mRNA_Ecto-sp9_F_contig1010.135.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1010.135.1
Unique NamemRNA_Ecto-sp9_F_contig1010.135.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1010.135.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D8_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.420e-74
Identity = 156/316 (49.37%), Postives = 160/316 (50.63%), Query Frame = 1 
Query:    1 HWESNQNHYLLCAGYEAFPPGSGVYIELSVTDMMKVEDAGDGQRAGARVAREVLGLPGANGQKWFVFHVSRPDEAHEEAFNITIRAIVDTSKMPAIPRRPEPSRAPQLAQPPVPXXXXXTVRPGAVPAXXAPFNAHQXXXXXXXXXXQPFAAPANFAGPSPPXXXXXXXXXXXXXXXXXSNSPAEGQKQLPGSVSFNRGGPAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTVDELSDLLSSLNMAKFRSAFDRQNVDLKALKMMTAESELSGIAIPLGPRIKLMKELGIARGR 948
            +WESNQ+HYLLCAGYEAFPPGSGVYIELSVTDMMK EDAGDGQRAGARVAREVLGLPGANGQKWFVFHVSRPDEAHEEAFNITIRAIVDTSKMP +PR  EP RAPQLAQPPV                                             P PP                                                                                          +TV               RSAFDRQNVDLKALKMMTAESELSGIAIPLGPRIKLMKELGIARGR
Sbjct:  186 YWESNQDHYLLCAGYEAFPPGSGVYIELSVTDMMKAEDAGDGQRAGARVAREVLGLPGANGQKWFVFHVSRPDEAHEEAFNITIRAIVDTSKMPGVPRPHEPGRAPQLAQPPV--------------------------------------------LPPPP------------------------------------------------------------------------------------------STV---------------RSAFDRQNVDLKALKMMTAESELSGIAIPLGPRIKLMKELGIARGR 352
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BLAST of mRNA_Ecto-sp9_F_contig1010.135.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K610_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.990e-22
Identity = 148/182 (81.32%), Postives = 152/182 (83.52%), Query Frame = 1 
Query:  277 MPAIPRRPEPSRAPQLAQPPVPXXXXX---TVRPGAVPAXXAPFNAHQXXXXXXXXXXQPFAAPANFAGPSPPXXXXXXXXXXXXXXXXXSNSPAEGQKQLPGSVSFNRGGPAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTVDELSDLLSSLNMAKFR 813
            MPA+PRRPEPSRAPQL QPP+ XXXXX   T RPGAVPA  A FNAHQ XXXXXXXXX       NFAG SPP XXXXXXXXXXXXXXXX    AEGQ+QLPGSVSFN GGPA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +NTVDELSDLLSSLNMAKFR
Sbjct:    1 MPAVPRRPEPSRAPQLVQPPMXXXXXXXXSTGRPGAVPAPPASFNAHQQXXXXXXXXXXXXXXXTNFAGRSPPPXXXXXXXXXXXXXXXXXXXQAEGQEQLPGSVSFNHGGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ENTVDELSDLLSSLNMAKFR 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1010.135.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.420e-7449.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.990e-2281.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1010contigEcto-sp9_F_contig1010:4662..7963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSterile alpha motif/pointed domain
Ec32 orthologEc-04_003200.1
Exons5
Model size951
Cds size951
