mRNA_Ecto-sp9_F_contig10169.201.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10169.201.1
Unique NamemRNA_Ecto-sp9_F_contig10169.201.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K7_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 6.430e-51
Identity = 84/90 (93.33%), Postives = 84/90 (93.33%), Query Frame = 1
Query:    4 VWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC 273
            VWSTPEVVGVAPPPRTGHSAVLLPDGHTI IHGGWDPEDEGG     VKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC
Sbjct:  652 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFIHGGWDPEDEGG-----VKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC 736          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL74_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.460e-50
Identity = 83/90 (92.22%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    4 VWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC 273
            VWSTPEVVGVAPPPRTGHSAVLLPDGHTI IHGGWDPEDEGG     VKNFGDAYLLDTNLWEWTRGPEFLLGA EAGLRVGHTAVLARC
Sbjct:  503 VWSTPEVVGVAPPPRTGHSAVLLPDGHTIFIHGGWDPEDEGG-----VKNFGDAYLLDTNLWEWTRGPEFLLGAAEAGLRVGHTAVLARC 587          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WBH9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.080e-22
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPE--FLLGADEAG---LRVGHTAVLA 267
            W W  P + G  P PRTGH+AVLL DG TILI+GGWDP DE      ++  F D++LLDT++W W+ GP   F+ G +       RVGH+ +LA
Sbjct:   17 WNWFQPNISGKPPSPRTGHTAVLLEDGKTILIYGGWDPTDEEEEDETQI--FDDSFLLDTDMWSWSPGPNSRFVPGTESTNGGSKRVGHSGILA 108          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAZ5_THAOC)

HSP 1 Score: 91.7 bits (226), Expect = 1.190e-19
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEF-------LLGADEAGLRVGHTAVLARC 273
            W WS P   G  P PRTGH+A LL DG T++I+GGWDP DE  +  +    F D++LLDT  W W +GP+        +   +    RVGH++VLA C
Sbjct:  414 WTWSHPSTTGPKPLPRTGHTATLLNDGTTLMIYGGWDPNDEAESDLI----FADSFLLDTCTWTWRKGPKAKFEKANSVTATNGGAARVGHSSVLAPC 507          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4U0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.900e-18
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGA---------DEAGLRVGHTAVL 264
            W WS P + G AP PRTGH+A LL DG TI+++GGWDP +E   +      F  +YLLDT+ W W RGP+ L G          D    R GHTA L
Sbjct:  533 WKWSNPTIRGNAPFPRTGHTATLLEDGKTIMVYGGWDPNEED-ELTGEDNIFKGSYLLDTHDWTWKRGPDPLSGGSGSANHIVEDCGAKRCGHTAAL 628          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Host (cell factor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA21_FISSO)

HSP 1 Score: 87.0 bits (214), Expect = 5.010e-18
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    7 WSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVL 264
            WS  +  G  P PRTGH A +  D  TI I+GGWDP DE   V      F D++LL+T  WEWT+GP+  +G+D++G RVGH AVL
Sbjct:  405 WSNVQTKGTPPCPRTGHVAFVWHD-DTICIYGGWDPNDENDVV------FADSFLLNTETWEWTKGPK--IGSDDSGARVGHRAVL 481          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2M544_PHYPR)

HSP 1 Score: 82.8 bits (203), Expect = 1.610e-16
Identity = 46/90 (51.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLR--VGHTAVL 264
            W W  P VVGV P  RTGHSA LL DG  IL+ GGWDP+ +  +    V  F DA+LLDTN WEW        G+ +  LR  VGH AVL
Sbjct:  436 WSWFHPCVVGVPPQERTGHSATLLSDGK-ILVFGGWDPQRDDASAPTSV--FSDAFLLDTNTWEWQPAAYTDEGSADTALRGRVGHGAVL 522          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV08_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.060e-15
Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 WVWSTPEVVGV-APPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEW-TRGPEFLLGADEA---GLRVGHTAVLAR 270
            W W  P VVG   P  RTGH+A LL DG +I + GGWDP+DE          F DA++LDT  WEW   G E   G  +    G+ VGHTAV+AR
Sbjct:  524 WEWFHPMVVGCDRPAKRTGHAACLLQDGKSIWVQGGWDPQDE---TSEETTLFEDAFILDTETWEWRAAGAEVGAGEQQEEGPGVVVGHTAVVAR 615          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1K7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.990e-15
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLR--VGHTAVL 264
            W W  P VVGV P  RTGHS+ LL +G  ILI GGWDP+ +  +    V  F DA+LLDT  W+W         + E  LR  VGH+AVL
Sbjct:  442 WKWDEPTVVGVPPQARTGHSSTLLQNGK-ILIFGGWDPQRDDASSPTSV--FDDAFLLDTQSWQWEPATFAETSSTEGALRGRVGHSAVL 528          
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUM7_BRELC)

