mRNA_Ecto-sp9_F_contig10154.190.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10154.190.1
Unique NamemRNA_Ecto-sp9_F_contig10154.190.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10154.190.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 9.910e-25
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 2 
Query:  293 RRGGQRRAGRGGRSAILLSLNLDNEDETWTRLMAVHRWILSRV*TALGGGVVVVAAC*WGHVFGDLHVEATSSGSTDV 526
            RR G+RR GRGGRSAILLSLNLDNEDETWTRLMAVHRW+LSR     G  V++      GH FGDLHVEATSSGSTDV
Sbjct:  250 RRSGERRVGRGGRSAILLSLNLDNEDETWTRLMAVHRWLLSR-----GENVLLNQGPSRGHAFGDLHVEATSSGSTDV 322
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BLAST of mRNA_Ecto-sp9_F_contig10154.190.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.170e-23
Identity = 68/146 (46.58%), Postives = 88/146 (60.27%), Query Frame = 2 
Query:   98 DGNVPVRVHISVLGWIPLPVASLSPLWSIPASLVV---LLSLLIIVRGTSQRATARAXXXXAAGTVTIRRGGQRRAGRGGRSAILLSLNLDNEDETWTRLMAVHRWILSRV*TALGGGVVVVAAC*WGHVFGDLHVEATSSGSTDV 526
            D  + V    S LGW+ L VA+L PLW+IPASL V   +  +L+ +R    RA AR      AG+  IR  G+RRAGR  R+ + +SLNLD++ ETW RLMAV+R++LS      GG V        G+V GDL V+  SSGSTDV
Sbjct:  405 DKCIHVTARTSGLGWMWLAVAALRPLWNIPASLSVVSGMFLMLLHLRSVRPRAAARVAEGRIAGSALIRGAGERRAGRASRAMLFVSLNLDSDGETWARLMAVYRFVLST-----GGTVPRGDGPGEGYVLGDLEVDIRSSGSTDV 545
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10154.190.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.910e-2574.36protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.170e-2346.58protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10154contigEcto-sp9_F_contig10154:1331..3081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_000270.1
Exons4
Model size555
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10154.190.1prot_Ecto-sp9_F_contig10154.190.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10154 1331..3081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.8381355-CDS-Ecto-sp9_F_contig10154:1330..16261622928210.8381355-CDS-Ecto-sp9_F_contig10154:1330..1626Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 1331..1626 +
1692277796.3200064-CDS-Ecto-sp9_F_contig10154:1330..16261692277796.3200064-CDS-Ecto-sp9_F_contig10154:1330..1626Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 1331..1626 +
1622928210.8523674-CDS-Ecto-sp9_F_contig10154:2364..24871622928210.8523674-CDS-Ecto-sp9_F_contig10154:2364..2487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 2365..2487 +
1692277796.327608-CDS-Ecto-sp9_F_contig10154:2364..24871692277796.327608-CDS-Ecto-sp9_F_contig10154:2364..2487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 2365..2487 +
1622928210.86364-CDS-Ecto-sp9_F_contig10154:2556..26051622928210.86364-CDS-Ecto-sp9_F_contig10154:2556..2605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 2557..2605 +
1692277796.3370976-CDS-Ecto-sp9_F_contig10154:2556..26051692277796.3370976-CDS-Ecto-sp9_F_contig10154:2556..2605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 2557..2605 +
1622928210.874045-CDS-Ecto-sp9_F_contig10154:2994..30811622928210.874045-CDS-Ecto-sp9_F_contig10154:2994..3081Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 2995..3081 +
1692277796.3445868-CDS-Ecto-sp9_F_contig10154:2994..30811692277796.3445868-CDS-Ecto-sp9_F_contig10154:2994..3081Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10154 2995..3081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10154.190.1

>prot_Ecto-sp9_F_contig10154.190.1 ID=prot_Ecto-sp9_F_contig10154.190.1|Name=mRNA_Ecto-sp9_F_contig10154.190.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=185bp
MCPPVLVTPREYTHRVVFLPSVVVSTYFSVSAGWQRPREGAHQCSRLDTA
AGCLLVAVVEHSSVAGRAIELAHHSPRNQPEGNSSCRSSSSCRNGYDQER
WTKESGPWGAFGNTAVAKPRQRGRDMDKVDGGPSVDTLPSMNRSWWWSCC
CCRLLMGTCLRGPPRGGHELRIDRCEYRTESPGC*
