mRNA_Ecto-sp9_F_contig1010.136.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1010.136.1
Unique NamemRNA_Ecto-sp9_F_contig1010.136.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1010.136.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D8_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 1.520e-126
Identity = 177/193 (91.71%), Postives = 184/193 (95.34%), Query Frame = 3 
Query:  114 MPPTRPLSTPCRYGYNCTRPDCFYAHPKDMNKDRPKDERPLCTFGSXXXXXXXXNDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVRVAYNDWKRYRGISATGTPDGVPRNPQQIQLYPRTRRGERLLQDAQNRVGLRWSPTPYRPWKTLERMATHDQ---AREDH 683
            MPPTRPLSTPCRYGYNCTRPDCFYAHPKDM+KDRPKDERPLCTFGS XXXXXX NDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVR+AYNDW+RYRGIS TGTPDGVP NPQQIQLYPRTR+GERLLQD QNRVG+RWSPTPYRPWKTLERMATHDQ   + +DH
Sbjct:    1 MPPTRPLSTPCRYGYNCTRPDCFYAHPKDMHKDRPKDERPLCTFGSGXXXXXXHNDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVRLAYNDWQRYRGISTTGTPDGVPSNPQQIQLYPRTRKGERLLQDPQNRVGMRWSPTPYRPWKTLERMATHDQYWESNQDH 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1010.136.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.520e-12691.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1010contigEcto-sp9_F_contig1010:8850..14864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size689
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1010.136.1prot_Ecto-sp9_F_contig1010.136.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1010 8850..11866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928201.8726761-CDS-Ecto-sp9_F_contig1010:8849..90621622928201.8726761-CDS-Ecto-sp9_F_contig1010:8849..9062Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 8850..9062 -
1692277793.9039555-CDS-Ecto-sp9_F_contig1010:8849..90621692277793.9039555-CDS-Ecto-sp9_F_contig1010:8849..9062Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 8850..9062 -
1622928201.8837955-CDS-Ecto-sp9_F_contig1010:9694..99041622928201.8837955-CDS-Ecto-sp9_F_contig1010:9694..9904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 9695..9904 -
1692277793.9151638-CDS-Ecto-sp9_F_contig1010:9694..99041692277793.9151638-CDS-Ecto-sp9_F_contig1010:9694..9904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 9695..9904 -
1622928201.893774-CDS-Ecto-sp9_F_contig1010:11713..118661622928201.893774-CDS-Ecto-sp9_F_contig1010:11713..11866Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 11714..11866 -
