mRNA_Ecto-sp9_F_contig10136.173.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10136.173.1
Unique NamemRNA_Ecto-sp9_F_contig10136.173.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: zinc (finger BED domain-containing protein 1 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=UPI00168D7D3B)

HSP 1 Score: 102 bits (255), Expect = 5.100e-21
Identity = 94/317 (29.65%), Postives = 152/317 (47.95%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQ--LCDTL--------SSEGKLNITYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMM-PMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRF--YPPTDCAMIAAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVASPPRSDLRKKKLVDKSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  K+ T  ATRWNS YE     +V ++  QQ  +C  L         S G +  T TE D +    + + L+   EAT IM  DS  T S+  P+LA  LH    + A D + P  ++++   + E++  R+      +  +I++  DPR K L +    E++  H   V    A   ++   G + + A   D      P +  R   LV      F+ +   P+    + +     EL++YL+A  L+   +    L WW +H   +P+L ++A  YL +P +S ++ERVFSTAG+IVT +R+ L  + V+ LV
Sbjct:  138 PAHKLKTDVATRWNSAYE-----MVERFLEQQPAICAALLSPQVRKGGSSGDI-CTLTENDISTAEEMAKALKPLKEATNIMSEDSSPTLSVTAPLLAQLLHDTKASSAED-DAPL-VQEIKVAIHEDLSKRYTSVQMKNSLLISSTLDPRFKALPFLSREEQQLIHGKVVTEAAALEKDV---GPAAVGAENPDTTEEESPPAPKRASALVSLLGKTFTEVNVVPKTTSTKAEE----ELKKYLEAPPLSLAENP---LQWWSSHEAAFPLLGKLAKRYLCIPGTSVAAERVFSTAGDIVTAQRSNLSPDHVDQLV 436          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: BED-type (domain-containing protein n=8 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3P8QD55_ASTCA)

HSP 1 Score: 101 bits (252), Expect = 2.430e-20
Identity = 95/315 (30.16%), Postives = 152/315 (48.25%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYK--YYVQQLCDTLSSEGKLNITYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMM-PMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAMI--AAVCDPRTKKLQWCESREKKE-YHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVASP--PRSDLRKKKLVDKSSLLFST---LLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  K+ T   TRWNS Y+  +  L  +   +   L   +        T  E D  NT  +V  L+    AT +M  +   T S++ P+LA  LH        D  L   +R++   + ++++ R+    +   +  A+  DPR K L +    E++E Y ++   A+   +S+ S   +      P DEP  +P  P    + +K    + LL  T   + A P+++ A  +     E++RY +  +LA T      L WW +H +VYP L  +A  YL +P +S S+ERVFSTAG+IVT KR+ L SE V+ L+
Sbjct:  316 PTHKLKTDVCTRWNSAYDMLQRFLEQQPAIFAALLSPEVRKSSTDIFTLNETDIGNTEEIVRALKSMQVATTVMSEEKNPTLSLVAPLLAQLLHD-TQDNIGDTAL---VRNIKQSISQDLKKRYASTVERNTLYTASALDPRFKTLPFLSLEERQETYARVVAEAITLQVSKHSGPEAHEHHEKP-DEPEQNPRPPLIPAKMRKSCGLTDLLGQTYGDVRAPPKSLSATAEE----EVKRYQEVTSLALTEDP---LSWWKSHEEVYPFLATLAKRYLCIPGTSVSAERVFSTAGDIVTAKRSTLTSEHVDQLL 618          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI0010A08E72)

