mRNA_Ecto-sp9_F_contig10112.154.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10112.154.1
Unique NamemRNA_Ecto-sp9_F_contig10112.154.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10112.154.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.620e-11
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:   88 QGAAAGARGGSPTRRLSARARLALLHRAMGMISGMGGEE 204
            QGAAAGARGGSPTRRLSARARLALLHRAMGMISGMG EE
Sbjct:  710 QGAAAGARGGSPTRRLSARARLALLHRAMGMISGMGDEE 748
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BLAST of mRNA_Ecto-sp9_F_contig10112.154.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.850e-9
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:   85 RGGSPTRRLSARARLALLHRAMGMISGMGGEEE 183
            RGGSPTRRLSARARLALLHRAMGMISGMGGEEE
Sbjct:  686 RGGSPTRRLSARARLALLHRAMGMISGMGGEEE 718
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10112.154.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.620e-1197.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.850e-9100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10112contigEcto-sp9_F_contig10112:2060..2368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.9429936-CDS-Ecto-sp9_F_contig10112:2059..23681622928205.9429936-CDS-Ecto-sp9_F_contig10112:2059..2368Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10112 2060..2368 +
1692277794.5301585-CDS-Ecto-sp9_F_contig10112:2059..23681692277794.5301585-CDS-Ecto-sp9_F_contig10112:2059..2368Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10112 2060..2368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10112.154.1prot_Ecto-sp9_F_contig10112.154.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10112 2060..2368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10112.154.1

>prot_Ecto-sp9_F_contig10112.154.1 ID=prot_Ecto-sp9_F_contig10112.154.1|Name=mRNA_Ecto-sp9_F_contig10112.154.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
LLFPIVDVFAVLAAPGPFILALFLVLLVFLLATHARDHPHGSVEQRQARP
CAQPSRRTTSSRPRSRSLLPRHINAQSGAPNKSVVGKQTMSALQGAAALF
NM*
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mRNA from alignment at Ecto-sp9_F_contig10112:2060..2368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10112.154.1 ID=mRNA_Ecto-sp9_F_contig10112.154.1|Name=mRNA_Ecto-sp9_F_contig10112.154.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10112:2060..2368+ (Ectocarpus species9 EcSCA_722f female)
CTCCTCTTCCCCATAGTCGACGTCTTCGCTGTCCTGGCTGCTCCCGGCCC
CTTCATCCTCGCTCTCTTCCTCGTCCTCCTCGTCTTCCTCCTCGCCACCC
ATGCCCGAGATCATCCCCATGGCTCGGTGGAGCAACGCCAGGCGCGCCCG
TGCGCTCAGCCTTCTCGTCGGACTACCTCCTCTCGCCCCCGCAGCCGCTC
CCTGCTGCCGCGGCACATAAACGCGCAGTCGGGGGCCCCGAACAAGTCCG
TGGTAGGGAAGCAGACAATGTCCGCCTTACAAGGGGCAGCCGCCTTGTTC
AACATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10112:2060..2368+

>mRNA_Ecto-sp9_F_contig10112.154.1 ID=mRNA_Ecto-sp9_F_contig10112.154.1|Name=mRNA_Ecto-sp9_F_contig10112.154.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10112:2060..2368+ (Ectocarpus species9 EcSCA_722f female)
CTCCTCTTCCCCATAGTCGACGTCTTCGCTGTCCTGGCTGCTCCCGGCCC
CTTCATCCTCGCTCTCTTCCTCGTCCTCCTCGTCTTCCTCCTCGCCACCC
ATGCCCGAGATCATCCCCATGGCTCGGTGGAGCAACGCCAGGCGCGCCCG
TGCGCTCAGCCTTCTCGTCGGACTACCTCCTCTCGCCCCCGCAGCCGCTC
CCTGCTGCCGCGGCACATAAACGCGCAGTCGGGGGCCCCGAACAAGTCCG
TGGTAGGGAAGCAGACAATGTCCGCCTTACAAGGGGCAGCCGCCTTGTTC
AACATGTAACTCCTCTTCCCCATAGTCGACGTCTTCGCTGTCCTGGCTGC
TCCCGGCCCCTTCATCCTCGCTCTCTTCCTCGTCCTCCTCGTCTTCCTCC
TCGCCACCCATGCCCGAGATCATCCCCATGGCTCGGTGGAGCAACGCCAG
GCGCGCCCGTGCGCTCAGCCTTCTCGTCGGACTACCTCCTCTCGCCCCCG
CAGCCGCTCCCTGCTGCCGCGGCACATAAACGCGCAGTCGGGGGCCCCGA
ACAAGTCCGTGGTAGGGAAGCAGACAATGTCCGCCTTACAAGGGGCAGCC
GCCTTGTTCAACATGTAA
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