mRNA_Ecto-sp9_F_contig10129.164.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10129.164.1
Unique NamemRNA_Ecto-sp9_F_contig10129.164.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10129.164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L556_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 1.790e-95
Identity = 368/449 (81.96%), Postives = 369/449 (82.18%), Query Frame = 2 
Query:  275 MLKAHKRKTRRISSGGGSARSVSPRPSFGAEPGRRSAAPGRRKSKTAPTSPLDAPAPTTQQQQALETAPXXKQEQPGREGKSYSERTLASGSXXXXXXXXXXXXXXXXXXXXXXXX-----RHKRGSSEPTMASVFTEWFQKLFAPNDEGKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDDVRSNITSVATSDGARPSSPSSXXXXXXXXXXXX------QRHLDTAAAGTAPAETEGKQQRPSSSNDGDAARPGAQLPAPTEESAPATSIAGQSVDGAAXXXXXXXXXXXXXXXXXPALS---PRFLGIFSRGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXVDVAPPGPDAGGVGVKPPAAPEEAPSFGGGEGPLQQPRQPLTDRASAAEGAGLGAQA 1579
            MLKAHKRKTRRISSGGGSARSVSPRPSFGAEPGRRSAAPGRRKSKTAPTSPLDAPA TTQQQ  L TAP  KQE P REGK YSERTLASGS  XXXXXXXXXXXXXXXXXXXXXX     RHK GSSE TMASVFTEWFQKLFAPNDEGKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        ITSVATSDGARPSS   XXXXXXXXXXXX      QRHL   AAG APAET GKQQ PSSSNDGDAARP AQ PAPTEESAPAT           XXXXXXXXXXXXXXXXX       PRFLGIFSRGSSS XXXXXXXXXXXXXXXXXXXXXXXXXXX             XXX XXXXXXXXX   VDVAPPGPD+GGVGVKPPAAPEEAPSFGGGEGPLQQPRQPLTDRASAAEGAGLG QA
Sbjct:    1 MLKAHKRKTRRISSGGGSARSVSPRPSFGAEPGRRSAAPGRRKSKTAPTSPLDAPAQTTQQQ-GLGTAPLPKQE-PDREGKHYSERTLASGSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKGGSSELTMASVFTEWFQKLFAPNDEGKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXITSVATSDGARPSSXXXXXXXXXXXXXXXXXXXXAQRHLGAGAAGIAPAETAGKQQHPSSSNDGDAARPCAQSPAPTEESAPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRFLGIFSRGSSS-XXXXXXXXXXXXXXXXXXXXXXXXXXXSGALPAAGTTSAAXXXXXXXXXXXXXGTVVDVAPPGPDSGGVGVKPPAAPEEAPSFGGGEGPLQQPRQPLTDRASAAEGAGLGTQA 444
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10129.164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G543_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.540e-22
Identity = 158/304 (51.97%), Postives = 160/304 (52.63%), Query Frame = 2 
Query:  653 MASVFTEWFQKLFAPNDEGKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDDVRSNITSVATSDGARPSSPSSXXXXXXXXXXXXQRHLDTAAAGTAPAETEGKQQRPSSSNDGDAARPGAQLPAPTEESAPATSIAGQSVDGAAXXXXXXXXXXXXXXXXXPALSPRFLGIFSRGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXVDVAPPGPDAGGVGVKPPAAPEEAPSFGGGEGPLQQPRQPLTDRASAAEGAG 1564
            MASVFTEWFQKLFAPNDEGKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VRSNITSVATSDGARPSSPS XXXXXXXXXXXXQRHL  AAAGTAPAETE KQQ  SSSNDG                                                                                                                                      VGVKPPAAPEEAPSFGGGEGP+QQPRQPLTDR+SAAEGAG