HSP 1 Score: 98.6 bits (244), Expect = 1.890e-19
Identity = 93/311 (29.90%), Postives = 150/311 (48.23%), Query Frame = 1
Query:   10 KIPTHCATRWNSNYEQARVILVYKYYVQQ--LCDTLSSE-----GKLNITYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMM-PMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAM--IAAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVASPPRSDLRKKKLVDKSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            K+ T  ATRWNS ++     ++ ++  QQ  +C  L S      G    T  E D  N   V   L+   EAT IM  ++  T S++ P+ A  LH    TKA        +R++   + E++  R+   TD  M  I++  DPR K L +    E+K+ H   +A      +E     +  L     DE    PP    RK  L++     F+ +   P++     +     E+++YL+  +L+    S+  L WW +   V+P+L ++A  YL +P +S ++ERVFSTAG+IVT +R+ L  E V+ L+
Sbjct:  188 KLTTDVATRWNSAFD-----MIDRFLEQQPAICAALLSAEVRKCGAGICTLDETDVANAEEVAAALKPLKEATNIMSEEATPTVSVIAPLHAQLLHK---TKAGFCGETALVREIKQAIHEDLAKRYTSVTDKNMLHISSSLDPRFKTLPFLSQDEQKDIHSKVIAEAATLENEELDIPNVVL----DDE---GPPVPKKRKTSLLNLLGKTFTNVSDVPKSAGTRAEE----EMKKYLETPSLSL---SEDPLTWWRSQETVFPLLAKLAKCYLCIPGTSVAAERVFSTAGDIVTAQRSMLTPEHVDQLL 476          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=4 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI000E408DFC)

HSP 1 Score: 97.1 bits (240), Expect = 3.270e-19
Identity = 99/329 (30.09%), Postives = 153/329 (46.50%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQLCDTLSS----EGKLNI-TYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMM-PMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAMI--AAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVAS--------------PPRSDLRKKKLVDKSSLLFST---LLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  K+ T   TRWNS Y+  +  L  +     +C  L S    +   +I T  E D  NT  +V  L+    AT +M  +   T S++ P+LA  LH        D  L   +R++   + ++++ R+    +   +  A+  DPR K L +    E++E +   VA  + T+ E  R         P  EP A               PP    + +K    + LL  T   + A P+++ A  +     E++RY +  +LA T      L WW +H +VYP L  +A  YL +P +S S+ERVFSTAG+IVT KR+ L SE V+ L+
Sbjct:   68 PTHKLKTDVCTRWNSAYDMLQHFLEQQ---PAICAALLSPEVRKSSTDIFTLNETDIGNTEEIVRALKSMQVATTVMSEEKNPTLSLVAPLLAQLLHD-TQDNIGDTAL---VRNIKQSISQDLKKRYASTVERNTLYTASALDPRFKTLPFLSLEERQETYARVVAEAI-TLQEEKRQQ-------PICEPEAHEHHEKPDETEQNLRPPLIPAKMRKSCGLTDLLGQTYGDVGAPPKSLSATAEE----EVKRYQEVTSLALTEYP---LSWWKSHEEVYPFLATLAKRYLCIPGTSVSAERVFSTAGDIVTAKRSTLTSEHVDQLL 374          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=1 Tax=Perca flavescens TaxID=8167 RepID=UPI00106E8685)

HSP 1 Score: 95.9 bits (237), Expect = 3.900e-19