HSP 1 Score: 78.2 bits (191), Expect = 6.720e-15
Identity = 43/88 (48.86%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVKNFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVL 264
            W W  P V GV P  RTGHSA LL DG+ + + GGWDP+   G V      F DA++LDT  WEW   P F  G   +  RVGH AVL
Sbjct:  407 WTWVYPNVTGVPPQERTGHSATLLKDGN-LFVFGGWDPQR--GDVNAPTSVFDDAFILDTKTWEWQPVP-FNDGRITSRGRVGHGAVL 490          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10169.201.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.430e-5193.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.460e-5092.22protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Hypothetical8.080e-2247.87protein n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
Uncharacterized1.190e-1943.88protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Uncharacterized3.900e-1846.39protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
Host5.010e-1850.00cell factor n=2 Tax=Fistulifera solaris TaxID=1519... [more]
Uncharacterized1.610e-1651.11protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2M5... [more]
Uncharacterized1.060e-1547.37protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Uncharacterized4.990e-1547.78protein n=1 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized6.720e-1548.86protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10169contigEcto-sp9_F_contig10169:117..853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.1e-42
Seed eggNOG ortholog2880.D8LL74
KEGG koko:K20285
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928211.871337-CDS-Ecto-sp9_F_contig10169:116..2581622928211.871337-CDS-Ecto-sp9_F_contig10169:116..258Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10169 117..258 +
1692277796.9323905-CDS-Ecto-sp9_F_contig10169:116..2581692277796.9323905-CDS-Ecto-sp9_F_contig10169:116..258Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10169 117..258 +
1622928211.8824394-CDS-Ecto-sp9_F_contig10169:722..8531622928211.8824394-CDS-Ecto-sp9_F_contig10169:722..853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10169 723..853 +
1692277796.9428153-CDS-Ecto-sp9_F_contig10169:722..8531692277796.9428153-CDS-Ecto-sp9_F_contig10169:722..853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10169 723..853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10169.201.1prot_Ecto-sp9_F_contig10169.201.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10169 117..853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10169.201.1

>prot_Ecto-sp9_F_contig10169.201.1 ID=prot_Ecto-sp9_F_contig10169.201.1|Name=mRNA_Ecto-sp9_F_contig10169.201.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
WVWSTPEVVGVAPPPRTGHSAVLLPDGHTILIHGGWDPEDEGGAVCLRVK
NFGDAYLLDTNLWEWTRGPEFLLGADEAGLRVGHTAVLARC
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mRNA from alignment at Ecto-sp9_F_contig10169:117..853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10169.201.1 ID=mRNA_Ecto-sp9_F_contig10169.201.1|Name=mRNA_Ecto-sp9_F_contig10169.201.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=737bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10169:117..853+ (Ectocarpus species9 EcSCA_722f female)
TGGGTGTGGTCGACGCCGGAGGTGGTGGGAGTAGCGCCACCCCCCCGCAC CGGTCATTCCGCGGTGCTCCTGCCGGACGGGCACACGATCCTCATCCACG GGGGATGGGACCCGGAAGACGAAGGAGGTGCGGTGTGTCTCCGTAAAACA TTTTTTGCTGGCGGTATTTTGTTGATGTGGTTTGCTGTTGTTCTTGTTAG GAAATATAAATACACACACAGAAAGACTACCCGTTGGAGATATGGACTAC CCACAGTCGAACGGGATGTGGTGGAAGTCTTTTTGTTGTGGCTTTTGTTG GCAAAAGACACAGCGGCAGCCAGTAGAGGATTGTGTGTGCGTTTCGGTTG AGCATTTTGTCTCTCCTCCATACGCACGGATAAACAGCCCAGGTTAGGTT AGCATTGGATTCATCAATCCTACACTACCTGTGTTTCCACTACATAGTCA TTCATATTTTTTCTCTGCAATCATGTGATCACACAATTTATGTGTCGGTG TGTGTTATTTTTTTTCTTCAGTTTTGGAGACGGAATAATTTTGGGTATTG TATTTTGTTATTTTTCGCTCTGGGGACGCAACATTTTTTTTTTTTTTTAA TTCCAGGGGTGAAAAACTTCGGAGACGCCTACCTGCTGGACACGAACCTC TGGGAGTGGACCCGCGGCCCGGAATTCCTGCTAGGTGCCGACGAGGCCGG GCTGAGGGTGGGACACACGGCCGTCCTTGCCCGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10169:117..853+

>mRNA_Ecto-sp9_F_contig10169.201.1 ID=mRNA_Ecto-sp9_F_contig10169.201.1|Name=mRNA_Ecto-sp9_F_contig10169.201.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10169:117..853+ (Ectocarpus species9 EcSCA_722f female)
TGGGTGTGGTCGACGCCGGAGGTGGTGGGAGTAGCGCCACCCCCCCGCAC
CGGTCATTCCGCGGTGCTCCTGCCGGACGGGCACACGATCCTCATCCACG
GGGGATGGGACCCGGAAGACGAAGGAGGTGCGGTGTGTCTCCTGGGTGTG
GTCGACGCCGGAGGTGGTGGGAGTAGCGCCACCCCCCCGCACCGGTCATT
CCGCGGTGCTCCTGCCGGACGGGCACACGATCCTCATCCACGGGGGATGG
GACCCGGAAGACGAAGGAGGTGCGGTGTGTCTCCGGGTGAAAAACTTCGG
AGACGCCTACCTGCTGGACACGAACCTCTGGGAGTGGACCCGCGGCCCGG
AATTCCTGCTAGGTGCCGACGAGGCCGGGCTGAGGGTGGGACACACGGCC
GTCCTTGCCCGCTGCGGGTGAAAAACTTCGGAGACGCCTACCTGCTGGAC
ACGAACCTCTGGGAGTGGACCCGCGGCCCGGAATTCCTGCTAGGTGCCGA
CGAGGCCGGGCTGAGGGTGGGACACACGGCCGTCCTTGCCCGCTGC
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