mRNA_Ecto-sp9_F_contig10111.153.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10111.153.1
Unique NamemRNA_Ecto-sp9_F_contig10111.153.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10111.153.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH6_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 8.000e-75
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 VKSIKLMDRLQPSELLKVSLPFREVTLRNGDVVAKRGCGIVLHTSVEGREGNLWLKCRSNQDRGALVEALVPWFETNSPTRKELNVQQVPESPMARQLARLNAAGGSDVMRRKDTDCLIS 360
            VKSIKLMDRLQPSELLKVSLPFREVTLRNGDVVAKRGCGIVLHTSVEGREGNLWLKCRSNQDRGALVEALVPWFETNSPTRKELNVQQVPESPMARQLARLNAAGGSDVMRRKDTDCLIS
Sbjct:  401 VKSIKLMDRLQPSELLKVSLPFREVTLRNGDVVAKRGCGIVLHTSVEGREGNLWLKCRSNQDRGALVEALVPWFETNSPTRKELNVQQVPESPMARQLARLNAAGGSDVMRRKDTDCLIS 520
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10111.153.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.000e-75100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10111contigEcto-sp9_F_contig10111:3736..4685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004650.1
Exons2
Model size404
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10111.153.1prot_Ecto-sp9_F_contig10111.153.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10111 3777..4667 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.8748813-UTR-Ecto-sp9_F_contig10111:3735..37761622928205.8748813-UTR-Ecto-sp9_F_contig10111:3735..3776Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10111 3736..3776 -
1692277794.4873853-UTR-Ecto-sp9_F_contig10111:3735..37761692277794.4873853-UTR-Ecto-sp9_F_contig10111:3735..3776Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10111 3736..3776 -
1622928205.9091392-UTR-Ecto-sp9_F_contig10111:4667..46851622928205.9091392-UTR-Ecto-sp9_F_contig10111:4667..4685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10111 4668..4685 -
1692277794.5221941-UTR-Ecto-sp9_F_contig10111:4667..46851692277794.5221941-UTR-Ecto-sp9_F_contig10111:4667..4685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10111 4668..4685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.8873124-CDS-Ecto-sp9_F_contig10111:3776..38751622928205.8873124-CDS-Ecto-sp9_F_contig10111:3776..3875Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10111 3777..3875 -
1692277794.5027606-CDS-Ecto-sp9_F_contig10111:3776..38751692277794.5027606-CDS-Ecto-sp9_F_contig10111:3776..3875Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10111 3777..3875 -
1622928205.8996537-CDS-Ecto-sp9_F_contig10111:4421..46671622928205.8996537-CDS-Ecto-sp9_F_contig10111:4421..4667Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10111 4422..4667 -
1692277794.5145192-CDS-Ecto-sp9_F_contig10111:4421..46671692277794.5145192-CDS-Ecto-sp9_F_contig10111:4421..4667Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10111 4422..4667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10111.153.1