Identity = 94/318 (29.56%), Postives = 151/318 (47.48%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQ--LCDTLSS----EGKLNI-TYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMMPMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAMI--AAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMS-RTGSSTLAAAPSDEP---VASPPRSDLRKK-KLVDKSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  K  T  +TRWNS YE     ++ ++  QQ  +C  L S    +   ++ T  E+D  N   +   L+    AT +M  +   T S++P L + L       + D  L   IRDV   + ++++ R+    +   +  A+  DPR K L +    E+++     VA  V    E+  +T S        DEP      P  + +RK   L D     +  + A  +++ A  +     E++RY +   L+ T      L WW +H +VYP L ++A  YL +P +S S+ERVFSTAG+IVT +R+ L SE V+ L+
Sbjct:    6 PTHKPKTDVSTRWNSAYE-----MLLRFLEQQPAVCAALLSPEVRKSSTDVFTLNESDIGNAEEIARALKSMQVATTVMSEEKNPTRSLVPPLLAQLLRNTQDNSGDTAL---IRDVKQSICQDLKKRYASAAEKNTLYTASSLDPRFKTLPFLSPEERQDTFARVVAEAVTLQEEIRLQTISEPEVQEHQDEPGYTEEEPGPAKMRKSCGLTDLLGQTYGDVGAPTKSLTAIAEE----EVKRYQEVTPLSLTEEP---LSWWKSHERVYPFLAKLAKRYLCIPGTSVSAERVFSTAGDIVTAQRSTLSSEHVDQLL 308          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: BED-type (domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UWF3_AMPQE)

HSP 1 Score: 97.1 bits (240), Expect = 8.820e-19
Identity = 89/309 (28.80%), Postives = 152/309 (49.19%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQLCDTLSSEGKLNITYTEADWTNTNAVVELLRLFCEATEIMQGDSVIT-NSMMPMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAMI---AAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMSRTGSSTLAAAPSD-EPVASPPRSDLRKKKLVDKSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P + +    +TRWNS+Y     ++  +   Q LC  L    K ++  ++ + +     V++++     TE M  +  +T +++ P+L   L+   V  ASD +L   ++    EM  ++  R+  P D  ++   AA  DPR K L +    E KE            +++   + +  L   PS+ EP A   + + +  +++D   ++ S  +   + ++   ++A A E+ RY  +E + + N     L WW  +   YP+L ++A  YL +PA+S  SERVFSTAGNIVTKKR  L  E VN LV
Sbjct:  337 PTQNLIQDVSTRWNSSYYMICRVIDQQ---QPLCAALLELKKSDLMPSDTELSTMETYVDIMKPLVAITEAMGAEEWVTISTLRPILHKLLNSHLVGTASDTQLRLKMK---SEMLADLRTRY--PDDLLLLLSKAAFLDPRLKALPFLTLSELKE------------VTQSIESDAMLLTEVPSELEPAAKKKKGEHKLFEIID--DIMNSDKVDDQQPVITNLQKAHA-EISRY-SSEPITSDNP----LAWWSTNSFRYPILSQLARKYLCIPATSVPSERVFSTAGNIVTKKRACLDPETVNMLV 617          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Perca fluviatilis TaxID=8168 RepID=A0A6A5E100_PERFL)

HSP 1 Score: 96.7 bits (239), Expect = 1.080e-18
Identity = 98/319 (30.72%), Postives = 154/319 (48.28%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQ--LCDTLSS----EGKLNI-TYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMM-PMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAMI--AAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEM-SRTGSSTLAAAPSDEP---VASPPRSDLRKK-KLVDKSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  K+ T  +TRWNS YE     +  ++  QQ  +C  L S    +   ++ T  E+D  N   +V  L+L   AT +M  +   T S++ P+LA  LH        D  L   IRDV   + ++++ R+    +   +  A+  DPR K L +    E++E     VA  V    E+  +T S        +EP      P  + +RK   L D     +  + A  +++ A  +     E++RY +   L+ T      L WW +H +VYP L ++A  YL +P +S S+ERVFSTAG+IVT +R+ L SE V+ L+
