mRNA_Ecto-sp9_F_contig10140.180.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW44_9PHAE) HSP 1 Score: 173 bits (439), Expect = 9.670e-50 Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1
Query: 1 IRERMAGAMNGTSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGCDQ 255
IRERMA AMNGTSPLKFVLLSGHDTTFIPFMAAVAP AWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQV+RLEGCDQ
Sbjct: 337 IRERMAAAMNGTSPLKFVLLSGHDTTFIPFMAAVAPLAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVLRLEGCDQ 421
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTC4_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 8.130e-16 Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 34 TSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGS-ESGEFYFRFVYNGQVMRLEGCDQ 255
T+PLKF L S HDT+ +PF+AAV WDG W YA L S+EL +G +YFR +YNGQ M + GC Q
Sbjct: 350 TTPLKFALFSAHDTSLMPFLAAVLGDVWDGRWAGYAYLVSMELYSASAASPLGAGGYYFRLIYNGQAMLVPGCTQ 424
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXG6_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 5.060e-14 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 46 KFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESG-EFYFRFVYNGQVMRLEGC 249
KF L SGHD+T +P +AA+AP WDG W YA+L EL ++S +YFR VYNG+ ++LEGC
Sbjct: 85 KFALYSGHDSTVMPLLAALAPEEWDGAWAPYASLLVFELYSDPAIFTDSPYRYYFRLVYNGKALQLEGC 153
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBP7_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 5.200e-12 Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 40 PLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFY-----FRFVYNGQVM--RLEGC 249
P K L +GHDTT +P +A++ P WDG WP YA++ S+E+ ++ + Y FR +YNG+++ R++GC
Sbjct: 157 PAKLALYAGHDTTIMPILASLGPGVWDGEWPPYASMVSLEIHQVHIDSNTDKTLYRSNYAFRLIYNGEILTNRIDGC 233
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Allantoicase (domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRL4_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 5.910e-8 Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 34 TSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
T+P KF L GHD+T +PFMAAV WDG W YA + ++E+ ++ +S F R ++ G + + C
Sbjct: 340 TAP-KFALTMGHDSTIMPFMAAVVKDNWDGKWTPYAGMLTMEVYKL-----KSASFAVRMLFQGTPVHIPDC 405
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBI8_GLOUD) HSP 1 Score: 58.2 bits (139), Expect = 5.920e-8 Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 46 KFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGCD 252
+ + GHD+T +PFMAA+ WDG W YA + S+EL ++ ++G F R ++ GQ + + C+
Sbjct: 351 RLAITMGHDSTIMPFMAAIVKENWDGKWTPYAGVLSMELYKL-----KTGSFAARMIFQGQPVLIPECN 414
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F1A2_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 6.070e-8 Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 10 RMAGAMNGTSPL-KFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
R+ A+NG + K + HD+T +PF+AAVA WD TW YA + +IEL + +++G + R V++GQ + L C
Sbjct: 334 RIDEALNGGPDVYKLSVTMAHDSTLMPFIAAVAKENWDRTWTPYAGMLAIELYK-----TKAGSYAVRMVFHGQPLLLPDC 409
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Component (of the counting factor complex n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NZU5_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 8.070e-8 Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 28 NGTSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGCDQ 255
NGTS +K++L SGHD+T P + + + +DG WP + + EL S GE + + YNG+ M+L C++
Sbjct: 389 NGTSEVKYLLYSGHDSTVAPLLGLL--NIYDGLWPPFRAYVNFELY------SRDGEHFVQVKYNGKEMKLPACEK 456
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WL23_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 1.630e-5 Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 52 VLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
++ + HD+T +PF+AAVA WD TW YA + E+ + ++ G + R +++GQ + L C
Sbjct: 311 LVTTAHDSTLMPFLAAVARENWDRTWTPYAGMLVTEIYK-----TKKGSYAARMIFHGQPLLLPDC 371
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: FAD-binding (FR-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZP6_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 1.700e-5 Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 52 VLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
++ + HD+T +PF+AAVA WD TW YA + E+ + ++ G + R +++GQ + L C
Sbjct: 380 LVTTAHDSTLMPFLAAVARENWDRTWTPYAGMLVTEIYK-----TKKGSYAARMIFHGQPLLLPDC 440 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10140.180.1 >prot_Ecto-sp9_F_contig10140.180.1 ID=prot_Ecto-sp9_F_contig10140.180.1|Name=mRNA_Ecto-sp9_F_contig10140.180.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=81bp MAGAMNGTSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELback to top mRNA from alignment at Ecto-sp9_F_contig10140:4137..4391+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10140.180.1 ID=mRNA_Ecto-sp9_F_contig10140.180.1|Name=mRNA_Ecto-sp9_F_contig10140.180.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10140:4137..4391+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10140:4137..4391+ >mRNA_Ecto-sp9_F_contig10140.180.1 ID=mRNA_Ecto-sp9_F_contig10140.180.1|Name=mRNA_Ecto-sp9_F_contig10140.180.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10140:4137..4391+ (Ectocarpus species9 EcSCA_722f female)back to top |