mRNA_Ecto-sp9_F_contig10135.172.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10135.172.1
Unique NamemRNA_Ecto-sp9_F_contig10135.172.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.310e-44
Identity = 80/109 (73.39%), Postives = 90/109 (82.57%), Query Frame = 1
Query:   10 LIEKVYPDLLEANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            L++ V P   E   T T  DRGILAPT+ +ID+++DF+LRKMPG VH+QLSSDKI+K DENMPDV SVEYLN IN  GTPPHKLNLK GALIFFIRNIDFDCGLVNGKR
Sbjct:  538 LVQSV-PTSYELTATSTTTDRGILAPTSDDIDQIHDFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKR 645          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y0_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.950e-20
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query:  193 MPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGK 333
            MPD+VS+EYLNSINV GTPPHK NLK GALIFFIRNI+FDCG VNG 
Sbjct:    1 MPDIVSLEYLNSINVPGTPPHKFNLKFGALIFFIRNINFDCGPVNGN 47          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: uncharacterized (protein LOC114712509 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A481F3)

HSP 1 Score: 93.2 bits (230), Expect = 8.660e-20
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   10 LIEKVYPDLLE--ANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMP---DVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            ++   YPDLL   A++ Y +NDR ILAPT   ++++N +M   +PG   + LS D + K D+ +    D+ + E+LN+I+  G PPHKL LKVGA I  +RNID   GL NG R
Sbjct: 1295 IVHSTYPDLLHNLASNDY-FNDRAILAPTIEMVNQINYYMCSLLPGDSFQFLSCDTVCKADQEIDTVDDLYNTEFLNTISCSGMPPHKLELKVGAPIMLLRNIDQASGLCNGTR 1407          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase (Fragment) n=1 Tax=Zea mays TaxID=4577 RepID=A0A317YKU2_MAIZE)

HSP 1 Score: 91.3 bits (225), Expect = 3.890e-19
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   10 LIEKVYPDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPD---VVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            L+ KVYPD L      TY + R I+ P N  ID +N ++L  +PG   + LS D I K  EN+PD   +   E+LNSI+    P HKL LK GA++  +RN++ + GL NG R
Sbjct:  422 LVSKVYPDFLLNYRDPTYLSSRAIVCPNNATIDDINSYILSLVPGDTIQYLSCDVIAKSSENIPDFDVLYPTEFLNSIDANNFPTHKLELKKGAIVMLLRNLNQNKGLCNGTR 534          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4C2V7_ARADU)

HSP 1 Score: 89.7 bits (221), Expect = 4.820e-19
Identity = 54/114 (47.37%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    7 DLIEKVYPDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMP---DVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            DLI+ VYPD+L       Y  DR ILAPT   +  VN+ M   +PG     LSSD +   + NM    D    E LN IN LG PPHKL LKVGAL+  +RNID   GL N  R
Sbjct:  166 DLIDFVYPDMLSNLSVENYFKDRAILAPTLDCVTDVNNKMTAGLPGQERVYLSSDSVCAKEGNMKFELDAFLPEILNGINCLGLPPHKLVLKVGALVMLLRNIDQTNGLCNETR 279          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LX16_RAPSA)

HSP 1 Score: 90.9 bits (224), Expect = 5.600e-19
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   61 YNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPD--VVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            Y  R IL PTN  +DK+ND+ML K+PG     LSSD II  D ++ +  V   E+LNS+ V G P H L LKVGA I  +RNID   GL NG R
Sbjct: 1440 YRHRAILTPTNDEVDKINDYMLPKLPGEEKVYLSSDSIIPSDVDIQENVVYPAEFLNSVKVAGLPRHCLKLKVGAPIMCLRNIDVADGLCNGTR 1533          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: uncharacterized (protein LOC114731164 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3BA04)

HSP 1 Score: 87.4 bits (215), Expect = 6.590e-19
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   10 LIEKVYPDLLE-ANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDEN---MPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            + +  Y DL E  + +  +NDR ILA     ++++N+ M   +PG +H   S D + K +E+   M ++   E+LN+IN  G PPHKL LK+GA I  +RNID   GL NG R
Sbjct:   58 MFQSTYGDLFENISSSQYFNDRAILASHIETVNQINEHMCAMLPGELHDFFSCDSVCKSNEDCDGMDNLYPTEFLNTINCSGMPPHKLQLKIGAPIMLLRNIDQVAGLCNGTR 170          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LA50_9BRAS)

HSP 1 Score: 85.5 bits (210), Expect = 7.340e-19
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    4 EDLIEKVY--PDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHD---ENMPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            E +  +VY  PD+ E +    Y  DR IL PTN ++D +N FMLRK+PG     LS+D I   D    N P + + ++LNSI V G P H L LK+G  +  +RNID   GL NG R
Sbjct:    2 EVISNEVYSDPDMFEVDKDPRYFQDRAILCPTNDDVDLINQFMLRKIPGEERTYLSADSIDPMDIAARNNP-IFTPDFLNSIKVPGLPRHLLCLKIGTPVMLLRNIDSKGGLCNGTR 117          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226EYJ4_FOLCA)

HSP 1 Score: 90.1 bits (222), Expect = 1.040e-18
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 EDLIEKVYPDLLEANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            ++++  ++ D L   +  T++ R IL PTN ++DK ND +L  + G     +S+D ++   ++  D   VE+LNS+N  G PPH+L LKVGALI  +RN++   GL NG R
Sbjct:  987 DNIVRDIFEDSLTPENVETFSSRAILCPTNADVDKSNDQVLDILIGDNKTYISTDSLMTDVDSDRDDYPVEFLNSLNPSGMPPHELKLKVGALIILLRNLNTKRGLCNGTR 1097          
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4DYH8_ARADU)