Sbjct:  241 PTHKLKTDVSTRWNSAYE-----MQLRFLEQQPAVCAALLSPEVRKSSTDVFTLNESDIGNAEEIVRALKLMQVATTVMSEEKNPTLSLVAPLLAQLLHD-TQDNIGDTAL---IRDVKQSISQDLKKRYASAAEKNTLYTASSLDPRFKTLPFLSQEERQETFARVVAEAVTLQEEIRQQTISEPEVQEHHEEPGYTEEEPGPAKMRKSCGLTDLLGQTYGDVGAPTKSLTAIAEE----EVKRYQEVTPLSLTEEP---LSWWKSHERVYPFLAKLAKRYLCIPGTSVSAERVFSTAGDIVTAQRSTLSSEHVDQLL 543          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: BED-type (domain-containing protein n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2CX90_CYPVA)

HSP 1 Score: 96.3 bits (238), Expect = 1.520e-18
Identity = 92/308 (29.87%), Postives = 143/308 (46.43%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQ-LCDTLSSEGKLNI-TYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMMPMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAMIAAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVASPPRSDLRKKKLVDKSSLLFSTLLASPEAILAER--KRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  K+     TRWNS++E     L  +  V   L D    +G   I T TE D +    VV LL     AT +M  +   T S++  L + L         D  L   I+D+   M E++ +R+       + AA  DPR KKLQ+     + +  +  +A   A + E               + V +PP S  +K K++D    LF    ++ +    ++  K  A  E+ +Y     +A+ +    VL WW AH+  +P+L ++A  YL +P +S  SERVFSTAG+IV  +R+ L SE V+ L+
Sbjct:  283 PCHKLKADVKTRWNSSFEMLERFLEQQPAVTATLLDNKLRKGGSEIRTLTEGDLSAAEQVVSLLAPLKAATTLMCEEKQPTVSIIGPLRTKLLTHFEYTQDDTPL---IKDMKRVMAEDLRERYVNEEPFLLRAAALDPRFKKLQFLSDERRNQTFEC-IAEEAAQLKE---------------QRVETPPVS--KKTKVLDD---LFGDSFSTEDQCARKKTSKELANDEIRKY---RDIASLSLGGKVLQWWKAHQAEFPLLADLAQTYLCIPGTSVPSERVFSTAGDIVRSERSVLSSEHVDQLI 563          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: BED-type (domain-containing protein n=4 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2YGN0_ESOLU)

HSP 1 Score: 96.3 bits (238), Expect = 1.670e-18
Identity = 95/314 (30.25%), Postives = 148/314 (47.13%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQ--LCDTLSS-----EGKLNITYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMM-PMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAM--IAAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVASPPRSDLRKKKLVDKSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  K+ T  ATRWNS ++     ++ ++  QQ  +C  L S      G    T +E D TN   +   L+   +AT IM  DS  T S++ PM A  LH      + D ++   +R++   + E++  R+    D  +   A++ DPR K L +    E+ +     +A  VA             A  PS     SP     R+       SLL  T   +     +   RA   E+++YL  ET +  + S+  L WW  H  V+P+L ++A  YL +P +S +SERVFSTAG+I+T +R+ L  E V+ L+