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1010.135.1prot_Ecto-sp9_F_contig1010.135.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1010 4662..7963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928201.732445-CDS-Ecto-sp9_F_contig1010:4661..47111622928201.732445-CDS-Ecto-sp9_F_contig1010:4661..4711Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 4662..4711 -
1692277793.8290143-CDS-Ecto-sp9_F_contig1010:4661..47111692277793.8290143-CDS-Ecto-sp9_F_contig1010:4661..4711Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 4662..4711 -
1622928201.7642624-CDS-Ecto-sp9_F_contig1010:5398..54871622928201.7642624-CDS-Ecto-sp9_F_contig1010:5398..5487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 5399..5487 -
1692277793.8395083-CDS-Ecto-sp9_F_contig1010:5398..54871692277793.8395083-CDS-Ecto-sp9_F_contig1010:5398..5487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 5399..5487 -
1622928201.7815382-CDS-Ecto-sp9_F_contig1010:5692..62281622928201.7815382-CDS-Ecto-sp9_F_contig1010:5692..6228Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 5693..6228 -
1692277793.8494933-CDS-Ecto-sp9_F_contig1010:5692..62281692277793.8494933-CDS-Ecto-sp9_F_contig1010:5692..6228Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 5693..6228 -
1622928201.8117855-CDS-Ecto-sp9_F_contig1010:7242..73621622928201.8117855-CDS-Ecto-sp9_F_contig1010:7242..7362Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 7243..7362 -
1692277793.8595693-CDS-Ecto-sp9_F_contig1010:7242..73621692277793.8595693-CDS-Ecto-sp9_F_contig1010:7242..7362Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 7243..7362 -
1622928201.8253522-CDS-Ecto-sp9_F_contig1010:7807..79631622928201.8253522-CDS-Ecto-sp9_F_contig1010:7807..7963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 7808..7963 -
1692277793.8838496-CDS-Ecto-sp9_F_contig1010:7807..79631692277793.8838496-CDS-Ecto-sp9_F_contig1010:7807..7963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1010 7808..7963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1010.135.1

>prot_Ecto-sp9_F_contig1010.135.1 ID=prot_Ecto-sp9_F_contig1010.135.1|Name=mRNA_Ecto-sp9_F_contig1010.135.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=317bp
HWESNQNHYLLCAGYEAFPPGSGVYIELSVTDMMKVEDAGDGQRAGARVA
REVLGLPGANGQKWFVFHVSRPDEAHEEAFNITIRAIVDTSKMPAIPRRP
EPSRAPQLAQPPVPPPPPPTVRPGAVPAPPAPFNAHQQQQQQQRGRGQPF
AAPANFAGPSPPPSSPSTSYAFSNATSSASNSPAEGQKQLPGSVSFNRGG
PAAKAAAAAALPAPPPPPQASSLPGGGGGGGGYLQQQQQQQQQQPQQQQP
PDNTVDELSDLLSSLNMAKFRSAFDRQNVDLKALKMMTAESELSGIAIPL
GPRIKLMKELGIARGR*
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mRNA from alignment at Ecto-sp9_F_contig1010:4662..7963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1010.135.1 ID=mRNA_Ecto-sp9_F_contig1010.135.1|Name=mRNA_Ecto-sp9_F_contig1010.135.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1010:4662..7963- (Ectocarpus species9 EcSCA_722f female)
CATTGGGAAAGCAACCAGAACCACTACCTCTTGTGCGCGGGGTACGAGGC
CTTCCCCCCCGGGAGCGGCGTGTACATCGAGTTGTCCGTGACCGACATGA