1692277793.924982-CDS-Ecto-sp9_F_contig1010:11713..118661692277793.924982-CDS-Ecto-sp9_F_contig1010:11713..11866Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 11714..11866 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928201.9043307-UTR-Ecto-sp9_F_contig1010:11866..119271622928201.9043307-UTR-Ecto-sp9_F_contig1010:11866..11927Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1010 11867..11927 -
1692277793.9339757-UTR-Ecto-sp9_F_contig1010:11866..119271692277793.9339757-UTR-Ecto-sp9_F_contig1010:11866..11927Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1010 11867..11927 -
1622928201.9165068-UTR-Ecto-sp9_F_contig1010:14812..148641622928201.9165068-UTR-Ecto-sp9_F_contig1010:14812..14864Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1010 14813..14864 -
1692277793.9507277-UTR-Ecto-sp9_F_contig1010:14812..148641692277793.9507277-UTR-Ecto-sp9_F_contig1010:14812..14864Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1010 14813..14864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1010.136.1

>prot_Ecto-sp9_F_contig1010.136.1 ID=prot_Ecto-sp9_F_contig1010.136.1|Name=mRNA_Ecto-sp9_F_contig1010.136.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=192bp
MPPTRPLSTPCRYGYNCTRPDCFYAHPKDMNKDRPKDERPLCTFGSGCFR
KVCHNDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPND
GKDRCDFVAAVPVRVAYNDWKRYRGISATGTPDGVPRNPQQIQLYPRTRR
GERLLQDAQNRVGLRWSPTPYRPWKTLERMATHDQAREDHG*
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mRNA from alignment at Ecto-sp9_F_contig1010:8850..14864-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1010.136.1 ID=mRNA_Ecto-sp9_F_contig1010.136.1|Name=mRNA_Ecto-sp9_F_contig1010.136.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6015bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1010:8850..14864- (Ectocarpus species9 EcSCA_722f female)
CTTCACAGGAGGGGAAAGACTTTTGCGTGGTGTCCCGCGGAGGCGTCTAG
AGGTACGATGCCAGTGTTTGTCTCAGTACAAGGGGGGGAGAAGCAAATGA
AATGGCAACCTCATCGACCACTGGCAGCCAGAAATATACTCCGGAAGTAC
ATACGACTTGATCGATCACACATGAAAGAAAGCTGGGAGAAGAGTAGAGG
GCCACTGCGCCCTGTCCGCAACAAAAAGACTCGTGCCGTGGCGCTCCAGG
CCAGTCCACAGGGACAGCTCGATGGAAAATTTCGAAAAAGGAGGAGTGAA
GATCATGATTTTTGCGCACCTGGTCTAGTCTATAACCCTGTAATCAAGAT
CCTCTACAAATTCTGCTGTTGTGAGCGTGCATGTGCAGTAGAAGTTTCCG
TCTTCACGTTTTCGTTGTATGTATCTGCTACGCTGTGGCACAGGTACAGC
AGGGAGCGGGAGACCGGCGGGCAAAAACCGTGCATATTGCTGGATCTTAC
TCTCCGCGACATAGTAGTAGTGTACAGGAACCCGCTGTGTAGAATGTGTG
