mRNA_Ecto-sp9_F_contig10169.201.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K7_9PHAE) HSP 1 Score: 179 bits (455), Expect = 6.430e-51 Identity = 84/90 (93.33%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 4 VWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC 273
VWSTPEVVGVAPPPRTGHSAVLLPDGHTI IHGGWDPEDEGG VKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC
Sbjct: 652 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFIHGGWDPEDEGG-----VKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC 736
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL74_ECTSI) HSP 1 Score: 176 bits (447), Expect = 1.460e-50 Identity = 83/90 (92.22%), Postives = 83/90 (92.22%), Query Frame = 1
Query: 4 VWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC 273
VWSTPEVVGVAPPPRTGHSAVLLPDGHTI IHGGWDPEDEGG VKNFGDAYLLDTNLWEWTRGPEFLLGA EAGLRVGHTAVLARC
Sbjct: 503 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFIHGGWDPEDEGG-----VKNFGDAYLLDTNLWEWTRGPEFLLGAAEAGLRVGHTAVLARC 587
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WBH9_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 8.080e-22 Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPE--FLLGADEAG---LRVGHTAVLA 267
W W P + G P PRTGH+AVLL DG TILI+GGWDP DE ++ F D++LLDT++W W+ GP F+ G + RVGH+ +LA
Sbjct: 17 WNWFQPNISGKPPSPRTGHTAVLLEDGKTILIYGGWDPTDEEEEDETQI--FDDSFLLDTDMWSWSPGPNSRFVPGTESTNGGSKRVGHSGILA 108
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAZ5_THAOC) HSP 1 Score: 91.7 bits (226), Expect = 1.190e-19 Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEF-------LLGADEAGLRVGHTAVLARC 273
W WS P G P PRTGH+A LL DG T++I+GGWDP DE + + F D++LLDT W W +GP+ + + RVGH++VLA C
Sbjct: 414 WTWSHPSTTGPKPLPRTGHTATLLNDGTTLMIYGGWDPNDEAESDLI----FADSFLLDTCTWTWRKGPKAKFEKANSVTATNGGAARVGHSSVLAPC 507
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4U0_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.900e-18 Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = 1
Query: 1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGA---------DEAGLRVGHTAVL 264
W WS P + G AP PRTGH+A LL DG TI+++GGWDP +E + F +YLLDT+ W W RGP+ L G D R GHTA L
Sbjct: 533 WKWSNPTIRGNAPFPRTGHTATLLEDGKTIMVYGGWDPNEED-ELTGEDNIFKGSYLLDTHDWTWKRGPDPLSGGSGSANHIVEDCGAKRCGHTAAL 628
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Host (cell factor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA21_FISSO) HSP 1 Score: 87.0 bits (214), Expect = 5.010e-18 Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1
Query: 7 WSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVL 264
WS + G P PRTGH A + D TI I+GGWDP DE V F D++LL+T WEWT+GP+ +G+D++G RVGH AVL
Sbjct: 405 WSNVQTKGTPPCPRTGHVAFVWHD-DTICIYGGWDPNDENDVV------FADSFLLNTETWEWTKGPK--IGSDDSGARVGHRAVL 481
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2M544_PHYPR) HSP 1 Score: 82.8 bits (203), Expect = 1.610e-16 Identity = 46/90 (51.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLR--VGHTAVL 264
W W P VVGV P RTGHSA LL DG IL+ GGWDP+ + + V F DA+LLDTN WEW G+ + LR VGH AVL
Sbjct: 436 WSWFHPCVVGVPPQERTGHSATLLSDGK-ILVFGGWDPQRDDASAPTSV--FSDAFLLDTNTWEWQPAAYTDEGSADTALRGRVGHGAVL 522
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV08_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.060e-15 Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 1 WVWSTPEVVGV-APPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEW-TRGPEFLLGADEA---GLRVGHTAVLAR 270
W W P VVG P RTGH+A LL DG +I + GGWDP+DE F DA++LDT WEW G E G + G+ VGHTAV+AR
Sbjct: 524 WEWFHPMVVGCDRPAKRTGHAACLLQDGKSIWVQGGWDPQDE---TSEETTLFEDAFILDTETWEWRAAGAEVGAGEQQEEGPGVVVGHTAVVAR 615
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1K7_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 4.990e-15 Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLR--VGHTAVL 264
W W P VVGV P RTGHS+ LL +G ILI GGWDP+ + + V F DA+LLDT W+W + E LR VGH+AVL
Sbjct: 442 WKWDEPTVVGVPPQARTGHSSTLLQNGK-ILIFGGWDPQRDDASSPTSV--FDDAFLLDTQSWQWEPATFAETSSTEGALRGRVGHSAVL 528
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUM7_BRELC) HSP 1 Score: 78.2 bits (191), Expect = 6.720e-15 Identity = 43/88 (48.86%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVL 264
W W P V GV P RTGHSA LL DG+ + + GGWDP+ G V F DA++LDT WEW P F G + RVGH AVL
Sbjct: 407 WTWVYPNVTGVPPQERTGHSATLLKDGN-LFVFGGWDPQR--GDVNAPTSVFDDAFILDTKTWEWQPVP-FNDGRITSRGRVGHGAVL 490 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10169.201.1 >prot_Ecto-sp9_F_contig10169.201.1 ID=prot_Ecto-sp9_F_contig10169.201.1|Name=mRNA_Ecto-sp9_F_contig10169.201.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKback to top mRNA from alignment at Ecto-sp9_F_contig10169:117..853+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10169.201.1 ID=mRNA_Ecto-sp9_F_contig10169.201.1|Name=mRNA_Ecto-sp9_F_contig10169.201.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=737bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10169:117..853+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10169:117..853+ >mRNA_Ecto-sp9_F_contig10169.201.1 ID=mRNA_Ecto-sp9_F_contig10169.201.1|Name=mRNA_Ecto-sp9_F_contig10169.201.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10169:117..853+ (Ectocarpus species9 EcSCA_722f female)back to top |