mRNA_Ecto-sp9_F_contig10095.126.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10095.126.1
Unique NamemRNA_Ecto-sp9_F_contig10095.126.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10095.126.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.390e-43
Identity = 71/85 (83.53%), Postives = 73/85 (85.88%), Query Frame = 3 
Query:    3 VAMGYSVHMQRLLGHLTWWIFPLLMPGYTDFTNDGKDLRANVFISYFFVGLALTVGLMEVWLRHTSPSGKVLRAGQEPELSIKAS 257
            VAMGYSVHMQRLLGHLTWWIFPLLMPGYTD TNDG +LRA VF  YF  G+ LTVG MEVWLRHT PSGKVLRAGQEP LSIK S
Sbjct:  209 VAMGYSVHMQRLLGHLTWWIFPLLMPGYTDLTNDGMELRARVFALYFVAGVVLTVGPMEVWLRHTLPSGKVLRAGQEPGLSIKDS 293
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BLAST of mRNA_Ecto-sp9_F_contig10095.126.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX30_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 9.890e-41
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 3 
Query:    3 VAMGYSVHMQRLLGHLTWWIFPLLMPGYTDFTNDGKDLRANVFISYFFVGLALTVGLMEVWLRHTSPSGKVLRAG 227
            VAMGYSVHMQRLLGHLTWW+FPLLMPGYTDFTN GK+LRANVFISYFFVGLALTVG MEVWLRHTSPSGK +  G
Sbjct:  207 VAMGYSVHMQRLLGHLTWWMFPLLMPGYTDFTNGGKELRANVFISYFFVGLALTVGPMEVWLRHTSPSGKDVARG 281
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BLAST of mRNA_Ecto-sp9_F_contig10095.126.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.100e-25
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:    3 VAMGYSVHMQRLLGHLTWWIFPLLMPGYTDFTNDGKDLRANVFISYF 143
            VAMGYSVHMQRLLGHLTWWIFPLLMPGYTD T DGK+LRANVFIS F
Sbjct:    5 VAMGYSVHMQRLLGHLTWWIFPLLMPGYTDLTKDGKELRANVFISCF 51
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10095.126.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX31_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.630e-18
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:    3 VAMGYSVHMQRLLGHLTWWIFPLLMPG-YTDFTNDGKDLRANVFISYFFVGLALTVGLMEVWLRHTSPSGKVLRAGQEPE 239
            VAMGY+ H+QRLL  L+WW  PL+ P  YT+ + +G  LR +VF  YF V + L VGLME+WLRHT+ +   LR  ++ +
Sbjct:  177 VAMGYAAHVQRLLAALSWWAIPLVAPAKYTELSPEGALLRGDVFGGYFLVSIVLCVGLMEMWLRHTTTASGTLREERDQD 256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10095.126.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.390e-4383.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.890e-4189.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.100e-2591.49protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.630e-1848.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10095contigEcto-sp9_F_contig10095:2847..3671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size260
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10095.126.1prot_Ecto-sp9_F_contig10095.126.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10095 2847..3663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.7204473-CDS-Ecto-sp9_F_contig10095:2846..29681622928200.7204473-CDS-Ecto-sp9_F_contig10095:2846..2968Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10095 2847..2968 -
1692277793.1507132-CDS-Ecto-sp9_F_contig10095:2846..29681692277793.1507132-CDS-Ecto-sp9_F_contig10095:2846..2968Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10095 2847..2968 -
