mRNA_Ecto-sp9_F_contig10140.180.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10140.180.1
Unique NamemRNA_Ecto-sp9_F_contig10140.180.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW44_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 9.670e-50
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1
Query:    1 IRERMAGAMNGTSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGCDQ 255
            IRERMA AMNGTSPLKFVLLSGHDTTFIPFMAAVAP AWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQV+RLEGCDQ
Sbjct:  337 IRERMAAAMNGTSPLKFVLLSGHDTTFIPFMAAVAPLAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVLRLEGCDQ 421          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTC4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.130e-16
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   34 TSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGS-ESGEFYFRFVYNGQVMRLEGCDQ 255
            T+PLKF L S HDT+ +PF+AAV    WDG W  YA L S+EL          +G +YFR +YNGQ M + GC Q
Sbjct:  350 TTPLKFALFSAHDTSLMPFLAAVLGDVWDGRWAGYAYLVSMELYSASAASPLGAGGYYFRLIYNGQAMLVPGCTQ 424          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXG6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.060e-14
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   46 KFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESG-EFYFRFVYNGQVMRLEGC 249
            KF L SGHD+T +P +AA+AP  WDG W  YA+L   EL       ++S   +YFR VYNG+ ++LEGC
Sbjct:   85 KFALYSGHDSTVMPLLAALAPEEWDGAWAPYASLLVFELYSDPAIFTDSPYRYYFRLVYNGKALQLEGC 153          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBP7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.200e-12
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   40 PLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFY-----FRFVYNGQVM--RLEGC 249
            P K  L +GHDTT +P +A++ P  WDG WP YA++ S+E+ ++    +     Y     FR +YNG+++  R++GC
Sbjct:  157 PAKLALYAGHDTTIMPILASLGPGVWDGEWPPYASMVSLEIHQVHIDSNTDKTLYRSNYAFRLIYNGEILTNRIDGC 233          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Allantoicase (domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRL4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.910e-8
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   34 TSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
            T+P KF L  GHD+T +PFMAAV    WDG W  YA + ++E+ ++     +S  F  R ++ G  + +  C
Sbjct:  340 TAP-KFALTMGHDSTIMPFMAAVVKDNWDGKWTPYAGMLTMEVYKL-----KSASFAVRMLFQGTPVHIPDC 405          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBI8_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 5.920e-8
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   46 KFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGCD 252
            +  +  GHD+T +PFMAA+    WDG W  YA + S+EL ++     ++G F  R ++ GQ + +  C+
Sbjct:  351 RLAITMGHDSTIMPFMAAIVKENWDGKWTPYAGVLSMELYKL-----KTGSFAARMIFQGQPVLIPECN 414          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F1A2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.070e-8
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   10 RMAGAMNGTSPL-KFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
            R+  A+NG   + K  +   HD+T +PF+AAVA   WD TW  YA + +IEL +     +++G +  R V++GQ + L  C
Sbjct:  334 RIDEALNGGPDVYKLSVTMAHDSTLMPFIAAVAKENWDRTWTPYAGMLAIELYK-----TKAGSYAVRMVFHGQPLLLPDC 409          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Component (of the counting factor complex n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NZU5_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 8.070e-8
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   28 NGTSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGCDQ 255
            NGTS +K++L SGHD+T  P +  +  + +DG WP +    + EL       S  GE + +  YNG+ M+L  C++
Sbjct:  389 NGTSEVKYLLYSGHDSTVAPLLGLL--NIYDGLWPPFRAYVNFELY------SRDGEHFVQVKYNGKEMKLPACEK 456          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WL23_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.630e-5
Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 1
Query:   52 VLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
            ++ + HD+T +PF+AAVA   WD TW  YA +   E+ +     ++ G +  R +++GQ + L  C
Sbjct:  311 LVTTAHDSTLMPFLAAVARENWDRTWTPYAGMLVTEIYK-----TKKGSYAARMIFHGQPLLLPDC 371          
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Match: FAD-binding (FR-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZP6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.700e-5
Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 1
Query:   52 VLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIELLRIGGGGSESGEFYFRFVYNGQVMRLEGC 249
            ++ + HD+T +PF+AAVA   WD TW  YA +   E+ +     ++ G +  R +++GQ + L  C
Sbjct:  380 LVTTAHDSTLMPFLAAVARENWDRTWTPYAGMLVTEIYK-----TKKGSYAARMIFHGQPLLLPDC 440          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10140.180.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Uncharacterized9.670e-5096.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical8.130e-1649.33protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Hypothetical5.060e-1449.28protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Hypothetical5.200e-1237.66protein (Fragment) n=1 Tax=Amphora coffeiformis Ta... [more]
Allantoicase5.910e-837.50domain-containing protein (Fragment) n=1 Tax=Pythi... [more]
Uncharacterized5.920e-834.78protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized6.070e-837.04protein n=3 Tax=Phytophthora kernoviae TaxID=32545... [more]
Component8.070e-835.53of the counting factor complex n=1 Tax=Planoprotos... [more]
Uncharacterized1.630e-533.33protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
FAD-binding1.700e-533.33FR-type domain-containing protein n=1 Tax=Nothophy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10140contigEcto-sp9_F_contig10140:4137..4391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog2850.Phatr42763
EggNOG free text desc.Histidine phosphatase superfamily (branch 2)
EggNOG OGs2CV57@1,2RRBF@2759,2XBQ3@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928209.1400564-UTR-Ecto-sp9_F_contig10140:4136..41481622928209.1400564-UTR-Ecto-sp9_F_contig10140:4136..4148Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10140 4137..4148 +
1692277795.6407464-UTR-Ecto-sp9_F_contig10140:4136..41481692277795.6407464-UTR-Ecto-sp9_F_contig10140:4136..4148Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10140 4137..4148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928209.15559-CDS-Ecto-sp9_F_contig10140:4148..43911622928209.15559-CDS-Ecto-sp9_F_contig10140:4148..4391Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10140 4149..4391 +
1692277795.6513493-CDS-Ecto-sp9_F_contig10140:4148..43911692277795.6513493-CDS-Ecto-sp9_F_contig10140:4148..4391Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10140 4149..4391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10140.180.1prot_Ecto-sp9_F_contig10140.180.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10140 4149..4391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10140.180.1

>prot_Ecto-sp9_F_contig10140.180.1 ID=prot_Ecto-sp9_F_contig10140.180.1|Name=mRNA_Ecto-sp9_F_contig10140.180.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=81bp
MAGAMNGTSPLKFVLLSGHDTTFIPFMAAVAPSAWDGTWPRYATLASIEL
LRIGGGGSESGEFYFRFVYNGQVMRLEGCDQ
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mRNA from alignment at Ecto-sp9_F_contig10140:4137..4391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10140.180.1 ID=mRNA_Ecto-sp9_F_contig10140.180.1|Name=mRNA_Ecto-sp9_F_contig10140.180.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10140:4137..4391+ (Ectocarpus species9 EcSCA_722f female)
ATCCGGGAGCGAATGGCCGGGGCCATGAACGGCACATCTCCGCTCAAGTT CGTCCTCCTTTCGGGCCACGACACGACCTTCATCCCCTTCATGGCTGCCG TGGCACCGTCGGCGTGGGACGGAACCTGGCCTCGCTACGCCACCCTCGCC TCGATCGAGCTGCTGCGCATAGGTGGTGGCGGTAGCGAGAGCGGAGAGTT CTACTTCCGGTTTGTGTACAACGGGCAGGTCATGAGGCTGGAGGGGTGCG ACCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10140:4137..4391+

>mRNA_Ecto-sp9_F_contig10140.180.1 ID=mRNA_Ecto-sp9_F_contig10140.180.1|Name=mRNA_Ecto-sp9_F_contig10140.180.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10140:4137..4391+ (Ectocarpus species9 EcSCA_722f female)
ATGGCCGGGGCCATGAACGGCACATCTCCGCTCAAGTTCGTCCTCCTTTC
GGGCCACGACACGACCTTCATCCCCTTCATGGCTGCCGTGGCACCGTCGG
CGTGGGACGGAACCTGGCCTCGCTACGCCACCCTCGCCTCGATCGAGCTG
CTGCGCATAGGTGGTGGCGGTAGCGAGAGCGGAGAGTTCTACTTCCGGTT
TGTGTACAACGGGCAGGTCATGAGGCTGGAGGGGTGCGACCAGATGGCCG
GGGCCATGAACGGCACATCTCCGCTCAAGTTCGTCCTCCTTTCGGGCCAC
GACACGACCTTCATCCCCTTCATGGCTGCCGTGGCACCGTCGGCGTGGGA
CGGAACCTGGCCTCGCTACGCCACCCTCGCCTCGATCGAGCTGCTGCGCA
TAGGTGGTGGCGGTAGCGAGAGCGGAGAGTTCTACTTCCGGTTTGTGTAC
AACGGGCAGGTCATGAGGCTGGAGGGGTGCGACCAG
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