TGAAGGTCGAGGACGCCGGGGACGGGCAGCGGGCGGGCGCGCGGGTGGCG
CGGGAGGTGAGCGGCGAAGGGGGGCGAGGGACAGACAGACAAGGACAAGG
ACAAGGAAATTGTGGCGTGCGTGTTATTTGGTAGGCTTATGTTGTTTTGT
GTTGAACGCGATAACCGGCTGACTGTTGAAAACACGCCAGTCAGGCTTTC
AACGGGATAAGAACTGCGACCAGGCTTCCCTGTTGTTTTTCTTTGGTTAG
CATGGGCCGCGCTAACCGGTTGAAAAGGCGTCAAGTCTTAACGGCGGGAT
GGCACGTGCGAATCCCGCTTCTTTCTCGTAAGCGGGCTTCACCCGACAGG
CGCGTGTGGAGAAGGTCGGACGACACCTATTTAGTCTCCGGGTTCAGGGT
ACTTCCACAAGAAGTTTCACTCAATAAACAAACGTTCCTGCCTCTCGTGC
CTGTGCCGTTTGTGCTCATCATCCGATTGGGCGCGCATCACCCTGAACTA
GGTATTGGGGTTACCTGGCGCCAATGGCCAGAAGTGGTTCGTGTTTCACG
TGTCGCGGCCAGACGAGGCACACGAGGAGGCGTTCAACATAACCATCCGG
GCGATCGTGGACACGAGCAAGGTGAGTCAGTCGTTTCCTACAGCAGTCTC
AGTCTCGGTGGCGCAAGCCCTTCTTTGCGAGAGTACAACTGAACACACGA
GGTCAGGCCTCCCCTCCCCCACGGAGCGGTTGGCGAAGCTGAAGAATGAC
TACACGGCCGTGGTGGTGGTCCTCAAATATACCGTATTCCGTACCGCGGT
CCTGAGCAGCGCGGGTCCCAATACACCGCGGTAGACATCGCTTGTCACTG
GATTTGGCTTCCACACTGTTGTGTTTTCGTCCTATTTATTATGGCGACAG
TCCCCCATTTTCGTGGTGAGACGTGTACTACACTTTTCAGTGTATTTTTT
CGTACAACTACAACCATCCAGGGTCACACACACAGGAGGGGGTAAACACC
AGGGCCTGTTCTTCTTTTTTGTTTATTTTCGTGCTGAAAGCTATATATTC
CCCAGCACTCAATAGTGCGGTGTCCCGATATACCGCGGTTGTTTTTGCTT
GTCACAACACCGCGGTATGGTACTGGCCTTGTGCCTAAGTGCCAATGGGC
GCGGGGTCCACGTACTCCCGAAGCATACGTACTGACGAGGGGTGAAAGTA
GCTTATTAATACTGTAGAACCTTCTCCTCTACGGGACACACCGGCGCTGC
TGCTGTGCGATCAGTTGTTGTGGCGCTCCTCACCCCAAGGGCTGAAAGGC
GGCGCGCTTCTTTTTTGGCGCCAATTCTGCAAGGCGGAAGTCGTTCATGT
GCCGATTGTGCAGTCAGTCTGCTTCGTCTCACAACGAAATGCGATTTGTT
CCGGAAAGTTCCGGAAACCATGGCACCCAACAAACCCTGTGACTGTTTGG
CTAATTGCAACGACATGCAGCGTCAGGCCCGTACCCACGCTTCTGTATGT
GATGGAGAGAGCGCGCATCAAGTGATCCCCCCTTCCCTCTGTCCTCCCTT
CGGTACCCCCGCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCGTCTCT
GTCAAATATTTTGTCTGTGTGTGCCCTACCGACAGATGCCTGCGATACCC
CGCCGTCCCGAGCCTAGCCGAGCGCCGCAGCTGGCGCAGCCCCCGGTGCC
GCCGCCGCCGCCACCGACCGTTAGGCCCGGTGCTGTGCCTGCCCCGCCGG
CTCCGTTTAACGCGCACCAACAGCAACAGCAGCAACAGCGGGGGCGAGGG
CAGCCGTTTGCGGCGCCGGCGAATTTTGCCGGCCCCTCTCCGCCGCCCTC
TTCTCCGTCTACGTCGTACGCCTTCTCTAACGCAACCTCCTCCGCCTCCA
ACTCCCCGGCCGAAGGGCAGAAGCAGCTCCCGGGTTCCGTTAGCTTCAAC
CGCGGCGGACCCGCGGCGAAGGCGGCGGCAGCGGCGGCATTGCCGGCTCC
CCCGCCACCCCCGCAGGCGTCGTCCTTACCGGGCGGCGGCGGCGGCGGCG
GCGGTTATCTTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAG
CAACAACCACCGGACAATACGGTGGACGAGCTGAGCGACCTCCTGTCGAG
CCTGAACATGGCCAAATTTAGGTGAAGAGAGAGGGAGACAGAGAGAGAGA
GAGAGAGAGAGAGAGGGAGAGAGAGAGAGGTAGCCTCTGTTGGAAGGTTG
GAGAAGTGAGACCACATGTAAAAGTTCACGCAAAACTGCTGGTATTATAG
TTCGTAAGGCTTGCCTTCGTTTTTATCGTGAACGGGTTCTCTAATAGAAC
CGGTGTGGCCGAAAATCTCGATACAGGTCGGCGTTCGACAGGCAAAACGT
GGACTTAAAAGCTCTCAAGATGATGACCGCGGAGAGTGAGCTCTCTGGCA
TCGCCATCCCGCTGGGTGAGTTCCAGGAATATTCATAGTCGCGAGGGTTT
TCCGGAGGAGGAGAAAGGCGTTTCGAACGCGCGGCGGCCGCTTGGTCAAG
GCCGGGGGAGGGTAGAAGTCTTCGTGTGGTCGAGGAATGAATGCGGATGT
AAAGGAGAGGAAGAGATTGTCCATAAGATTGGAGAGGGAATGCGGATGAG
GCAAGGCAATTGTTGCCTCGGGATAGTGTACGTTTGGTGGCCGCGAGCAG
GTCAATGACGCCCTGGACCCTCCAGAATAGCATGCTGACACGGGGAATAC
