mRNA_Ecto-sp9_F_contig1012.162.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1012.162.1
Unique NamemRNA_Ecto-sp9_F_contig1012.162.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1012.162.1 vs.
Match: DUF547 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 5.320e-32
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 AGSADGEPGSTVVVIDVPDGGGADIGDEIALPLLTDRDPSPRGRQMSASRWASNDDASDGEMEDRRARRE 210
            AGSAD EPGSTV VIDVPDGG ADIGDEIALPLLTDRDPSPRGRQMSASRWASNDDASDGEMEDRRARRE
Sbjct:  783 AGSADWEPGSTVAVIDVPDGGDADIGDEIALPLLTDRDPSPRGRQMSASRWASNDDASDGEMEDRRARRE 852
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BLAST of mRNA_Ecto-sp9_F_contig1012.162.1 vs.
Match: DUF547 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.170e-25
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:   19 EPGSTVVVIDVPDGGGADIGDEIALPLLTDRDPSPRGRQMSASRWASNDDASDGEMEDRRARRE 210
            EPGST V IDVPDGG ADIGDEIALPLLTDRDPSPRGRQMSA+RWASNDDASDGEMEDRRARRE
Sbjct:  680 EPGSTGV-IDVPDGG-ADIGDEIALPLLTDRDPSPRGRQMSATRWASNDDASDGEMEDRRARRE 741
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1012.162.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DUF5475.320e-3295.71domain-containing protein n=1 Tax=Ectocarpus silic... [more]
DUF5472.170e-2593.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1012contigEcto-sp9_F_contig1012:25115..25439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF547
Ec32 orthologEc-05_003020.1
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.6630194-CDS-Ecto-sp9_F_contig1012:25114..254381622928206.6630194-CDS-Ecto-sp9_F_contig1012:25114..25438Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1012 25115..25438 +
1692277794.8701074-CDS-Ecto-sp9_F_contig1012:25114..254381692277794.8701074-CDS-Ecto-sp9_F_contig1012:25114..25438Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1012 25115..25438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1012.162.1prot_Ecto-sp9_F_contig1012.162.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1012 25115..25438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1012.162.1

>prot_Ecto-sp9_F_contig1012.162.1 ID=prot_Ecto-sp9_F_contig1012.162.1|Name=mRNA_Ecto-sp9_F_contig1012.162.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp
AGSADGEPGSTVVVIDVPDGGGADIGDEIALPLLTDRDPSPRGRQMSASR
WASNDDASDGEMEDRRARRERRRELKGAGAAGAGAGAGAGAGAGAGAASS
AAGVDRAR
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mRNA from alignment at Ecto-sp9_F_contig1012:25115..25439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1012.162.1 ID=mRNA_Ecto-sp9_F_contig1012.162.1|Name=mRNA_Ecto-sp9_F_contig1012.162.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1012:25115..25439+ (Ectocarpus species9 EcSCA_722f female)
GCGGGATCAGCAGACGGGGAGCCGGGGAGCACCGTCGTCGTCATTGACGT
CCCCGACGGGGGGGGCGCGGACATAGGGGACGAGATCGCCCTCCCCCTGC
TGACGGACAGGGACCCGAGCCCGAGGGGGAGGCAGATGTCGGCGTCCCGC
TGGGCCAGCAACGACGACGCTTCGGACGGCGAGATGGAGGACCGCAGGGC
CAGGCGCGAGAGGAGGAGGGAGCTCAAGGGGGCCGGCGCTGCTGGTGCTG
GTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTTCTTCT
GCAGCAGGTGTTGACAGGGCCCGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1012:25115..25439+

>mRNA_Ecto-sp9_F_contig1012.162.1 ID=mRNA_Ecto-sp9_F_contig1012.162.1|Name=mRNA_Ecto-sp9_F_contig1012.162.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1012:25115..25439+ (Ectocarpus species9 EcSCA_722f female)
GCGGGATCAGCAGACGGGGAGCCGGGGAGCACCGTCGTCGTCATTGACGT
CCCCGACGGGGGGGGCGCGGACATAGGGGACGAGATCGCCCTCCCCCTGC
TGACGGACAGGGACCCGAGCCCGAGGGGGAGGCAGATGTCGGCGTCCCGC
TGGGCCAGCAACGACGACGCTTCGGACGGCGAGATGGAGGACCGCAGGGC
CAGGCGCGAGAGGAGGAGGGAGCTCAAGGGGGCCGGCGCTGCTGGTGCTG
GTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTTCTTCT
GCAGCAGGTGTTGACAGGGCCCGGGCGGGATCAGCAGACGGGGAGCCGGG
GAGCACCGTCGTCGTCATTGACGTCCCCGACGGGGGGGGCGCGGACATAG
GGGACGAGATCGCCCTCCCCCTGCTGACGGACAGGGACCCGAGCCCGAGG
GGGAGGCAGATGTCGGCGTCCCGCTGGGCCAGCAACGACGACGCTTCGGA
CGGCGAGATGGAGGACCGCAGGGCCAGGCGCGAGAGGAGGAGGGAGCTCA
AGGGGGCCGGCGCTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGT
GCTGGTGCTGGTGCTGCTTCTTCTGCAGCAGGTGTTGACAGGGCCCGG
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