>prot_Ecto-sp9_F_contig10111.153.1 ID=prot_Ecto-sp9_F_contig10111.153.1|Name=mRNA_Ecto-sp9_F_contig10111.153.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
MDRLQPSELLKVSLPFREVTLRNGDVVAKRGCGIVLHTSVEGREGNLWLK
CRSNQDRGALVEALVPWFETNSPTRKELNVQQVPESPMARQLARLNAAGG
SDVMRRKDTDCLIS*
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mRNA from alignment at Ecto-sp9_F_contig10111:3736..4685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10111.153.1 ID=mRNA_Ecto-sp9_F_contig10111.153.1|Name=mRNA_Ecto-sp9_F_contig10111.153.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=950bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10111:3736..4685- (Ectocarpus species9 EcSCA_722f female)
GTGAAGAGCATAAAGCTCATGGATCGGCTGCAGCCCTCGGAGCTGCTGAA
GGTCTCGCTACCGTTCCGGGAAGTCACCCTGAGGAACGGCGACGTGGTGG
CGAAGCGGGGGTGCGGCATCGTGCTCCACACGAGCGTGGAAGGGCGGGAG
GGGAACCTGTGGCTCAAGTGCCGGTCGAATCAGGACCGGGGGGCCCTCGT
CGAAGCCCTGGTTCCCTGGTTCGAGACCAACTCGCCCACGAGAAAAGAGC
TGAACGTGCAGCAGGTATGCGACAAGGCTAAACGTTTCTTTTGTCCCTCC
GTGTAGCCGGTGGGGAGAGGGCGGCAGGAGGCGAGTTTGTTTTTGGTGTG
ACCTGTCTGACCGTTGTGATGCATGCCCATCGAGATGTATTGGCTGGAGA
AATGCGCCGGATATAAGTGTATCGTTTTCGGTTACGAGACCAGCATCCCG
TGGGGTATCTATACTCTCTCGGGAAAACTCTGTGATTCCCAACAGCCTTT
GGGTGCGTGTGTGTGTGTGTGTGTGCGAACAGTGGGCTTTGCCGTCCCCG
GCTTGTCGCCAACAAAGAGTCAAGGATAAAGGGACTCCGTGTGATGGAAA
AATGCACCGCACGGCTGGAGCGGGCCACATGCCCGCAATGTTCTTTAAAG
CTCTCTGTCACACAGCGTACGTCGGATGTACCCGCACGGCCCCCAAGACC
TGCCCCAACCCGGGCGCCCTGCTGCTGCGCGAGTTATCCCTATCCACGCG
GCCATCCCGTATTTTCGACTTTGTTTGCTTTTCGTGACCCTTTTTTTGTT
ATTTACTCAGGTGCCGGAAAGTCCAATGGCGCGGCAACTGGCCCGACTCA
ACGCCGCGGGAGGTAGCGATGTGATGCGGCGAAAGGATACAGATTGTTTA
ATATCGTGAGAAATAACATTGTCATCTCGTCTGAAAGCGAGAGCGCCAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10111:3736..4685-

>mRNA_Ecto-sp9_F_contig10111.153.1 ID=mRNA_Ecto-sp9_F_contig10111.153.1|Name=mRNA_Ecto-sp9_F_contig10111.153.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10111:3736..4685- (Ectocarpus species9 EcSCA_722f female)
ATGGATCGGCTGCAGCCCTCGGAGCTGCTGAAGGTCTCGCTACCGTTCCG
GGAAGTCACCCTGAGGAACGGCGACGTGGTGGCGAAGCGGGGGTGCGGCA
TCGTGCTCCACACGAGCGTGGAAGGGCGGGAGGGGAACCTGTGGCTCAAG
TGCCGGTCGAATCAGGACCGGGGGGCCCTCGTCGAAGCCCTGGTTCCCTG
GTTCGAGACCAACTCGCCCACGAGAAAAGAGCTGAACGTGCAGCAGATGG
ATCGGCTGCAGCCCTCGGAGCTGCTGAAGGTCTCGCTACCGTTCCGGGAA
GTCACCCTGAGGAACGGCGACGTGGTGGCGAAGCGGGGGTGCGGCATCGT
GCTCCACACGAGCGTGGAAGGGCGGGAGGGGAACCTGTGGCTCAAGTGCC
GGTCGAATCAGGACCGGGGGGCCCTCGTCGAAGCCCTGGTTCCCTGGTTC
GAGACCAACTCGCCCACGAGAAAAGAGCTGAACGTGCAGCAGGTGCCGGA
AAGTCCAATGGCGCGGCAACTGGCCCGACTCAACGCCGCGGGAGGTAGCG
ATGTGATGCGGCGAAAGGATACAGATTGTTTAATATCGTGAGTGCCGGAA
AGTCCAATGGCGCGGCAACTGGCCCGACTCAACGCCGCGGGAGGTAGCGA
TGTGATGCGGCGAAAGGATACAGATTGTTTAATATCGTGA
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