mRNA_Ecto-sp9_F_contig1007.111.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1007.111.1
Unique NamemRNA_Ecto-sp9_F_contig1007.111.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1007.111.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA6_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.310e-5
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 GHLDVLRWARNNGCPWDRWTWRRAASVGHLE 93
            GHL VL+WARNNGCPWD+ T  +AA  GHLE
Sbjct:   53 GHLGVLQWARNNGCPWDKETCSKAAQNGHLE 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1007.111.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.310e-570.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1007contigEcto-sp9_F_contig1007:17760..18490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size593
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1007.111.1prot_Ecto-sp9_F_contig1007.111.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1007 17889..18470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928199.1211-UTR-Ecto-sp9_F_contig1007:17759..178881622928199.1211-UTR-Ecto-sp9_F_contig1007:17759..17888Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1007 17760..17888 -
1692277792.244332-UTR-Ecto-sp9_F_contig1007:17759..178881692277792.244332-UTR-Ecto-sp9_F_contig1007:17759..17888Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1007 17760..17888 -
1622928199.1522915-UTR-Ecto-sp9_F_contig1007:18470..184901622928199.1522915-UTR-Ecto-sp9_F_contig1007:18470..18490Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1007 18471..18490 -
1692277792.2778122-UTR-Ecto-sp9_F_contig1007:18470..184901692277792.2778122-UTR-Ecto-sp9_F_contig1007:18470..18490Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1007 18471..18490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928199.1307278-CDS-Ecto-sp9_F_contig1007:17888..181721622928199.1307278-CDS-Ecto-sp9_F_contig1007:17888..18172Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1007 17889..18172 -
1692277792.2542174-CDS-Ecto-sp9_F_contig1007:17888..181721692277792.2542174-CDS-Ecto-sp9_F_contig1007:17888..18172Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1007 17889..18172 -
1622928199.142912-CDS-Ecto-sp9_F_contig1007:18310..184701622928199.142912-CDS-Ecto-sp9_F_contig1007:18310..18470Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1007 18311..18470 -
1692277792.270171-CDS-Ecto-sp9_F_contig1007:18310..184701692277792.270171-CDS-Ecto-sp9_F_contig1007:18310..18470Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1007 18311..18470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1007.111.1

>prot_Ecto-sp9_F_contig1007.111.1 ID=prot_Ecto-sp9_F_contig1007.111.1|Name=mRNA_Ecto-sp9_F_contig1007.111.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
MGEKQRMPVGSMDVASRGFGRASRRFNGRETTDAPGTKQLAAARLPSIIL
KPCWGHAGREATVVPGTRQRAPTWLLGGLEYFNGPETVVAPGTEGRTSKR
LWEDISNSCNGPEATDVRGTKKPAVARIGGHLEVLQWVRNNECPWNR*
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mRNA from alignment at Ecto-sp9_F_contig1007:17760..18490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1007.111.1 ID=mRNA_Ecto-sp9_F_contig1007.111.1|Name=mRNA_Ecto-sp9_F_contig1007.111.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=731bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1007:17760..18490- (Ectocarpus species9 EcSCA_722f female)
GGACATCTCGACGTCCTGCGATGGGCGAGAAACAACGGATGCCCGTGGGA
TCGATGGACGTGGCGTCGCGCGGCTTCGGTCGGGCATCTCGAAGGTTCAA
TGGGCGCGAGACAACGGATGCCCCTGGGACGAAGCAACTTGCAGCAGCGC
GGCTTCCGAGTATCATCTTGAAGCCTTGCTGTGCGCGAGAAACATCGGAT
GCCCTTCGGACGAAGCAATTTAGTAGTGCGGCTTCGGGGGGTCATCTTGA
AGTCTTGCCGTGGGTGGGAAACAACGGATGCCCCTGCAACTGATCATCGT
GCCGTCGCGCGGGTCTAGGGGGGCATGCTGGGCGAGAGGCAACGGTTGTC
CCTGGGACGAGGCAACGTGCTCCAACGTGGCTTCTGGGGGGCTTGGAGTA
CTTCAATGGGCCAGAAACAGTGGTTGCCCCTGGGACGGAGGGACGTACAT
CAAAGCGGCTCTGGGAGGACATCTCGAACTCCTGCAATGGGCCGGAAGCA
ACGGATGTCCGTGGGACGAAGAAACCTGCAGTAGCGCGGATCGGGGGGCA
CCTTGAAGTACTGCAATGGGTGAGAAACAACGAGTGCCCTTGGAACCGAT
AGACTTGCAATAACGCCGCGTCGGGGAGACATTTTGAAGTACTTGAATGG
GCGCGAAGAAATGGATGCCCCTGGGACGAGGCAGTATCCTCTAACGCGGC
CTCGGGGAGACATCTTGAAGTAATTCAATGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1007:17760..18490-

>mRNA_Ecto-sp9_F_contig1007.111.1 ID=mRNA_Ecto-sp9_F_contig1007.111.1|Name=mRNA_Ecto-sp9_F_contig1007.111.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1007:17760..18490- (Ectocarpus species9 EcSCA_722f female)
ATGGGCGAGAAACAACGGATGCCCGTGGGATCGATGGACGTGGCGTCGCG
CGGCTTCGGTCGGGCATCTCGAAGGTTCAATGGGCGCGAGACAACGGATG
CCCCTGGGACGAAGCAACTTGCAGCAGCGCGGCTTCCGAGTATCATCTTG
AAGCCTTGCTATGGGCGAGAAACAACGGATGCCCGTGGGATCGATGGACG
TGGCGTCGCGCGGCTTCGGTCGGGCATCTCGAAGGTTCAATGGGCGCGAG
ACAACGGATGCCCCTGGGACGAAGCAACTTGCAGCAGCGCGGCTTCCGAG
TATCATCTTGAAGCCTTGCTGGGGGCATGCTGGGCGAGAGGCAACGGTTG
TCCCTGGGACGAGGCAACGTGCTCCAACGTGGCTTCTGGGGGGCTTGGAG
TACTTCAATGGGCCAGAAACAGTGGTTGCCCCTGGGACGGAGGGACGTAC
ATCAAAGCGGCTCTGGGAGGACATCTCGAACTCCTGCAATGGGCCGGAAG
CAACGGATGTCCGTGGGACGAAGAAACCTGCAGTAGCGCGGATCGGGGGG
CACCTTGAAGTACTGCAATGGGTGAGAAACAACGAGTGCCCTTGGAACCG
ATAGGGGGGCATGCTGGGCGAGAGGCAACGGTTGTCCCTGGGACGAGGCA
ACGTGCTCCAACGTGGCTTCTGGGGGGCTTGGAGTACTTCAATGGGCCAG
AAACAGTGGTTGCCCCTGGGACGGAGGGACGTACATCAAAGCGGCTCTGG
GAGGACATCTCGAACTCCTGCAATGGGCCGGAAGCAACGGATGTCCGTGG
GACGAAGAAACCTGCAGTAGCGCGGATCGGGGGGCACCTTGAAGTACTGC
AATGGGTGAGAAACAACGAGTGCCCTTGGAACCGATAG
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