mRNA_Ecto-sp9_F_contig1010.138.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1010.138.1
Unique NamemRNA_Ecto-sp9_F_contig1010.138.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1010.138.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 8.860e-16
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  199 MKPRLFPASTHDFSVLDY-----YPFFEYAILFVCFRRAGGRGYLADLCW 333
            MKPRLF  STHDFSVLDY     + FF YA  FVCFRRAGG+G LADLCW
Sbjct:    1 MKPRLFLTSTHDFSVLDYPSFLLFSFFAYANFFVCFRRAGGQGCLADLCW 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1010.138.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.860e-1672.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1010contigEcto-sp9_F_contig1010:20555..20890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size336
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928202.0367439-UTR-Ecto-sp9_F_contig1010:20554..207521622928202.0367439-UTR-Ecto-sp9_F_contig1010:20554..20752Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1010 20555..20752 +
1692277794.0139477-UTR-Ecto-sp9_F_contig1010:20554..207521692277794.0139477-UTR-Ecto-sp9_F_contig1010:20554..20752Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1010 20555..20752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928202.0463367-CDS-Ecto-sp9_F_contig1010:20752..208901622928202.0463367-CDS-Ecto-sp9_F_contig1010:20752..20890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 20753..20890 +
1692277794.021701-CDS-Ecto-sp9_F_contig1010:20752..208901692277794.021701-CDS-Ecto-sp9_F_contig1010:20752..20890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 20753..20890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1010.138.1prot_Ecto-sp9_F_contig1010.138.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1010 20753..20890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1010.138.1

>prot_Ecto-sp9_F_contig1010.138.1 ID=prot_Ecto-sp9_F_contig1010.138.1|Name=mRNA_Ecto-sp9_F_contig1010.138.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=46bp
MKPRLFPASTHDFSVLDYYPFFEYAILFVCFRRAGGRGYLADLCW*
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mRNA from alignment at Ecto-sp9_F_contig1010:20555..20890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1010.138.1 ID=mRNA_Ecto-sp9_F_contig1010.138.1|Name=mRNA_Ecto-sp9_F_contig1010.138.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1010:20555..20890+ (Ectocarpus species9 EcSCA_722f female)
CGTGGCAGCGGTTCCCTGATTGGAACGACGACAGCGGACGGACCCAGCGC
CGCGAAGTGCGGGAGAAGAAGCACCTGCTAGCCGCGTTCGGAACTGGAAC
TGCGCCTACGGGAGGGCAGGGGGGTGCGCTGTCTTGATATCGTTGGCTGC
GATGGTCGAGAGCAACGACGCTGGTCGACGGGGGGTCTTGGCCCGGCGAT
GAAACCGCGCTTGTTTCCTGCCAGCACCCACGACTTCTCGGTGCTGGATT
ACTATCCTTTTTTTGAGTACGCCATTTTGTTTGTTTGTTTTCGGCGGGCG
GGGGGGCGGGGTTACCTGGCTGACTTATGTTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1010:20555..20890+

>mRNA_Ecto-sp9_F_contig1010.138.1 ID=mRNA_Ecto-sp9_F_contig1010.138.1|Name=mRNA_Ecto-sp9_F_contig1010.138.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1010:20555..20890+ (Ectocarpus species9 EcSCA_722f female)
ATGAAACCGCGCTTGTTTCCTGCCAGCACCCACGACTTCTCGGTGCTGGA
TTACTATCCTTTTTTTGAGTACGCCATTTTGTTTGTTTGTTTTCGGCGGG
CGGGGGGGCGGGGTTACCTGGCTGACTTATGTTGGTGAATGAAACCGCGC
TTGTTTCCTGCCAGCACCCACGACTTCTCGGTGCTGGATTACTATCCTTT
TTTTGAGTACGCCATTTTGTTTGTTTGTTTTCGGCGGGCGGGGGGGCGGG
GTTACCTGGCTGACTTATGTTGGTGA
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