mRNA_Ecto-sp9_F_contig10135.172.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.310e-44 Identity = 80/109 (73.39%), Postives = 90/109 (82.57%), Query Frame = 1
Query: 10 LIEKVYPDLLEANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
L++ V P E T T DRGILAPT+ +ID+++DF+LRKMPG VH+QLSSDKI+K DENMPDV SVEYLN IN GTPPHKLNLK GALIFFIRNIDFDCGLVNGKR
Sbjct: 538 LVQSV-PTSYELTATSTTTDRGILAPTSDDIDQIHDFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKR 645
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y0_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.950e-20 Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query: 193 MPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGK 333
MPD+VS+EYLNSINV GTPPHK NLK GALIFFIRNI+FDCG VNG
Sbjct: 1 MPDIVSLEYLNSINVPGTPPHKFNLKFGALIFFIRNINFDCGPVNGN 47
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: uncharacterized (protein LOC114712509 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A481F3) HSP 1 Score: 93.2 bits (230), Expect = 8.660e-20 Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 10 LIEKVYPDLLE--ANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMP---DVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
++ YPDLL A++ Y +NDR ILAPT ++++N +M +PG + LS D + K D+ + D+ + E+LN+I+ G PPHKL LKVGA I +RNID GL NG R
Sbjct: 1295 IVHSTYPDLLHNLASNDY-FNDRAILAPTIEMVNQINYYMCSLLPGDSFQFLSCDTVCKADQEIDTVDDLYNTEFLNTISCSGMPPHKLELKVGAPIMLLRNIDQASGLCNGTR 1407
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase (Fragment) n=1 Tax=Zea mays TaxID=4577 RepID=A0A317YKU2_MAIZE) HSP 1 Score: 91.3 bits (225), Expect = 3.890e-19 Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 10 LIEKVYPDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPD---VVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
L+ KVYPD L TY + R I+ P N ID +N ++L +PG + LS D I K EN+PD + E+LNSI+ P HKL LK GA++ +RN++ + GL NG R
Sbjct: 422 LVSKVYPDFLLNYRDPTYLSSRAIVCPNNATIDDINSYILSLVPGDTIQYLSCDVIAKSSENIPDFDVLYPTEFLNSIDANNFPTHKLELKKGAIVMLLRNLNQNKGLCNGTR 534
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4C2V7_ARADU) HSP 1 Score: 89.7 bits (221), Expect = 4.820e-19 Identity = 54/114 (47.37%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 7 DLIEKVYPDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMP---DVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
DLI+ VYPD+L Y DR ILAPT + VN+ M +PG LSSD + + NM D E LN IN LG PPHKL LKVGAL+ +RNID GL N R
Sbjct: 166 DLIDFVYPDMLSNLSVENYFKDRAILAPTLDCVTDVNNKMTAGLPGQERVYLSSDSVCAKEGNMKFELDAFLPEILNGINCLGLPPHKLVLKVGALVMLLRNIDQTNGLCNETR 279
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LX16_RAPSA) HSP 1 Score: 90.9 bits (224), Expect = 5.600e-19 Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 1
Query: 61 YNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPD--VVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
Y R IL PTN +DK+ND+ML K+PG LSSD II D ++ + V E+LNS+ V G P H L LKVGA I +RNID GL NG R
Sbjct: 1440 YRHRAILTPTNDEVDKINDYMLPKLPGEEKVYLSSDSIIPSDVDIQENVVYPAEFLNSVKVAGLPRHCLKLKVGAPIMCLRNIDVADGLCNGTR 1533
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: uncharacterized (protein LOC114731164 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3BA04) HSP 1 Score: 87.4 bits (215), Expect = 6.590e-19 Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 10 LIEKVYPDLLE-ANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDEN---MPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
+ + Y DL E + + +NDR ILA ++++N+ M +PG +H S D + K +E+ M ++ E+LN+IN G PPHKL LK+GA I +RNID GL NG R
Sbjct: 58 MFQSTYGDLFENISSSQYFNDRAILASHIETVNQINEHMCAMLPGELHDFFSCDSVCKSNEDCDGMDNLYPTEFLNTINCSGMPPHKLQLKIGAPIMLLRNIDQVAGLCNGTR 170
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LA50_9BRAS) HSP 1 Score: 85.5 bits (210), Expect = 7.340e-19 Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 4 EDLIEKVY--PDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHD---ENMPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
E + +VY PD+ E + Y DR IL PTN ++D +N FMLRK+PG LS+D I D N P + + ++LNSI V G P H L LK+G + +RNID GL NG R
Sbjct: 2 EVISNEVYSDPDMFEVDKDPRYFQDRAILCPTNDDVDLINQFMLRKIPGEERTYLSADSIDPMDIAARNNP-IFTPDFLNSIKVPGLPRHLLCLKIGTPVMLLRNIDSKGGLCNGTR 117
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226EYJ4_FOLCA) HSP 1 Score: 90.1 bits (222), Expect = 1.040e-18 Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 4 EDLIEKVYPDLLEANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMPDVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
++++ ++ D L + T++ R IL PTN ++DK ND +L + G +S+D ++ ++ D VE+LNS+N G PPH+L LKVGALI +RN++ GL NG R
Sbjct: 987 DNIVRDIFEDSLTPENVETFSSRAILCPTNADVDKSNDQVLDILIGDNKTYISTDSLMTDVDSDRDDYPVEFLNSLNPSGMPPHELKLKVGALIILLRNLNTKRGLCNGTR 1097
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4DYH8_ARADU) HSP 1 Score: 86.7 bits (213), Expect = 1.120e-18 Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 4 EDLIEKVYPDLLEANHTYTY-NDRGILAPTNGNIDKVNDFMLRKMPGGVHKQLSSDKIIKHDENMP---DVVSVEYLNSINVLGTPPHKLNLKVGALIFFIRNIDFDCGLVNGKR 336
+DLI+ VYPD+L Y NDR I APT + VN+ M ++ G L+ D + +ENM D S E LN IN LG PPHKL +KVGAL+ + NID GL N R
Sbjct: 86 DDLIDFVYPDMLSNLSVENYFNDRAIRAPTLDCVTDVNNKMTARLLGQERVYLNFDSVCAEEENMEFDLDAFSPEILNGINCLGVPPHKLIVKVGALVMLLGNIDQTNGLCNETR 200 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10135.172.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10135.172.1 >prot_Ecto-sp9_F_contig10135.172.1 ID=prot_Ecto-sp9_F_contig10135.172.1|Name=mRNA_Ecto-sp9_F_contig10135.172.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp FEDLIEKVYPDLLEANHTYTYNDRGILAPTNGNIDKVNDFMLRKMPGGVHback to top mRNA from alignment at Ecto-sp9_F_contig10135:1219..1554+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10135.172.1 ID=mRNA_Ecto-sp9_F_contig10135.172.1|Name=mRNA_Ecto-sp9_F_contig10135.172.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10135:1219..1554+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10135:1219..1554+ >mRNA_Ecto-sp9_F_contig10135.172.1 ID=mRNA_Ecto-sp9_F_contig10135.172.1|Name=mRNA_Ecto-sp9_F_contig10135.172.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10135:1219..1554+ (Ectocarpus species9 EcSCA_722f female)back to top |