CATGGCACATGGCTATCACAAGGGATAAAAACAAGAAAATAATTCGTTCC
CGCATGGTAAAATGCGGATGCACGCGAACCAACACTGGTTGCCACCTAAC
AGCTACAACAGCTACAGCAGTACTACACACACACAGCAGTACTACACACA
CACAGCAGCAACCGACCTTTTTGCTCGAACCGCTTTGTTTACGATGATGA
CTCGCCAATGCCATCCATTCGTATGCATGTGACAGAAATATGACACAATG
GGTCTATCACCTTATTGTAGACTACCGCATGAACACGCAAAAGAGGTCCC
AGTAATCTCTTTTCCATACCCACTCCGAACCCCAACCCCAACTCTTCGGC
ATACGTCTGCTGCGAGGTGCCCGGCGCCGTGTACGTACGGCGGATACCGG
CGTTGTCGCAGAAGGCCATGAAGTCGCGGCTGATGAACTCCCCCCCCTTG
TCCATCCGGAAAGATCGAGCGAGCGCGGAGGGATTTAGATCCCCCGGAAG
TGGCACCGGACTTGCCACACTGTTACGCGAGTGACTTGAGAGTACCAAAG
ACGTATTGGGATGCAGTGAATTCACAGTATGGACACTTGTGGAGGGATAA
TCGACCGAGCTCTGAGGGATTTAGATCCCCCGGAAGTGGCACCCGACTTG
CCACACTGTTATGTGAGTGACTTGAGAGTACCAAAGACGTACAGGGATGC
AGTGAACTCACAGCAGTATGGTGTAGTATGATGTATGATGTCCCTCCACA
AGTGTCCATACTGTGAGTTCACTGCATCCCTGTACGTCTTTGGTACTCTC
AAGTCACTCACATAACAGTGTGGCAAGTCGGGTGCCACTTCCGGGGGATC
TAAATCCCTCAGAGCTCGGTCGATGTCGTCGCGGGAGGCAATCAAGGTGG
CGCACGCAAATGGGACTTCTTCACGCAGTCCTTCTGTTTTTATGCCCCCC
CGCTCTCGCCCCCCCGGCTCCGCTCCTCCACGTCCACCGGCTGAACTCAG
AATCTCCCTTCGCCCTCTGAGAGTCGACAGGAGCGTTGCCTTGTGACGCT
CCCGCCCACCGCCGCTCCCGCCAGGTGACGTCCTTCCATGGGAACATACC
GTACCATCCACTTTGGCATTGTTAGCATACAAGTAATCTACATCAACGCA
GCCGAGCCGAGAAGAGTCGTTCACCGCTGCACTATCTTGGAGGCATCATG
TGCTACACCATCTCCGTAGACCACGCTTACATTTCAAAGTCAGGTGTATC
GAACTTGCCGCTGCCTACACCCATGCATCGGCTTGCGCCAGCTTCACGGC
GCAGATTTCAAGTGTTTCCGAGATCGGAACGGATGTCTTAAGCAAAAATT
AGGTACATACCACCAATTCTGGTGGCTAGACCAAATTTCGGTGTATGTAT
CTACTAGTCTATCTGACGGGCACGTGGTGCTGGCAAATTGCATCAGCGTA
TGCATATTAGTTTCACCATAAACGATAAAAATCAAAGCAAGCATTTGCAG
TAGGAAGGCGGAAAAAACATCTCCTGCGTGACCTCCTCCTCTGTGACCCA
GGCTGGTGCGTCAAGAATTAGCTGTACCCAAAGGTGTGTGGACCCGTGCA
GAATGAATGGATCAATGAGCGCGGGGCCAGTCCACACCCGATATTGGATT
GACTCGGGCCCTGGATCTTGTGTCGGAAGTGCCCACAGCTTGTCAAGGCT
TACTGCAATATTCCAGTGCTTAAGCCGGAACAAGCAAACGCTATTTAGGA
TAGTTTCAGATCGGCGCGTTGCGTCAGAGAGAGAGAGTGTTGATTCCAAA
GGGCGTGCATGAGAATAGAGAAGAAGAGATTTGTGCCACATGTGGCGGGT
TGAATTCTACACGTTTTGCGCACGGTGTGGTGTGTTGTACGAAGTACATA
CCACAAAACTATCGCGTCCAGCTCGGACACTCATAACATGTGCAGCGCAG
GGCGTGAGTAAACCAATATTTCCCGCCGCGAATCGTGCGTGCTTTCAGTC
CCCGAACGTCTCTCCTTTCTCGGCGAGGTAAGATTAAGGTTTCATGGCCA
GCCATCACCACCGTCAGATAGACAGATCAATGAACATTGGGTTCGTAGAG
AGTACAAATCTCGCCGAAGCACCTACGCTATAGACACACCTTTGGACGCG
GAAATCGGCGCCACCTCTCCGCATTATGAACGATGCTCCTCCTTTCTCTT
ACATTTGCCATGTGATGCAGTGTTAGGAGCTAAACAAGCGTTGCTGTCAG
AGTTACCCAAGAAGAATTCTGGTAGCTCTGGATCGGTCGGACACTACTCG
TTTCTTCGTGTGCAGTGTGCGTAACCCCCTCCCCCCCCCAACCCCAAACC