Sbjct:  354 PPHKLKTDVATRWNSAFD-----MIERFLEQQAAICAALLSPEVRKSGTDICTLSETDVTNAEEIAVTLKPIKDATNIMCKDSTPTLSVIAPMHAQLLHDTETGFSGDTQM---VREIKQAIHEDLLKRYSTVADKNLHYTASILDPRFKALPFLSQDEQYDVQSKVIAEAVALED---------YAEVPSGPDEGSP--GPKRRCTPTPLESLLGKTFSDAGVVPKSSNTRAEE-EMKKYL--ETTSPLSLSEDPLIWWRCHETVFPLLAKLAKRYLCIPGTSVASERVFSTAGDILTAQRSMLTPEHVDQLL 645          
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=2 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8IPZ6_NOTKU)

HSP 1 Score: 91.7 bits (226), Expect = 2.380e-17
Identity = 89/315 (28.25%), Postives = 145/315 (46.03%), Query Frame = 1
Query:    1 PVKKIPTHCATRWNSNYEQARVILVYKYYVQQ--LCDTLSS-----EGKLNITYTEADWTNTNAVVELLRLFCEATEIMQGDSVITNSMMPMLASNLHVFCVTKASDMELPQHIRDVADEMFENVEDRFYPPTDCAMIAAVCDPRTKKLQWCESREKKEYHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVAS----PPRSDLRKKKLVDKSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWWFAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAVNNLV 912
            P  ++ T   TRWNS+Y+     ++ ++  QQ  +C  L S       K   T  E+D      VV  L+   +AT +M  +SV T S++  L + L +       D      +RD+   + E++  R+    +   +A+  DPR K L +    E ++ +   + A+V  + +      +    A  ++  AS    PP+       LVD     F +  +      +E   AA  E+++Y     L  T +    L WW  H Q YP L +IA   L +P +S S+ERVFS+AG+IVT +R+ L +E V+ LV
Sbjct:   67 PAHRLITDIITRWNSSYD-----MIERFLEQQPAICAALLSPDVRRSAKEVFTLNESDIMCAEEVVRALKPMKDATMVMSEESVPTLSVIAPLHAKLMMGAQESHDDTPT---VRDIKAAIAEDLGKRYASEKETLHMASAVDPRFKGLPFLSEAETRDIYSRLLEAVVGMIKKKKVEEENVAEDAHINDSCASISQPPPKRPRTSCALVDLLGATFPSTSSDNTEPKSENDLAAG-EIKKYRGEAPLPLTENP---LSWWKNHEQDYPQLSKIAKGLLCIPGTSVSAERVFSSAGDIVTAQRSLLKAEHVDQLV 369          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10136.173.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
zinc5.100e-2129.65finger BED domain-containing protein 1 n=1 Tax=Ory... [more]
BED-type2.430e-2030.16domain-containing protein n=8 Tax=Pseudocrenilabri... [more]
zinc1.890e-1929.90finger BED domain-containing protein 1-like n=1 Ta... [more]
zinc3.270e-1930.09finger BED domain-containing protein 1-like n=4 Ta... [more]
zinc3.900e-1929.56finger BED domain-containing protein 1-like n=1 Ta... [more]
BED-type8.820e-1928.80domain-containing protein n=2 Tax=Amphimedon queen... [more]
Dimer_Tnp_hAT1.080e-1830.72domain-containing protein n=1 Tax=Perca fluviatili... [more]
BED-type1.520e-1829.87domain-containing protein n=1 Tax=Cyprinodon varie... [more]
BED-type1.670e-1830.25domain-containing protein n=4 Tax=Esox lucius TaxI... [more]
Dimer_Tnp_hAT2.380e-1728.25domain-containing protein n=2 Tax=Nothobranchius k... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10136contigEcto-sp9_F_contig10136:1429..2388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score99.0