1622928200.737805-CDS-Ecto-sp9_F_contig10095:3533..36631622928200.737805-CDS-Ecto-sp9_F_contig10095:3533..3663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10095 3534..3663 -
1692277793.1583586-CDS-Ecto-sp9_F_contig10095:3533..36631692277793.1583586-CDS-Ecto-sp9_F_contig10095:3533..3663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10095 3534..3663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.761305-UTR-Ecto-sp9_F_contig10095:3663..36711622928200.761305-UTR-Ecto-sp9_F_contig10095:3663..3671Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10095 3664..3671 -
1692277793.1721666-UTR-Ecto-sp9_F_contig10095:3663..36711692277793.1721666-UTR-Ecto-sp9_F_contig10095:3663..3671Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10095 3664..3671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10095.126.1

>prot_Ecto-sp9_F_contig10095.126.1 ID=prot_Ecto-sp9_F_contig10095.126.1|Name=mRNA_Ecto-sp9_F_contig10095.126.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
MGYSVHMQRLLGHLTWWIFPLLMPGYTDFTNDGKDLRANVFISYFFVGLA
LTVGLMEVWLRHTSPSGKVLRAGQEPELSIKAS*
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mRNA from alignment at Ecto-sp9_F_contig10095:2847..3671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10095.126.1 ID=mRNA_Ecto-sp9_F_contig10095.126.1|Name=mRNA_Ecto-sp9_F_contig10095.126.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10095:2847..3671- (Ectocarpus species9 EcSCA_722f female)
ACGTGGCAATGGGATACTCGGTGCACATGCAGCGCCTTCTCGGCCACCTG
ACGTGGTGGATCTTCCCCTTGTTGATGCCCGGGTACACCGACTTCACGAA
CGACGGGAAGGATTTGCGTGCTAACGTGTTCATATCGTGTGAGTGCTTGG
AATGCGACTGGTGTGTAAATCTGAATGAGGTTGATTGGGGGAGGGCGGGG
GGGGACTCAGTTCTGTGTGGCGTGTTGCCCGTGGGCGGATGTTCCTCGAC
GTAGCGCGTGTAGGTGTGTTGGGTTCTCGTGAAACACGTGATGTTGAATC
AAATCGTTTTCAACGCATGTGGAACTCTTGAGAGCTTTCGCCGCAGTCAC
GAAGCGACGAGTAAGAACCATCTTGTGCTATGTAGACAGCAGTGCGAGCG
AAATGGATATTTGGAACGAAAACAAAAAGTGCAGGGTAGGAGCAAGTACA
TATGTATGGACCCCTGCAGGCTTTCTGGCCCCCTCTCTGGCGGAATACCG
CCGCCTCGAGCATTCTACTGACGATCAATGATGTCTCATCGCAAGCGTTT
CCCTCCCCGTATGGGCCACGCCGGGATGTTTATTACCCGCTCGAGAGATA
GGTGTCCCTTTCAAGTATTCCTAGCTGACGCGCCCCCGCCCGACGACCTG
CCCGCTGCCCCCCCCGCCCCCTCTATCGGCCCCTCTGCGAATGCACGAAA
CAGATTTTTTTGTGGGCCTTGCCCTGACGGTGGGGCTTATGGAGGTGTGG
CTGCGGCACACGTCGCCTTCCGGAAAAGTGTTGCGAGCGGGGCAAGAACC
AGAGCTCTCCATCAAGGCCTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10095:2847..3671-

>mRNA_Ecto-sp9_F_contig10095.126.1 ID=mRNA_Ecto-sp9_F_contig10095.126.1|Name=mRNA_Ecto-sp9_F_contig10095.126.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10095:2847..3671- (Ectocarpus species9 EcSCA_722f female)
ATGGGATACTCGGTGCACATGCAGCGCCTTCTCGGCCACCTGACGTGGTG
GATCTTCCCCTTGTTGATGCCCGGGTACACCGACTTCACGAACGACGGGA
AGGATTTGCGTGCTAACGTGTTCATATCGTATGGGATACTCGGTGCACAT
GCAGCGCCTTCTCGGCCACCTGACGTGGTGGATCTTCCCCTTGTTGATGC
CCGGGTACACCGACTTCACGAACGACGGGAAGGATTTGCGTGCTAACGTG
TTCATATCGTATTTTTTTGTGGGCCTTGCCCTGACGGTGGGGCTTATGGA
GGTGTGGCTGCGGCACACGTCGCCTTCCGGAAAAGTGTTGCGAGCGGGGC
AAGAACCAGAGCTCTCCATCAAGGCCTCGTGAATTTTTTTGTGGGCCTTG
CCCTGACGGTGGGGCTTATGGAGGTGTGGCTGCGGCACACGTCGCCTTCC
GGAAAAGTGTTGCGAGCGGGGCAAGAACCAGAGCTCTCCATCAAGGCCTC
GTGA
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