Sbjct:    1 MASVFTEWFQKLFAPNDEGKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VRSNITSVATSDGARPSSPSXXXXXXXXXXXXXQRHLG-AAAGTAPAETEAKQQHISSSNDG--------------------------------------------------------------------------------------------------------------------------------------VGVKPPAAPEEAPSFGGGEGPVQQPRQPLTDRSSAAEGAG 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10129.164.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.790e-9581.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.540e-2251.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10129contigEcto-sp9_F_contig10129:1408..3046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7G543
KEGG koko:K04688,ko:K08286,ko:K13303
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04350,ko04371,ko04666,ko04714,ko04910,ko04931,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04066,map04068,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04350,map04371,map04666,map04714,map04910,map04931,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231
EggNOG free text desc.glycogen cell differentiation involved in embryonic placenta development
EggNOG OGsCOG0515@1,KOG0690@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase, C-terminal
Ec32 orthologEc-00_008440.1
Exons1
Model size1640
Cds size1365
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.7540295-UTR-Ecto-sp9_F_contig10129:1407..16811622928206.7540295-UTR-Ecto-sp9_F_contig10129:1407..1681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10129 1408..1681 +
1692277794.904619-UTR-Ecto-sp9_F_contig10129:1407..16811692277794.904619-UTR-Ecto-sp9_F_contig10129:1407..1681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10129 1408..1681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.7660327-CDS-Ecto-sp9_F_contig10129:1681..30461622928206.7660327-CDS-Ecto-sp9_F_contig10129:1681..3046Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10129 1682..3046 +
1692277794.9154851-CDS-Ecto-sp9_F_contig10129:1681..30461692277794.9154851-CDS-Ecto-sp9_F_contig10129:1681..3046Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10129 1682..3046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10129.164.1prot_Ecto-sp9_F_contig10129.164.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10129 1682..3046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10129.164.1

>prot_Ecto-sp9_F_contig10129.164.1 ID=prot_Ecto-sp9_F_contig10129.164.1|Name=mRNA_Ecto-sp9_F_contig10129.164.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=455bp
MLKAHKRKTRRISSGGGSARSVSPRPSFGAEPGRRSAAPGRRKSKTAPTS
PLDAPAPTTQQQQALETAPPPKQEQPGREGKSYSERTLASGSNGGGGGVP
GTAAAAGRRDGNDDSSRHKRGSSEPTMASVFTEWFQKLFAPNDEGKGKGG
GGGSAGTPAAAAAGRAAGRAAGASGAASAAGKGGNEKGASDGDDVRSNIT