ATGGACGTATTTTCTATGGAGAGTCCGGGAGAAGCGTGGTCGGTTTTTGC
TACTACCGGTATCTTGGGTCAACCTCCCCTCTCGAAGCCAGCAAATTACG
AGGTCACTCGTGAAGTGTTTTAGAGGCCAACAATATGTGAGAACACTGTG
AGAACACTCTGCCCCCCGCCCCCCTCCTCCCCAGTTGGTTTACCCCCTCC
TCTATCAGCAGTTGCCGAGTTAGTGCGGTAGTTTTTTTTTTTTACGGGAG
TGCGCTCGAAGGCCGCCCTTTCCATTCCCTGCCATCAAACCAAGTACGCA
CAAGATCGAGTTTATTCAGTTCGTTGCGCTGGAGCACTGCTGCGGTATAA
CTTTCTTCCTTTGTGCCCTTCTTCCCTTCCTTCTCCTCTCGCCTGCTGCC
AGGCCCGCGAATAAAGCTCATGAAGGAGCTTGGCATCGCAAGGGGTCGAT
GA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1010:4662..7963-

>mRNA_Ecto-sp9_F_contig1010.135.1 ID=mRNA_Ecto-sp9_F_contig1010.135.1|Name=mRNA_Ecto-sp9_F_contig1010.135.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1902bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1010:4662..7963- (Ectocarpus species9 EcSCA_722f female)
CATTGGGAAAGCAACCAGAACCACTACCTCTTGTGCGCGGGGTACGAGGC
CTTCCCCCCCGGGAGCGGCGTGTACATCGAGTTGTCCGTGACCGACATGA
TGAAGGTCGAGGACGCCGGGGACGGGCAGCGGGCGGGCGCGCGGGTGGCG
CGGGAGCATTGGGAAAGCAACCAGAACCACTACCTCTTGTGCGCGGGGTA
CGAGGCCTTCCCCCCCGGGAGCGGCGTGTACATCGAGTTGTCCGTGACCG
ACATGATGAAGGTCGAGGACGCCGGGGACGGGCAGCGGGCGGGCGCGCGG
GTGGCGCGGGAGGTATTGGGGTTACCTGGCGCCAATGGCCAGAAGTGGTT
CGTGTTTCACGTGTCGCGGCCAGACGAGGCACACGAGGAGGCGTTCAACA
TAACCATCCGGGCGATCGTGGACACGAGCAAGGTATTGGGGTTACCTGGC
GCCAATGGCCAGAAGTGGTTCGTGTTTCACGTGTCGCGGCCAGACGAGGC
ACACGAGGAGGCGTTCAACATAACCATCCGGGCGATCGTGGACACGAGCA
AGATGCCTGCGATACCCCGCCGTCCCGAGCCTAGCCGAGCGCCGCAGCTG
GCGCAGCCCCCGGTGCCGCCGCCGCCGCCACCGACCGTTAGGCCCGGTGC
TGTGCCTGCCCCGCCGGCTCCGTTTAACGCGCACCAACAGCAACAGCAGC
AACAGCGGGGGCGAGGGCAGCCGTTTGCGGCGCCGGCGAATTTTGCCGGC
CCCTCTCCGCCGCCCTCTTCTCCGTCTACGTCGTACGCCTTCTCTAACGC
AACCTCCTCCGCCTCCAACTCCCCGGCCGAAGGGCAGAAGCAGCTCCCGG
GTTCCGTTAGCTTCAACCGCGGCGGACCCGCGGCGAAGGCGGCGGCAGCG
GCGGCATTGCCGGCTCCCCCGCCACCCCCGCAGGCGTCGTCCTTACCGGG
CGGCGGCGGCGGCGGCGGCGGTTATCTTCAACAGCAGCAGCAGCAGCAGC
AGCAGCAGCCGCAACAGCAACAACCACCGGACAATACGGTGGACGAGCTG
AGCGACCTCCTGTCGAGCCTGAACATGGCCAAATTTAGATGCCTGCGATA
CCCCGCCGTCCCGAGCCTAGCCGAGCGCCGCAGCTGGCGCAGCCCCCGGT
GCCGCCGCCGCCGCCACCGACCGTTAGGCCCGGTGCTGTGCCTGCCCCGC
CGGCTCCGTTTAACGCGCACCAACAGCAACAGCAGCAACAGCGGGGGCGA
GGGCAGCCGTTTGCGGCGCCGGCGAATTTTGCCGGCCCCTCTCCGCCGCC
CTCTTCTCCGTCTACGTCGTACGCCTTCTCTAACGCAACCTCCTCCGCCT
CCAACTCCCCGGCCGAAGGGCAGAAGCAGCTCCCGGGTTCCGTTAGCTTC
AACCGCGGCGGACCCGCGGCGAAGGCGGCGGCAGCGGCGGCATTGCCGGC
TCCCCCGCCACCCCCGCAGGCGTCGTCCTTACCGGGCGGCGGCGGCGGCG
GCGGCGGTTATCTTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAA
CAGCAACAACCACCGGACAATACGGTGGACGAGCTGAGCGACCTCCTGTC
GAGCCTGAACATGGCCAAATTTAGGTCGGCGTTCGACAGGCAAAACGTGG
ACTTAAAAGCTCTCAAGATGATGACCGCGGAGAGTGAGCTCTCTGGCATC
GCCATCCCGCTGGGTCGGCGTTCGACAGGCAAAACGTGGACTTAAAAGCT
CTCAAGATGATGACCGCGGAGAGTGAGCTCTCTGGCATCGCCATCCCGCT
GGGCCCGCGAATAAAGCTCATGAAGGAGCTTGGCATCGCAAGGGGTCGAT
GAGCCCGCGAATAAAGCTCATGAAGGAGCTTGGCATCGCAAGGGGTCGAT
GA
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