mRNA_Ecto-sp9_F_contig10077.115.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10077.115.1
Unique NamemRNA_Ecto-sp9_F_contig10077.115.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10077.115.1 vs.
Match: RING-Gid-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT28_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.230e-21
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:  133 QELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRE 273
            QELMGSLLWSGNLEASPYSHLLS ELWTRVKESVAVDASRVSGLSRE
Sbjct:   96 QELMGSLLWSGNLEASPYSHLLSLELWTRVKESVAVDASRVSGLSRE 142
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BLAST of mRNA_Ecto-sp9_F_contig10077.115.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.070e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:  133 QELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRE 273
            QELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASR+SGLSRE
Sbjct:  322 QELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRISGLSRE 368
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BLAST of mRNA_Ecto-sp9_F_contig10077.115.1 vs.
Match: Uncharacterized (protein n=6 Tax=Maleae TaxID=721813 RepID=A0A540NTC5_MALBA)

HSP 1 Score: 50.8 bits (120), Expect = 2.710e-5
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    4 SPTLLKSHDSN--DLRNSNRLHIPLHVSTTLGSTARHRLETILPCQELMGSLLWSGNLEASPYSHLLSQELWTRV 222
            S  LLK H     ++   NR     +  T L   A + +  I   Q+LMGSLLW+G LE SPYSHLLS  +W +V
Sbjct:  185 SDILLKLHSLQFVEIVKGNRERALQYSKTCLAPFASNYMAEI---QKLMGSLLWTGRLEYSPYSHLLSPAIWDKV 256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10077.115.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
RING-Gid-type4.230e-2197.87domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.070e-2197.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.710e-542.67protein n=6 Tax=Maleae TaxID=721813 RepID=A0A540NT... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10077contigEcto-sp9_F_contig10077:3665..3937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue8.8e-17
Seed eggNOG ortholog2880.D8LT28
Preferred nameRMND5A
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG5109@1,KOG2817@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size274
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928199.5286481-CDS-Ecto-sp9_F_contig10077:3664..39371622928199.5286481-CDS-Ecto-sp9_F_contig10077:3664..3937Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10077 3665..3937 +
1692277792.5165863-CDS-Ecto-sp9_F_contig10077:3664..39371692277792.5165863-CDS-Ecto-sp9_F_contig10077:3664..3937Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10077 3665..3937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10077.115.1prot_Ecto-sp9_F_contig10077.115.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10077 3665..3937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10077.115.1

>prot_Ecto-sp9_F_contig10077.115.1 ID=prot_Ecto-sp9_F_contig10077.115.1|Name=mRNA_Ecto-sp9_F_contig10077.115.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
PSPTLLKSHDSNDLRNSNRLHIPLHVSTTLGSTARHRLETILPCQELMGS
LLWSGNLEASPYSHLLSQELWTRVKESVAVDASRVSGLSRE
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mRNA from alignment at Ecto-sp9_F_contig10077:3665..3937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10077.115.1 ID=mRNA_Ecto-sp9_F_contig10077.115.1|Name=mRNA_Ecto-sp9_F_contig10077.115.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10077:3665..3937+ (Ectocarpus species9 EcSCA_722f female)
CCCTCTCCGACGCTGCTCAAGTCTCACGATAGCAACGACTTACGTAACTC
AAATCGCCTTCACATTCCCTTGCACGTATCCACGACGCTGGGTTCTACCG
CTCGCCACCGTTTGGAAACGATCTTACCCTGCCAGGAGCTCATGGGGAGC
CTCCTGTGGTCGGGAAACCTGGAGGCTTCGCCTTACAGCCACCTCCTCTC
CCAGGAGCTATGGACTCGCGTGAAGGAGTCGGTGGCGGTAGACGCCAGCC
GGGTGTCCGGGCTGTCGCGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10077:3665..3937+

>mRNA_Ecto-sp9_F_contig10077.115.1 ID=mRNA_Ecto-sp9_F_contig10077.115.1|Name=mRNA_Ecto-sp9_F_contig10077.115.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10077:3665..3937+ (Ectocarpus species9 EcSCA_722f female)
CCCTCTCCGACGCTGCTCAAGTCTCACGATAGCAACGACTTACGTAACTC
AAATCGCCTTCACATTCCCTTGCACGTATCCACGACGCTGGGTTCTACCG
CTCGCCACCGTTTGGAAACGATCTTACCCTGCCAGGAGCTCATGGGGAGC
CTCCTGTGGTCGGGAAACCTGGAGGCTTCGCCTTACAGCCACCTCCTCTC
CCAGGAGCTATGGACTCGCGTGAAGGAGTCGGTGGCGGTAGACGCCAGCC
GGGTGTCCGGGCTGTCGCGGGAGCCCTCTCCGACGCTGCTCAAGTCTCAC
GATAGCAACGACTTACGTAACTCAAATCGCCTTCACATTCCCTTGCACGT
ATCCACGACGCTGGGTTCTACCGCTCGCCACCGTTTGGAAACGATCTTAC
CCTGCCAGGAGCTCATGGGGAGCCTCCTGTGGTCGGGAAACCTGGAGGCT
TCGCCTTACAGCCACCTCCTCTCCCAGGAGCTATGGACTCGCGTGAAGGA
GTCGGTGGCGGTAGACGCCAGCCGGGTGTCCGGGCTGTCGCGGGAG
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