mRNA_Ecto-sp9_F_contig1013.165.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1013.165.1 vs.
Match: ARID/BRIGHT (DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI) HSP 1 Score: 270 bits (691), Expect = 3.170e-86 Identity = 189/417 (45.32%), Postives = 189/417 (45.32%), Query Frame = 1
Query: 16 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGAVLRDVPMVQGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPPRSSAGXXXXXXXXXXXXXXXXXXXXXDVVPSMGRDQHAGVGTQRYEQHGHYQRQMRQRELEQXXXXXXXXRHMEQMSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGDSYSRGGGVYPSQDSYRSRGPSHGGGVGVSASIPRADLPRALGSGSATEVCEAVNTLTLETYGTAEEELVLDHVPGLLDAIFDLMDKLNPAIAQ 1266
MDERAVAALESLYSGPIKA ELVRAREIFAFLR NGQGAVLRDVPMV GKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR HAGVGTQRYEQHGHYQRQMRQRELEQ L RALGSGSATEVCEAVNTLTLETYGTAEEELVLDHVPGLLDAIFDLMDKLNPAIAQ
Sbjct: 1 MDERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR------------------------------------------HAGVGTQRYEQHGHYQRQMRQRELEQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLARALGSGSATEVCEAVNTLTLETYGTAEEELVLDHVPGLLDAIFDLMDKLNPAIAQ 194
BLAST of mRNA_Ecto-sp9_F_contig1013.165.1 vs.
Match: ARID (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE) HSP 1 Score: 265 bits (678), Expect = 1.280e-84 Identity = 162/181 (89.50%), Postives = 162/181 (89.50%), Query Frame = 1
Query: 16 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGAVLRDVPMVQGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPPRSSAGXXXXXXXXXXXXXXXXXXXXXDVVPSMGRDQHAG---VGTQRYEQHGHYQRQMRQRELEQ 549
MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQG VLRDVPMV GKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ VHFP RSSAG XXXXXXXXXXXXXX VVP MGRDQHAG VGTQRYEQHGHYQ QMRQRELEQ
Sbjct: 1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ---VHFPSRSSAGQHQXXXXXXXXXXXXXX-----VVPPMGRDQHAGMSGVGTQRYEQHGHYQGQMRQRELEQ 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1013.165.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1013.165.1 >prot_Ecto-sp9_F_contig1013.165.1 ID=prot_Ecto-sp9_F_contig1013.165.1|Name=mRNA_Ecto-sp9_F_contig1013.165.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=417bp MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGAVLRDVPMVQGKback to top mRNA from alignment at Ecto-sp9_F_contig1013:33..5490- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1013.165.1 ID=mRNA_Ecto-sp9_F_contig1013.165.1|Name=mRNA_Ecto-sp9_F_contig1013.165.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5458bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1013:33..5490- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1013:33..5490- >mRNA_Ecto-sp9_F_contig1013.165.1 ID=mRNA_Ecto-sp9_F_contig1013.165.1|Name=mRNA_Ecto-sp9_F_contig1013.165.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2502bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1013:33..5490- (Ectocarpus species9 EcSCA_722f female)back to top |