CTCCCTTCCACGACTCCTCTTGCCACGCACGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGCGCTGTAAACGCGGAGAGGTCTGCAACGACCAT
GCCGCCCACACGGCCCCTTTCGACACCCTGTCGGTACGGCTACAACTGCA
CCAGACCCGACTGTTTTTACGCCCACCCCAAGGACATGAACAAGGATCGG
CCAAAGGACGAGAGGCCGCTGTGCACCTTCGGCAGCGGATGCTTCAGGAA
GGTGATGATGGTAGAGATCGGGGGGAAACATCGCACTACATAGGTCGAGA
TCACGCTGTCGCGTGTGTTGATGTGGTAAAACCCCGTGCTTTGCTCCCGT
TCTTTTCAAGGCTCATATCGGTATGCCTTTTATGAGGTCTGCAATGTTTA
CGGCGGTATCCAGCCATCAAGGAAAATTTATTTGTGTTGGGGTTGTTAAC
CCTCCTAGTACTGGAAGCCCAAATGGGGACACTTCGGGGACACAGCACTC
AAATGCCTATTTACCGCACTGTAGTCACCCTAGGCTCCGCTGCGTGAAAC
GCACGTGAGAACCCTTGATCTATCATGCTTGGCTGAGGTGGTACGCTGTG
TGCTCTCCTGGGCCTCTGACTTGCTGTACACATCTCCCAACCCGCGTGCC
CCATAGGCCGTAAAACTGTACATCGCCTGGTACTGGAAGAATTTGCTCAC
TTGGCGTCAGTGAAAAGTGTCCCCACGTGTTTTTGGGACACATTTCACAC
TGAAGCCAAGTCACCCTTTGTCTGGCAAGAAGCTCAGATTCTTTGGAGGG
ACTGTAGCCCCTCGACCAATGGCTGACAAACATATTGTTCACTCTTTTTT
TTGCGGAGGGACTGGGTACTAGGAGGGTTAATTAGCCACCCTAGTGGTTT
TCGTACGGGGCCTTCCCCTCCCCTCCCTGCCTCTGACCGAGAAGTACCGC
ATGCGAAGCCCCAGGCAATCACATACACGATCAATCAGCAATTTTTGAGG
ACAAGACCCCTGTTTTTGGGATACAAGCGCAGAGGTCTCTACGGCGTTTG
GGTAGAATATCCAGAAGAAACTGCGGAAGTAGCTCCCAATCCAATGAAGG
ATAGAGCAAGGTAGGACCTCGGTAGCCCTTGGTAGTTCCTCCTTGCAGGC
CAACTTGGCCACCCTCTGCTCATTTCTGATAGCAAGGCACAGCAAGCGCT
GCTGCTGTCCCGCAAGATGTAAAAACAAGTGAGTCCGTCGTCACGGGCCT
TTCAGATTGTACAAGGCGATCTTCAACGTCAAATTGCCCAGAAAGGTTCC
TGAAGCTTCCCGCCAAAAGTGGCTCCTACCTCCGTCCGTCCAGACTCGTC
ACTTGCTGCAAGTAATCAGAAATGGTGCAGGAGGTCGGCGGGTAGTGGGT
GGTTTGTCAGGAGTGATGGAACTCACGAGTTTCTTTTTGAGGGGACGTTC
CCATCCACGGACCAAAAAAGTCAGTTTCTGACAACCCCAACACTTGGTTG
TCGCCGCACACGACAACAGCGGTATGTCGGGCAAAGCTTTATAGCGAATA
TGCTGCTTGTTGGCGGCCATCAGAAGCTGCAAGGAAAGGGCAACCGTAGC
GACCCTCTCAAAGTTTATTGAGGTTGAGATTGAGGGTGATGGACTCGGGA
TGGGCCAGCCTCGGATGGTAGCCTTCCTCGGAAGTCTGCAGCTAGGCAGG
GTACTCTTCCAGGCAAGCTGTCCCTTCCCTTTCGGATGTGGCTGCTGCTT
GTGTTTTCCGCACTCTTTGGCGAAACGGCTCTTTTTCGGCTCCCTCCCCT
CCTTGGCTTCCGCGCCCTGTTCCGGCTCTTCCCCCCCCCCCCCTGGCCAA
TTTTGCGGGGCCCCTGTTTTTGTTCTGCTGCACTTGCTGCTGCAGCTCCG
GGTGTTCCGCGTCCTCACAGGCTGTTGCGTTTTTAGACCTTCGTTCCGGC
CCTCCGTTTACACCCCTCTTCAGAACCTTCCCTTCTCTACCCCGCTTTTG
ACAACCAAACCAACACCGATGCGGCTTGTGAATGGGCTTGTGATGTTTTC
GCTCCAACAGGTATGCCACAACGACCACCCCAACGGACGCATTATGGACC
AGCTGAGAGCGAGCATTGACTATTGCTCGTCGTGGATGCTGGTGAGACCG
CACGAGCTGGTGCGGGTTTCCGCCGCTTTCCAGGCGGCGTTTCCAGCGCC
CAACGACGGCAAGGACCGGTGCGACTTCGTGGCTGCCGTTCCTGTGAGGG
TGGCGTACAACGACTGGAAGGTGAGAATTTTGTCGTTGTTGTTGTTGCTG