Seed ortholog evalue4.1e-18
Seed eggNOG ortholog400682.PAC_15719309
EggNOG free text desc.RNA polymerase II regulatory region DNA binding
EggNOG OGs39RW9@33154,3BH13@33208,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size912
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928207.626111-CDS-Ecto-sp9_F_contig10136:1428..17071622928207.626111-CDS-Ecto-sp9_F_contig10136:1428..1707Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10136 1429..1707 -
1692277795.2767224-CDS-Ecto-sp9_F_contig10136:1428..17071692277795.2767224-CDS-Ecto-sp9_F_contig10136:1428..1707Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10136 1429..1707 -
1622928207.6371315-CDS-Ecto-sp9_F_contig10136:1755..23881622928207.6371315-CDS-Ecto-sp9_F_contig10136:1755..2388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10136 1756..2388 -
1692277795.284744-CDS-Ecto-sp9_F_contig10136:1755..23881692277795.284744-CDS-Ecto-sp9_F_contig10136:1755..2388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10136 1756..2388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10136.173.1prot_Ecto-sp9_F_contig10136.173.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10136 1429..2388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10136.173.1

>prot_Ecto-sp9_F_contig10136.173.1 ID=prot_Ecto-sp9_F_contig10136.173.1|Name=mRNA_Ecto-sp9_F_contig10136.173.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=304bp
PVKKIPTHCATRWNSNYEQARVILVYKYYVQQLCDTLSSEGKLNITYTEA
DWTNTNAVVELLRLFCEATEIMQGDSVITNSMMPMLASNLHVFCVTKASD
MELPQHIRDVADEMFENVEDRFYPPTDCAMIAAVCDPRTKKLQWCESREK
KEYHKLTVAAMVATMSEMSRTGSSTLAAAPSDEPVASPPRSDLRKKKLVD
KSSLLFSTLLASPEAILAERKRAAAYELERYLQAETLAATNSSQAVLDWW
FAHRQVYPVLFEIACVYLAVPASSGSSERVFSTAGNIVTKKRNRLCSEAV
NNLV
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mRNA from alignment at Ecto-sp9_F_contig10136:1429..2388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10136.173.1 ID=mRNA_Ecto-sp9_F_contig10136.173.1|Name=mRNA_Ecto-sp9_F_contig10136.173.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=960bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10136:1429..2388- (Ectocarpus species9 EcSCA_722f female)
CCCGTGAAGAAGATCCCAACCCACTGCGCGACTCGGTGGAACTCCAACTA CGAGCAGGCCCGCGTCATACTGGTCTACAAGTACTACGTTCAGCAGCTGT GCGACACCCTTTCCTCGGAGGGAAAGCTGAACATCACGTACACCGAGGCC GACTGGACCAACACGAACGCCGTCGTCGAGCTCCTGCGGCTCTTCTGCGA GGCGACCGAGATCATGCAGGGGGACAGCGTCATCACCAACAGCATGATGC CGATGCTCGCGTCCAACCTCCACGTCTTCTGCGTGACGAAGGCATCCGAC ATGGAGCTTCCGCAGCACATCAGGGACGTGGCGGACGAGATGTTTGAAAA CGTGGAGGATCGCTTCTACCCTCCGACCGATTGCGCGATGATCGCCGCTG TTTGCGACCCTCGCACGAAGAAGCTGCAGTGGTGCGAATCGAGAGAGAAG AAGGAGTACCACAAACTCACGGTCGCCGCGATGGTCGCTACCATGTCCGA