SVATSDGARPSSPSSEQASSAAAAAAAQRHLDTAAAGTAPAETEGKQQRP
SSSNDGDAARPGAQLPAPTEESAPATSIAGQSVDGAAAAASAAAAGGEQQ
QQQQPALSPRFLGIFSRGSSSGSAGSSSGKGKEDGGGGGGKAGSSAGTSG
TPPAAGTVAAAAAASTGAGGAPAAGGAVVDVAPPGPDAGGVGVKPPAAPE
EAPSFGGGEGPLQQPRQPLTDRASAAEGAGLGAQAAGATAAGAEAAAAAA
AGAGR
back to top

mRNA from alignment at Ecto-sp9_F_contig10129:1408..3046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10129.164.1 ID=mRNA_Ecto-sp9_F_contig10129.164.1|Name=mRNA_Ecto-sp9_F_contig10129.164.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1639bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10129:1408..3046+ (Ectocarpus species9 EcSCA_722f female)
TCAACTCTCGGGCGCTTGTAAGCTGGCTCTCCTCGACCCCCTGGAGCGCC
TACCTCTACCCTTATCCGAGGTACTACGTCTGGACCAGTCTTGTACTGCG
TGGGCGGTCGCAGTCGGCAATCATCGTTTATTTCTCCAACTAGACAGGGG
GGGACGACACCCAGGGGGCACCAACTCCAACGCCACCTCTCTCTAAATAT
AGTGCGAACGCGCAGGGCACGCGTGTGTGTCTTTTCTTCACACGCCGTCT
TGTCTTGGGGAGCAGGCAGGCCGCATGCTCAAGGCACACAAGAGAAAGAC
CCGTAGAATCAGCAGTGGGGGAGGGAGCGCCCGTAGCGTCTCTCCGAGGC
CTTCTTTTGGAGCGGAGCCCGGGCGGCGTTCGGCTGCTCCAGGAAGACGA
AAGTCGAAAACCGCTCCAACGAGCCCGCTCGACGCCCCCGCCCCGACGAC
ACAACAACAACAAGCGCTGGAGACGGCGCCTCCACCGAAGCAGGAGCAGC
CAGGCCGGGAGGGGAAGTCTTATTCAGAACGCACGCTAGCGAGCGGGAGC
AACGGCGGAGGCGGCGGCGTCCCAGGCACAGCGGCAGCAGCAGGAAGGCG
CGACGGGAACGACGACAGCAGCAGGCACAAGCGAGGCTCGAGCGAGCCGA
CCATGGCGAGCGTCTTCACCGAATGGTTTCAAAAACTCTTCGCTCCCAAC
GACGAGGGCAAGGGCAAGGGCGGCGGTGGCGGCAGCGCGGGAACACCGGC
CGCTGCGGCGGCTGGCAGGGCGGCCGGCAGGGCGGCTGGTGCTTCCGGCG
CGGCCTCTGCTGCCGGGAAGGGCGGCAACGAAAAGGGTGCTTCGGACGGA
GACGATGTGCGGTCTAACATAACCTCTGTCGCAACGAGCGACGGCGCGAG
ACCCTCGTCCCCCTCCTCGGAACAAGCCTCCAGCGCCGCGGCTGCGGCTG
CGGCCCAGCGGCATCTGGACACTGCTGCTGCGGGCACCGCCCCCGCGGAG
ACGGAGGGAAAGCAACAACGCCCGTCTTCATCCAACGATGGTGATGCTGC
CCGGCCGGGGGCGCAATTACCCGCTCCCACCGAAGAGAGCGCTCCTGCAA
CAAGCATCGCGGGACAAAGCGTAGACGGCGCCGCCGCCGCTGCCTCCGCC
GCCGCAGCAGGGGGAGAGCAGCAGCAGCAACAGCAGCCCGCCCTCAGCCC
CCGCTTCCTGGGCATATTCTCGCGCGGAAGCAGCAGCGGCTCGGCCGGCA
GCAGCAGCGGGAAGGGAAAGGAAGACGGCGGCGGTGGCGGTGGCAAGGCG
GGTTCTTCCGCAGGAACCAGCGGTACCCCTCCGGCGGCAGGGACGGTAGC
AGCAGCAGCAGCAGCCTCGACGGGGGCGGGGGGAGCACCGGCAGCAGGAG
GGGCCGTGGTAGACGTTGCGCCACCGGGCCCCGACGCCGGAGGCGTCGGC
GTCAAGCCCCCCGCCGCGCCCGAGGAAGCACCGTCCTTCGGGGGCGGGGA
AGGGCCGCTGCAGCAACCACGGCAACCCTTAACGGACAGGGCGTCAGCAG
CAGAGGGAGCTGGGCTGGGAGCGCAAGCTGCTGGTGCTACAGCGGCGGGG
GCGGAAGCGGCGGCGGCGGCGGCGGCCGGGGCTGGGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10129:1408..3046+

>mRNA_Ecto-sp9_F_contig10129.164.1 ID=mRNA_Ecto-sp9_F_contig10129.164.1|Name=mRNA_Ecto-sp9_F_contig10129.164.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2730bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10129:1408..3046+ (Ectocarpus species9 EcSCA_722f female)
ATGCTCAAGGCACACAAGAGAAAGACCCGTAGAATCAGCAGTGGGGGAGG
