mRNA_Ecto-sp9_F_contig10106.143.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: HSF_DOMAIN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S6_9PHAE) HSP 1 Score: 239 bits (611), Expect = 1.560e-73 Identity = 143/160 (89.38%), Postives = 147/160 (91.88%), Query Frame = 1
Query: 1 APASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLSLIRRKAHSTSASXXXXXXXXXXXXXXXXXXXXXXXXSIHNSAVPSAGIRHDDSHSVAAQETKGSV 480
APASFLDKLWNILNEPHLSKHITWN+DGDGI++N+PAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLL LIRRK HS SAS XXXXXXXXXXXXXXXXXXXXXX S PSAGIRH DSHSV AQETKGSV
Sbjct: 80 APASFLDKLWNILNEPHLSKHITWNKDGDGILINYPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLGLIRRKGHSMSASNXXXXXXXXXXXXXXXXXXXXXXGS------PSAGIRHHDSHSVTAQETKGSV 233
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Heat (Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT89_ECTSI) HSP 1 Score: 217 bits (553), Expect = 4.130e-65 Identity = 101/107 (94.39%), Postives = 105/107 (98.13%), Query Frame = 1
Query: 1 APASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLSLIRRKAHSTSAS 321
APASFL+KLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDE+SCEF+HQNFRKGQRHLL LIRRKAHSTS +
Sbjct: 80 APASFLNKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEESCEFQHQNFRKGQRHLLGLIRRKAHSTSVA 186
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Hypothetical (protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G5V1_9STRA) HSP 1 Score: 108 bits (271), Expect = 6.070e-25 Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 4 PASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLSLIRRKAHSTSA 318
PA+FL+KL++IL + S+HI W+ +G I++ FAK+VLPK++KH+N+QSFVRQLN+Y F KTRHD + EF+ NF++G+R++L I+RK TSA
Sbjct: 93 PAAFLEKLYDILEDTIYSEHICWSMEGQSILIKKVDSFAKSVLPKFFKHSNFQSFVRQLNMYAFSKTRHDPNW----REFRQPNFQRGKRNMLKFIKRKTSDTSA 193
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Winged (helix DNA-binding domain-containing protein (Fragment) n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V749_9BASI) HSP 1 Score: 101 bits (251), Expect = 6.090e-25 Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 10 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDS----CEFKHQNFRKGQRHLLSLIRRK 300
SF+ KL+++L + + + I W G V +PA+FAK VLP ++KH+N+QSFVRQLN+YGFHK H G + EFKH NFR+G+ HLLS I+RK
Sbjct: 1 SFVSKLYSMLEDDTIEEMIAWGPSGTTFSVANPAEFAKVVLPNWFKHSNWQSFVRQLNMYGFHKVNHTYQGTPEEEIQVWEFKHPNFRRGEVHLLSEIKRK 101
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Si:dkey-18a10.3 (n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1G7L3_CYPCA) HSP 1 Score: 100 bits (249), Expect = 3.650e-24 Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 10 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLSLIRRK 300
+F+ KLW ++ P I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D D EF+H+NF++ Q HLL LIRRK
Sbjct: 15 AFVSKLWALVEAPSTDNLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVDCVEFQHENFQRAQPHLLGLIRRK 117
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Si:dkey-18a10.3 (n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1UXT7_CYPCA) HSP 1 Score: 101 bits (252), Expect = 8.710e-24 Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 10 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLSLIRRK 300
+F+ KLW ++ P I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D D EF+H+NF+K Q HLL LIRRK
Sbjct: 9 AFVSKLWALVEAPSTDNLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLSKADSQVDCVEFQHENFQKAQPHLLGLIRRK 111
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Heat (shock transcription factor 2 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834EEH4_9CHIR) HSP 1 Score: 99.8 bits (247), Expect = 1.010e-23 Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 10 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDG-----DEDSCEFKHQNFRKGQRHLLSLIRRKAHST 312
+FL KLW ++ E H ++ ITW+Q+G +V +FAK +LPKY+KHNN SFVRQLN+YGF K H D G + EF+H F++GQ LL I+RK S+
Sbjct: 9 AFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSS 114
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Heat (shock factor 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LEZ8_LABRO) HSP 1 Score: 105 bits (261), Expect = 1.310e-23 Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 10 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLSLIRRK 300
+F+ KLW ++ P + I+W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D DG + EF+H+NFR+ Q HLL LIRRK
Sbjct: 9 AFVSKLWTLVEAPSTNNLISWSQDGGSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADGQVNCVEFQHENFRRAQPHLLGLIRRK 111
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Si:dkey-18a10.3 (n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2I2H2_CYPCA) HSP 1 Score: 101 bits (252), Expect = 1.420e-23 Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 10 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLSLIRRK 300
+F+ KLW ++ P I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D D EF+H+NF+K Q HLL LIRRK
Sbjct: 9 AFVSKLWALVEAPSTDNLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVDCVEFQHENFQKAQPHLLGLIRRK 111
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Match: Si:dkey-18a10.3 (n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NZZ5_SINGR) HSP 1 Score: 99.4 bits (246), Expect = 1.500e-23 Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 10 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLSLIRRK 300
+F+ KLW ++ P + I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D + EF+H+NF++ Q HLL LIRRK
Sbjct: 15 AFVSKLWTLVEAPSTNDLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVNCVEFQHENFQRAQPHLLGLIRRK 117 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10106.143.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10106.143.1 >prot_Ecto-sp9_F_contig10106.143.1 ID=prot_Ecto-sp9_F_contig10106.143.1|Name=mRNA_Ecto-sp9_F_contig10106.143.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=160bp APASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHback to top mRNA from alignment at Ecto-sp9_F_contig10106:1235..2939- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10106.143.1 ID=mRNA_Ecto-sp9_F_contig10106.143.1|Name=mRNA_Ecto-sp9_F_contig10106.143.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1705bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10106:1235..2939- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10106:1235..2939- >mRNA_Ecto-sp9_F_contig10106.143.1 ID=mRNA_Ecto-sp9_F_contig10106.143.1|Name=mRNA_Ecto-sp9_F_contig10106.143.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10106:1235..2939- (Ectocarpus species9 EcSCA_722f female)back to top |