HSP 1 Score: 86.7 bits (213), Expect = 1.120e-18
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    4 EDLIEKVYPDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMP---DVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
            +DLI+ VYPD+L       Y NDR I APT   +  VN+ M  ++ G     L+ D +   +ENM    D  S E LN IN LG PPHKL +KVGAL+  + NID   GL N  R
Sbjct:   86 DDLIDFVYPDMLSNLSVENYFNDRAIRAPTLDCVTDVNNKMTARLLGQERVYLNFDSVCAEEENMEFDLDAFSPEILNGINCLGVPPHKLIVKVGALVMLLGNIDQTNGLCNETR 200          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATP-dependent1.310e-4473.39DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
ATP-dependent1.950e-2082.98DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
uncharacterized8.660e-2043.86protein LOC114712509 n=3 Tax=Prosopis alba TaxID=2... [more]
ATP-dependent3.890e-1942.48DNA helicase (Fragment) n=1 Tax=Zea mays TaxID=457... [more]
ATP-dependent4.820e-1947.37DNA helicase n=1 Tax=Arachis duranensis TaxID=1304... [more]
ATP-dependent5.600e-1951.06DNA helicase n=1 Tax=Raphanus sativus TaxID=3726 R... [more]
uncharacterized6.590e-1939.82protein LOC114731164 n=1 Tax=Prosopis alba TaxID=2... [more]
ATP-dependent7.340e-1943.59DNA helicase n=1 Tax=Microthlaspi erraticum TaxID=... [more]
ATP-dependent1.040e-1838.74DNA helicase n=2 Tax=Folsomia candida TaxID=158441... [more]
ATP-dependent1.120e-1844.35DNA helicase n=1 Tax=Arachis duranensis TaxID=1304... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10135contigEcto-sp9_F_contig10135:1219..1554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.2e-38
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928207.5877194-CDS-Ecto-sp9_F_contig10135:1218..15541622928207.5877194-CDS-Ecto-sp9_F_contig10135:1218..1554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10135 1219..1554 +
1692277795.2653558-CDS-Ecto-sp9_F_contig10135:1218..15541692277795.2653558-CDS-Ecto-sp9_F_contig10135:1218..1554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10135 1219..1554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10135.172.1prot_Ecto-sp9_F_contig10135.172.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10135 1219..1554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10135.172.1

>prot_Ecto-sp9_F_contig10135.172.1 ID=prot_Ecto-sp9_F_contig10135.172.1|Name=mRNA_Ecto-sp9_F_contig10135.172.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp
FEDLIEKVYPDLLEANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVH
KQLSSDKIIKHDENMPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRN
IDFDCGLVNGKR
back to top

mRNA from alignment at Ecto-sp9_F_contig10135:1219..1554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10135.172.1 ID=mRNA_Ecto-sp9_F_contig10135.172.1|Name=mRNA_Ecto-sp9_F_contig10135.172.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10135:1219..1554+ (Ectocarpus species9 EcSCA_722f female)
TTTGAAGACCTCATTGAAAAAGTCTACCCCGACCTCTTAGAAGCTAACCA CACTTACACCTACAACGACCGCGGCATTCTAGCACCCACAAATGGTAACA TTGACAAGGTCAATGACTTCATGCTTCGTAAAATGCCAGGAGGTGTTCAC AAACAGCTTAGTTCAGACAAGATCATCAAACACGACGAAAACATGCCAGA TGTTGTTTCCGTCGAATACCTCAATAGCATCAACGTTCTCGGCACGCCAC CGCACAAACTCAACCTCAAAGTTGGAGCATTGATCTTCTTCATCAGGAAC ATTGACTTTGATTGCGGTCTCGTCAATGGCAAACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10135:1219..1554+

>mRNA_Ecto-sp9_F_contig10135.172.1 ID=mRNA_Ecto-sp9_F_contig10135.172.1|Name=mRNA_Ecto-sp9_F_contig10135.172.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10135:1219..1554+ (Ectocarpus species9 EcSCA_722f female)
TTTGAAGACCTCATTGAAAAAGTCTACCCCGACCTCTTAGAAGCTAACCA
CACTTACACCTACAACGACCGCGGCATTCTAGCACCCACAAATGGTAACA
TTGACAAGGTCAATGACTTCATGCTTCGTAAAATGCCAGGAGGTGTTCAC
AAACAGCTTAGTTCAGACAAGATCATCAAACACGACGAAAACATGCCAGA
TGTTGTTTCCGTCGAATACCTCAATAGCATCAACGTTCTCGGCACGCCAC
CGCACAAACTCAACCTCAAAGTTGGAGCATTGATCTTCTTCATCAGGAAC
ATTGACTTTGATTGCGGTCTCGTCAATGGCAAACGGTTTGAAGACCTCAT
TGAAAAAGTCTACCCCGACCTCTTAGAAGCTAACCACACTTACACCTACA
ACGACCGCGGCATTCTAGCACCCACAAATGGTAACATTGACAAGGTCAAT
GACTTCATGCTTCGTAAAATGCCAGGAGGTGTTCACAAACAGCTTAGTTC
AGACAAGATCATCAAACACGACGAAAACATGCCAGATGTTGTTTCCGTCG
AATACCTCAATAGCATCAACGTTCTCGGCACGCCACCGCACAAACTCAAC
CTCAAAGTTGGAGCATTGATCTTCTTCATCAGGAACATTGACTTTGATTG
CGGTCTCGTCAATGGCAAACGG
back to top