GAGCGCCCGTAGCGTCTCTCCGAGGCCTTCTTTTGGAGCGGAGCCCGGGC
GGCGTTCGGCTGCTCCAGGAAGACGAAAGTCGAAAACCGCTCCAACGAGC
CCGCTCGACGCCCCCGCCCCGACGACACAACAACAACAAGCGCTGGAGAC
GGCGCCTCCACCGAAGCAGGAGCAGCCAGGCCGGGAGGGGAAGTCTTATT
CAGAACGCACGCTAGCGAGCGGGAGCAACGGCGGAGGCGGCGGCGTCCCA
GGCACAGCGGCAGCAGCAGGAAGGCGCGACGGGAACGACGACAGCAGCAG
GCACAAGCGAGGCTCGAGCGAGCCGACCATGGCGAGCGTCTTCACCGAAT
GGTTTCAAAAACTCTTCGCTCCCAACGACGAGGGCAAGGGCAAGGGCGGC
GGTGGCGGCAGCGCGGGAACACCGGCCGCTGCGGCGGCTGGCAGGGCGGC
CGGCAGGGCGGCTGGTGCTTCCGGCGCGGCCTCTGCTGCCGGGAAGGGCG
GCAACGAAAAGGGTGCTTCGGACGGAGACGATGTGCGGTCTAACATAACC
TCTGTCGCAACGAGCGACGGCGCGAGACCCTCGTCCCCCTCCTCGGAACA
AGCCTCCAGCGCCGCGGCTGCGGCTGCGGCCCAGCGGCATCTGGACACTG
CTGCTGCGGGCACCGCCCCCGCGGAGACGGAGGGAAAGCAACAACGCCCG
TCTTCATCCAACGATGGTGATGCTGCCCGGCCGGGGGCGCAATTACCCGC
TCCCACCGAAGAGAGCGCTCCTGCAACAAGCATCGCGGGACAAAGCGTAG
ACGGCGCCGCCGCCGCTGCCTCCGCCGCCGCAGCAGGGGGAGAGCAGCAG
CAGCAACAGCAGCCCGCCCTCAGCCCCCGCTTCCTGGGCATATTCTCGCG
CGGAAGCAGCAGCGGCTCGGCCGGCAGCAGCAGCGGGAAGGGAAAGGAAG
ACGGCGGCGGTGGCGGTGGCAAGGCGGGTTCTTCCGCAGGAACCAGCGGT
ACCCCTCCGGCGGCAGGGACGGTAGCAGCAGCAGCAGCAGCCTCGACGGG
GGCGGGGGGAGCACCGGCAGCAGGAGGGGCCGTGGTAGACGTTGCGCCAC
CGGGCCCCGACGCCGGAGGCGTCGGCGTCAAGCCCCCCGCCGCGCCCGAG
GAAGCACCGTCCTTCGGGGGCGGGGAAGGGCCGCTGCAGCAACCACGGCA
ACCCTTAACGGACAGGGCGTCAGCAGCAGAGGGAGCTGGGCTGGGAGCGC
AAGCTGCTGGTGCTACAGCGGCGGGGGCGGAAGCGGCGGCGGCGGCGGCG
GCCGGGGCTGGGAGGATGCTCAAGGCACACAAGAGAAAGACCCGTAGAAT
CAGCAGTGGGGGAGGGAGCGCCCGTAGCGTCTCTCCGAGGCCTTCTTTTG
GAGCGGAGCCCGGGCGGCGTTCGGCTGCTCCAGGAAGACGAAAGTCGAAA
ACCGCTCCAACGAGCCCGCTCGACGCCCCCGCCCCGACGACACAACAACA
ACAAGCGCTGGAGACGGCGCCTCCACCGAAGCAGGAGCAGCCAGGCCGGG
AGGGGAAGTCTTATTCAGAACGCACGCTAGCGAGCGGGAGCAACGGCGGA
GGCGGCGGCGTCCCAGGCACAGCGGCAGCAGCAGGAAGGCGCGACGGGAA
CGACGACAGCAGCAGGCACAAGCGAGGCTCGAGCGAGCCGACCATGGCGA
GCGTCTTCACCGAATGGTTTCAAAAACTCTTCGCTCCCAACGACGAGGGC
AAGGGCAAGGGCGGCGGTGGCGGCAGCGCGGGAACACCGGCCGCTGCGGC
GGCTGGCAGGGCGGCCGGCAGGGCGGCTGGTGCTTCCGGCGCGGCCTCTG
CTGCCGGGAAGGGCGGCAACGAAAAGGGTGCTTCGGACGGAGACGATGTG
CGGTCTAACATAACCTCTGTCGCAACGAGCGACGGCGCGAGACCCTCGTC
CCCCTCCTCGGAACAAGCCTCCAGCGCCGCGGCTGCGGCTGCGGCCCAGC
GGCATCTGGACACTGCTGCTGCGGGCACCGCCCCCGCGGAGACGGAGGGA
AAGCAACAACGCCCGTCTTCATCCAACGATGGTGATGCTGCCCGGCCGGG
GGCGCAATTACCCGCTCCCACCGAAGAGAGCGCTCCTGCAACAAGCATCG
CGGGACAAAGCGTAGACGGCGCCGCCGCCGCTGCCTCCGCCGCCGCAGCA
GGGGGAGAGCAGCAGCAGCAACAGCAGCCCGCCCTCAGCCCCCGCTTCCT
GGGCATATTCTCGCGCGGAAGCAGCAGCGGCTCGGCCGGCAGCAGCAGCG
GGAAGGGAAAGGAAGACGGCGGCGGTGGCGGTGGCAAGGCGGGTTCTTCC
GCAGGAACCAGCGGTACCCCTCCGGCGGCAGGGACGGTAGCAGCAGCAGC
AGCAGCCTCGACGGGGGCGGGGGGAGCACCGGCAGCAGGAGGGGCCGTGG
TAGACGTTGCGCCACCGGGCCCCGACGCCGGAGGCGTCGGCGTCAAGCCC
CCCGCCGCGCCCGAGGAAGCACCGTCCTTCGGGGGCGGGGAAGGGCCGCT
GCAGCAACCACGGCAACCCTTAACGGACAGGGCGTCAGCAGCAGAGGGAG
CTGGGCTGGGAGCGCAAGCTGCTGGTGCTACAGCGGCGGGGGCGGAAGCG
GCGGCGGCGGCGGCGGCCGGGGCTGGGAGG
back to top