GATGAGCCGCACCGGGAGCAGCACTCTCGCGGCCGCCCCCTCCGACGAGC CCGTTGCCTCACCCCCTCGCTCGGACCTCCGCAAGAAGAAGCTGGTCGAC AAGAGTTCGCTTCTCTTCTCCACGCTGCTGGCCGTCTCCACTGTGGTCGA CGACGATAGCGCCCCACCTGTCGCCCCCCAGTCCCCCGAGGCCATATTGG CCGAGCGCAAAAGGGCAGCGGCATACGAACTGGAGCGGTACCTGCAGGCC GAGACCCTGGCTGCCACGAACTCTTCGCAGGCGGTGCTCGATTGGTGGTT CGCCCATCGGCAGGTGTACCCCGTCCTCTTCGAGATAGCGTGCGTCTACC TCGCCGTCCCCGCCTCGTCTGGCAGCTCGGAGCGAGTGTTTTCGACCGCC GGCAACATCGTCACGAAGAAGCGCAACAGGTTGTGTTCGGAGGCGGTGAA CAACCTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10136:1429..2388-

>mRNA_Ecto-sp9_F_contig10136.173.1 ID=mRNA_Ecto-sp9_F_contig10136.173.1|Name=mRNA_Ecto-sp9_F_contig10136.173.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1824bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10136:1429..2388- (Ectocarpus species9 EcSCA_722f female)
CCCGTGAAGAAGATCCCAACCCACTGCGCGACTCGGTGGAACTCCAACTA
CGAGCAGGCCCGCGTCATACTGGTCTACAAGTACTACGTTCAGCAGCTGT
GCGACACCCTTTCCTCGGAGGGAAAGCTGAACATCACGTACACCGAGGCC
GACTGGACCAACACGAACGCCGTCGTCGAGCTCCTGCGGCTCTTCTGCGA
GGCGACCGAGATCATGCAGGGGGACAGCGTCATCACCAACAGCATGATGC
CGATGCTCGCGTCCAACCTCCACGTCTTCTGCGTGACGAAGGCATCCGAC
ATGGAGCTTCCGCAGCACATCAGGGACGTGGCGGACGAGATGTTTGAAAA
CGTGGAGGATCGCTTCTACCCTCCGACCGATTGCGCGATGATCGCCGCTG
TTTGCGACCCTCGCACGAAGAAGCTGCAGTGGTGCGAATCGAGAGAGAAG
AAGGAGTACCACAAACTCACGGTCGCCGCGATGGTCGCTACCATGTCCGA
GATGAGCCGCACCGGGAGCAGCACTCTCGCGGCCGCCCCCTCCGACGAGC
CCGTTGCCTCACCCCCTCGCTCGGACCTCCGCAAGAAGAAGCTGGTCGAC
AAGAGTTCGCTTCTCTTCTCCACGCTGCTGGCCCCCGTGAAGAAGATCCC
AACCCACTGCGCGACTCGGTGGAACTCCAACTACGAGCAGGCCCGCGTCA
TACTGGTCTACAAGTACTACGTTCAGCAGCTGTGCGACACCCTTTCCTCG
GAGGGAAAGCTGAACATCACGTACACCGAGGCCGACTGGACCAACACGAA
CGCCGTCGTCGAGCTCCTGCGGCTCTTCTGCGAGGCGACCGAGATCATGC
AGGGGGACAGCGTCATCACCAACAGCATGATGCCGATGCTCGCGTCCAAC
CTCCACGTCTTCTGCGTGACGAAGGCATCCGACATGGAGCTTCCGCAGCA
CATCAGGGACGTGGCGGACGAGATGTTTGAAAACGTGGAGGATCGCTTCT
ACCCTCCGACCGATTGCGCGATGATCGCCGCTGTTTGCGACCCTCGCACG
AAGAAGCTGCAGTGGTGCGAATCGAGAGAGAAGAAGGAGTACCACAAACT
CACGGTCGCCGCGATGGTCGCTACCATGTCCGAGATGAGCCGCACCGGGA
GCAGCACTCTCGCGGCCGCCCCCTCCGACGAGCCCGTTGCCTCACCCCCT
CGCTCGGACCTCCGCAAGAAGAAGCTGGTCGACAAGAGTTCGCTTCTCTT
CTCCACGCTGCTGGCCTCCCCCGAGGCCATATTGGCCGAGCGCAAAAGGG
CAGCGGCATACGAACTGGAGCGGTACCTGCAGGCCGAGACCCTGGCTGCC
ACGAACTCTTCGCAGGCGGTGCTCGATTGGTGGTTCGCCCATCGGCAGGT
GTACCCCGTCCTCTTCGAGATAGCGTGCGTCTACCTCGCCGTCCCCGCCT
CGTCTGGCAGCTCGGAGCGAGTGTTTTCGACCGCCGGCAACATCGTCACG
AAGAAGCGCAACAGGTTGTGTTCGGAGGCGGTGAACAACCTGGTGTCCCC
CGAGGCCATATTGGCCGAGCGCAAAAGGGCAGCGGCATACGAACTGGAGC
GGTACCTGCAGGCCGAGACCCTGGCTGCCACGAACTCTTCGCAGGCGGTG
CTCGATTGGTGGTTCGCCCATCGGCAGGTGTACCCCGTCCTCTTCGAGAT
AGCGTGCGTCTACCTCGCCGTCCCCGCCTCGTCTGGCAGCTCGGAGCGAG
TGTTTTCGACCGCCGGCAACATCGTCACGAAGAAGCGCAACAGGTTGTGT
TCGGAGGCGGTGAACAACCTGGTG
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