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mRNA from alignment at Ecto-sp9_F_contig10154:1331..3081+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10154.190.1 ID=mRNA_Ecto-sp9_F_contig10154.190.1|Name=mRNA_Ecto-sp9_F_contig10154.190.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1751bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10154:1331..3081+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCCCCCCTGTTCTTGTCACACCTCGTGAATACACTCATCGTGTTGT
TTTTCTGCCGTCCGTTGTTGTTTCAACCTATTTTTCTGTCTCAGCGGGAT
GGCAACGTCCCCGTGAGGGTGCACATCAGTGTTCTCGGCTGGATACCGCT
GCCGGTTGCCTCCTTGTCGCCGTTGTGGAGCATTCCAGCGTCGCTGGTCG
TGCTATTGAGCTTGCTCATCATAGTCCGCGGAACCAGCCAGAGGGCAACA
GCTCGTGCCGCAGCAGCTCGAGCTGCAGGAACGGTTACGATCAGGAGTAA
GTACTGCTTCGGTGGTTGTCAATACCCCGTGGTTAACCTCTAATGGTTTG
ACAGCTGTTCCGAAGGACGGTACGAAAAGGCGTCAGACGTCCATTGGGAT
TGGTGTTGAACAGTCAAGGCAAAACATTTCTCTCACGTAACGATACTAAT
ATAGTAGCAGGACGGTTCATCCTTCATGCCGAATCCACTGCAGTACCTGT
GGAGACTGTTGGCGGCCTGGGCACACCAAGCTACAACGTATTTTTCGAAC
ACCGCCCCCGCCACCACAAGCAAATAGTCAAGAACAACAGCAACAACAGC
CGCAGCAGAGTCAAACCTAGCGCCCCCCAACACAAGCAACGGCCGCGGCA
CAGAACACACCGACAACAACACCAATAGCCCCAACACTCAGAAATGCCTT
GCGGAATAGCCTGTACAACACGTGGGACAATTCTCCTCCTGACTGATCGC
TCCCACTCTGGAGAGGAATGGCAGTACCGGTACTACTGTAGTTCCATGCG
TTAGTCCCTACCAGATGAAAATATCTTCGATTCTCTCACGTTTCCCTACG
AATCGGGGATGAAACATCAAAGACCTAGTCTACAGCAGCAGTGACGCCAC
CAAACCGCACCCTTGTAACGATGACGACAGCGACGACAAGGTCCGATTCG
TAGCTGTTCTGCCCCTTCATGTTGCAGAAAGTGATATCCTCCACACCGTA
CACTGAAACTGGCACACTCTCTCTTGCTTTGTAGGAGGTGGACAAAGGAG
AGCGGGCCGTGGGGGGCGTTCGGCAATACTGCTGTCGCTAAACCTCGACA
ACGAGGACGAGACATGGACAAGGTTGATGGCGGTCCATCGGTGGATACTC
TCCCGAGGTGAGATGAACGGCATTGTGGGGTTGTTGTTGTCGTCGCTGTT
GCCGTCCTGTAGTGGTGGTGTGGTAGTATGAACCGCTCTTGGTGGTGGAG
TTGTTGTTGTTGCCGCTTGTTGATGGTCGTCGTGGTGGGCGCGACGGGGA
GATAGAATTGTTGCTATCGCTATCGTTATTGGTGTTGGCTTGTGTTGGCA
AGATGCCGGAATCCTTCGGCATATTCTGCTCGTTCTGACCGTTCTACAAG
CATATGCGATCATTACCGACAGCTGTTTATCGGCAACGCCGGGCGGTCGA
TATCCTTGCGGGAGGCTCTGCCATGTTCGTTCGGGGAAGGCTGCGATGGC
TTTTTGGGTAGGACATGCCAATCGGGAAATATCGCTGTCCTTACACAATC
GAATGCTGTGTGGCGGCTAGACGGGGCTGCCATTGTCATTCACCCTCTAA
ACCGTACAACTCGTTTGTTGTTGCTCTCAGGTAGAACCGTTCCCCACAGT
CAAGGACCGGGTAGGGGACATGTCTTCGGGGACCTCCACGTGGAGGCCAC
GAGCTCCGGATCGACAGATGTGAGTATCGGACGGAATCGCCTGGGTGCTA
A
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10154:1331..3081+

>mRNA_Ecto-sp9_F_contig10154.190.1 ID=mRNA_Ecto-sp9_F_contig10154.190.1|Name=mRNA_Ecto-sp9_F_contig10154.190.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1110bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10154:1331..3081+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCCCCCCTGTTCTTGTCACACCTCGTGAATACACTCATCGTGTTGT
TTTTCTGCCGTCCGTTGTTGTTTCAACCTATTTTTCTGTCTCAGCGGGAT
GGCAACGTCCCCGTGAGGGTGCACATCAGTGTTCTCGGCTGGATACCGCT
GCCGGTTGCCTCCTTGTCGCCGTTGTGGAGCATTCCAGCGTCGCTGGTCG
TGCTATTGAGCTTGCTCATCATAGTCCGCGGAACCAGCCAGAGGGCAACA
GCTCGTGCCGCAGCAGCTCGAGCTGCAGGAACGGTTACGATCAGGAATGT
GCCCCCCTGTTCTTGTCACACCTCGTGAATACACTCATCGTGTTGTTTTT
CTGCCGTCCGTTGTTGTTTCAACCTATTTTTCTGTCTCAGCGGGATGGCA
ACGTCCCCGTGAGGGTGCACATCAGTGTTCTCGGCTGGATACCGCTGCCG
GTTGCCTCCTTGTCGCCGTTGTGGAGCATTCCAGCGTCGCTGGTCGTGCT
ATTGAGCTTGCTCATCATAGTCCGCGGAACCAGCCAGAGGGCAACAGCTC
GTGCCGCAGCAGCTCGAGCTGCAGGAACGGTTACGATCAGGAGAGGTGGA
CAAAGGAGAGCGGGCCGTGGGGGGCGTTCGGCAATACTGCTGTCGCTAAA
CCTCGACAACGAGGACGAGACATGGACAAGGTTGATGGCGGTCCATCGGT
GGATACTCTCCCGAGGAGGTGGACAAAGGAGAGCGGGCCGTGGGGGGCGT
TCGGCAATACTGCTGTCGCTAAACCTCGACAACGAGGACGAGACATGGAC
AAGGTTGATGGCGGTCCATCGGTGGATACTCTCCCGAGTATGAACCGCTC
TTGGTGGTGGAGTTGTTGTTGTTGCCGCTTGTTGATGTATGAACCGCTCT
TGGTGGTGGAGTTGTTGTTGTTGCCGCTTGTTGATGGGGACATGTCTTCG
GGGACCTCCACGTGGAGGCCACGAGCTCCGGATCGACAGATGTGAGTATC
GGACGGAATCGCCTGGGTGCTAAGGGACATGTCTTCGGGGACCTCCACGT
GGAGGCCACGAGCTCCGGATCGACAGATGTGAGTATCGGACGGAATCGCC
TGGGTGCTAA
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