AGGGEAETPGATPAGRKRSRWDETPVAGAA---TPAA----TPGXXXLGAAGAAGMGLGGMTP-------GMVDPSVPMTPEMAQRLRWEREIEERNRYMTDEELDAMFPPTGYKILDPPPGYQPITTPSRKLMATPTPLGSTPGFTMAATPAREDYGVPATAGETGLPFIKPEDY 501
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: SF3b1 (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G627_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.270e-29 Identity = 126/352 (35.80%), Postives = 162/352 (46.02%), Query Frame = 1
Query: 1 ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEK-----DVKRRWDDGGTPVAGGVAD---GDETPAVGKIVSDWD---------ADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXS--GMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP------------------PAGRLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESS-LPFIKPEDYQ 942
+SP R D F G+TP RS++DIM Q L E+ ++++ D+ +A G + G+E V K WD D T V SS G WD T E P + RSSRWD +TP+AGG G SK E TP K + TP + TP+AG XXXXX G +TPS ++ L GA MTPE+AQ++RWERE++ERNRPL +E+LD+MFP P+ +L+ TPTPM TPGF M TPARE+YG+P T S +PFIKPEDYQ
Sbjct: 100 LSPERS-DVFDGKTPQRSYKDIMQSQQLEAERAEVIRKIQKQQDE---EIANGKLEKPAGNEKEKVKKRKMRWDDPGSGSGSGIDAKTDVESSSG----------------------WD-TDESSMAEDPNSGRSSRWD------ITPVAGGQE--GXXXXXXXASKNLREKSGXXXXXXXXXTPGQSKXXQTTVTPTPNL---MTPLAGTSKXXXXXXXPIASNDVATPQRGQMTPSGVISNDLLTGA---MTPEMAQRLRWEREIEERNRPLAEEELDAMFPNTGYKILDPPASYIPIRTPSRKLMTTPTPMGGTPGFMMQSTPAREDYGIPIPSTPSGDVPFIKPEDYQ 410
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: TOG (domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QC94_9BACT) HSP 1 Score: 129 bits (323), Expect = 2.340e-29 Identity = 84/182 (46.15%), Postives = 97/182 (53.30%), Query Frame = 1
Query: 451 WDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPMTPELAQQMRWERELDERNRPLTDEDLDSMFP---------PAG---------RLLATPTPMPMTPGFKMMQTPAREEYGVPATPTESSLPFIKPEDYQ 942
WDD TP G AG + R PG TP S M TPSP+ AG PMTPELAQ+MRWERE++ERN PL+DE+LD+MFP PAG +LLATPTPM TPGF + TPARE+Y VPATP E++LPFIKPEDYQ
Sbjct: 284 WDDATPDTXGAAAAG-------RKRXXXXXXXVTAPGGAXXXXXXXTPVGL-----------SDMPTPSPSSLAAG------PMTPELAQRMRWEREIEERNHPLSDEELDAMFPESGYKILEPPAGYVPIRTPSRKLLATPTPMGGTPGFSIQSTPAREDYAVPATPNETNLPFIKPEDYQ 441
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Match: Splicing (factor 3B subunit 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7D7_9STRA) HSP 1 Score: 127 bits (319), Expect = 3.360e-29 Identity = 134/350 (38.29%), Postives = 162/350 (46.29%), Query Frame = 1
Query: 19 GDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVADGDETPAVGKIVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVT--RRSSRWDQSGGGGVTPMAGGVTPGGVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKK------------SRWDQTPQ--AGVTPGQTPVAGAMMTPXXXXXXXXXXXXXXSGMVTPSPNLAQAGLGGAGEPM----TPELAQQMRWERELDERNRPLTDEDLDSMFP------------------PAGRLLATPTPMPMTPGFKMMQTPAREEYGVP-ATPTES---SLPFIKPEDYQ 942
GDAF +TP RS+++IM Q L +E+ V + E ATP R + RWD QE P T S WD + V+ +A TP GS D TP AG GA TP GRK S+WD TP G TP T XXXXXXXXXXXXS M TP NL G + M TPELAQ++RWERE+++RNRP+TDE+LD++FP P+ +LLATPTPM TPGF M TPARE+YGVP ATP+ S ++PFIKPEDYQ
Sbjct: 115 GDAFGDKTPARSYKEIMQTQQLEQER----------AEVVRKIQQKREXXXXXXXXXXXXDVDATPKRRRKRM--------------------RWD-------QEGPTTDGETQSEWDTASESSVSSVAA---------TPTRGSSRWDATPVAGSTVGA--TP-GRKNXXXXXXXASSGTSKWDATPVNLGGATPVGT-----------XXXXXXXXXXXXSDMATPGKNLQMTPGGSMTDIMSGALTPELAQRLRWEREIEDRNRPMTDEELDALFPATGYKILDPPASYVPIRTPSRKLLATPTPMGQTPGFAMQATPAREDYGVPVATPSGSDGSAMPFIKPEDYQ 404 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1019.221.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1019.221.1 >prot_Ecto-sp9_F_contig1019.221.1 ID=prot_Ecto-sp9_F_contig1019.221.1|Name=mRNA_Ecto-sp9_F_contig1019.221.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=324bp ISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVAGGVAback to top mRNA from alignment at Ecto-sp9_F_contig1019:24649..27085- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1019.221.1 ID=mRNA_Ecto-sp9_F_contig1019.221.1|Name=mRNA_Ecto-sp9_F_contig1019.221.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2437bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:24649..27085- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1019:24649..27085- >mRNA_Ecto-sp9_F_contig1019.221.1 ID=mRNA_Ecto-sp9_F_contig1019.221.1|Name=mRNA_Ecto-sp9_F_contig1019.221.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:24649..27085- (Ectocarpus species9 EcSCA_722f female)back to top |