CTGGTTTGGTTATGGTCGATGCTGTTGCTGCTTTGGTTGGTTGTGGTCGT
CGTTGCTTTGGCTTGTAGTTGTTGGCTTTGGCTGTGGCTGCTGCTACTGT
TGCTGCTGCTGCTGTTGTTGTTTCAAAAGGATACTGGGAGGGAGGGAGAG
AAAAAAGAACTTTTTGTGCCGTCCTGCGCGAGAGAGGAGGTGACATGGTG
TGTTTGTGTTCGTCGGGATCATTCTCCGTTGCGCTGATTACCTTCGGCCA
AACATGGGCGCCAAAAGGAAACGCGGTGTATTCCTATCCCCAATAGAGAC
AGACGCCCCCGACTTGGAGGGCGGCAAAAAGGAGAGCTCTTCTTGTTTGA
TGTTAAGGCTTTGCCTTACGTACCAGAGCTGAAACGCTTGTTTTTGTGTC
GAAATACGGAATGAGGGGAAGGAAGAGGGGAAGAAACAGGTGCGAGAACG
GTCAGAGACGGAGGGCAGGGGAGCGGGAACGCTGGCAGCTGCAATATATC
CTGTGGAACCTTGCTTGTCCTTGGAGCACCCACCCCACCGCCATCTCTGT
GACCCCCCCCCCCCGCAAATGCTCTCAACACACACCCTCGGGCTATCTCC
AGCGATATCGGGGTATTTCAGCCACGGGCACCCCCGACGGGGTCCCCCGC
AATCCGCAACAGATCCAGCTCTACCCCCGGACCCGTAGGGGAGAACGCCT
CCTGCAGGACGCTCAGAACCGCGTCGGGCTGCGGTGGTCACCGACGCCGT
ACCGGCCGTGGAAGACGCTGGAGAGAATGGCGACCCACGACCAGGCGAGA
GAGGATCACGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1010:8850..14864-

>mRNA_Ecto-sp9_F_contig1010.136.1 ID=mRNA_Ecto-sp9_F_contig1010.136.1|Name=mRNA_Ecto-sp9_F_contig1010.136.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1152bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1010:8850..14864- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCCCACACGGCCCCTTTCGACACCCTGTCGGTACGGCTACAACTG
CACCAGACCCGACTGTTTTTACGCCCACCCCAAGGACATGAACAAGGATC
GGCCAAAGGACGAGAGGCCGCTGTGCACCTTCGGCAGCGGATGCTTCAGG
AAGATGCCGCCCACACGGCCCCTTTCGACACCCTGTCGGTACGGCTACAA
CTGCACCAGACCCGACTGTTTTTACGCCCACCCCAAGGACATGAACAAGG
ATCGGCCAAAGGACGAGAGGCCGCTGTGCACCTTCGGCAGCGGATGCTTC
AGGAAGGTATGCCACAACGACCACCCCAACGGACGCATTATGGACCAGCT
GAGAGCGAGCATTGACTATTGCTCGTCGTGGATGCTGGTGAGACCGCACG
AGCTGGTGCGGGTTTCCGCCGCTTTCCAGGCGGCGTTTCCAGCGCCCAAC
GACGGCAAGGACCGGTGCGACTTCGTGGCTGCCGTTCCTGTGAGGGTGGC
GTACAACGACTGGAAGGTATGCCACAACGACCACCCCAACGGACGCATTA
TGGACCAGCTGAGAGCGAGCATTGACTATTGCTCGTCGTGGATGCTGGTG
AGACCGCACGAGCTGGTGCGGGTTTCCGCCGCTTTCCAGGCGGCGTTTCC
AGCGCCCAACGACGGCAAGGACCGGTGCGACTTCGTGGCTGCCGTTCCTG
TGAGGGTGGCGTACAACGACTGGAAGCGATATCGGGGTATTTCAGCCACG
GGCACCCCCGACGGGGTCCCCCGCAATCCGCAACAGATCCAGCTCTACCC
CCGGACCCGTAGGGGAGAACGCCTCCTGCAGGACGCTCAGAACCGCGTCG
GGCTGCGGTGGTCACCGACGCCGTACCGGCCGTGGAAGACGCTGGAGAGA
ATGGCGACCCACGACCAGGCGAGAGAGGATCACGGTTGACGATATCGGGG
TATTTCAGCCACGGGCACCCCCGACGGGGTCCCCCGCAATCCGCAACAGA
TCCAGCTCTACCCCCGGACCCGTAGGGGAGAACGCCTCCTGCAGGACGCT
CAGAACCGCGTCGGGCTGCGGTGGTCACCGACGCCGTACCGGCCGTGGAA
GACGCTGGAGAGAATGGCGACCCACGACCAGGCGAGAGAGGATCACGGTT
GA
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