mRNA_Ecto-sp9_F_contig10069.109.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10069.109.1
Unique NamemRNA_Ecto-sp9_F_contig10069.109.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10069.109.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE1_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 2.670e-115
Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 3 
Query:    3 CGLGPNILTRPSEEVYNGVAQPATVAAIIEIDFGVPVADTLVGAFGHVSKGDVLFKRGLFAEALACYNQCIDTAGAFEGSTNALSVAKVKQSTAMRLLAKEGGRGSSRAAGTGSTAAAASVTLEEAEASAREAVELWPAHTAAWLNLADVLVDTGRVQEALETLAELKAQLPGAKFDASEKAAIIRNTQR 572
            CGLGPNILTRPSEEVYNGVAQPATVAAIIEIDFGVPVADTLVGAFGHVSKGDVLFKRGLFAEALACYNQCIDTAGAFEGSTNALSVAKVKQS+AMRLLAKEGGRGSSRAAGTGSTAAAASVTLEEAEASAREAVELWPAHTAAWLNLADVLVDTGRVQEALETLAELKAQ P AKFDASEKAAIIRNTQR
Sbjct:   85 CGLGPNILTRPSEEVYNGVAQPATVAAIIEIDFGVPVADTLVGAFGHVSKGDVLFKRGLFAEALACYNQCIDTAGAFEGSTNALSVAKVKQSSAMRLLAKEGGRGSSRAAGTGSTAAAASVTLEEAEASAREAVELWPAHTAAWLNLADVLVDTGRVQEALETLAELKAQFPDAKFDASEKAAIIRNTQR 274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10069.109.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.670e-11598.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10069contigEcto-sp9_F_contig10069:240..4393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-14_004590.1
Exons5
Model size1866
Cds size291
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928199.027796-UTR-Ecto-sp9_F_contig10069:239..15301622928199.027796-UTR-Ecto-sp9_F_contig10069:239..1530Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 240..1530 -
1692277792.1787677-UTR-Ecto-sp9_F_contig10069:239..15301692277792.1787677-UTR-Ecto-sp9_F_contig10069:239..1530Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 240..1530 -
1622928199.0713375-UTR-Ecto-sp9_F_contig10069:3217..32641622928199.0713375-UTR-Ecto-sp9_F_contig10069:3217..3264Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 3218..3264 -
1692277792.2172294-UTR-Ecto-sp9_F_contig10069:3217..32641692277792.2172294-UTR-Ecto-sp9_F_contig10069:3217..3264Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 3218..3264 -
1622928199.083383-UTR-Ecto-sp9_F_contig10069:3734..38791622928199.083383-UTR-Ecto-sp9_F_contig10069:3734..3879Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 3735..3879 -
1692277792.2266738-UTR-Ecto-sp9_F_contig10069:3734..38791692277792.2266738-UTR-Ecto-sp9_F_contig10069:3734..3879Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 3735..3879 -
1622928199.0945659-UTR-Ecto-sp9_F_contig10069:4301..43931622928199.0945659-UTR-Ecto-sp9_F_contig10069:4301..4393Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 4302..4393 -
1692277792.2350552-UTR-Ecto-sp9_F_contig10069:4301..43931692277792.2350552-UTR-Ecto-sp9_F_contig10069:4301..4393Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10069 4302..4393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928199.0389352-CDS-Ecto-sp9_F_contig10069:1530..16411622928199.0389352-CDS-Ecto-sp9_F_contig10069:1530..1641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10069 1531..1641 -
1692277792.18787-CDS-Ecto-sp9_F_contig10069:1530..16411692277792.18787-CDS-Ecto-sp9_F_contig10069:1530..1641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10069 1531..1641 -
1622928199.0513792-CDS-Ecto-sp9_F_contig10069:2156..22461622928199.0513792-CDS-Ecto-sp9_F_contig10069:2156..2246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10069 2157..2246 -
1692277792.1957252-CDS-Ecto-sp9_F_contig10069:2156..22461692277792.1957252-CDS-Ecto-sp9_F_contig10069:2156..2246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10069 2157..2246 -
1622928199.060964-CDS-Ecto-sp9_F_contig10069:3127..32171622928199.060964-CDS-Ecto-sp9_F_contig10069:3127..3217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10069 3128..3217 -
1692277792.2066348-CDS-Ecto-sp9_F_contig10069:3127..32171692277792.2066348-CDS-Ecto-sp9_F_contig10069:3127..3217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10069 3128..3217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10069.109.1prot_Ecto-sp9_F_contig10069.109.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10069 1531..3217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10069.109.1

>prot_Ecto-sp9_F_contig10069.109.1 ID=prot_Ecto-sp9_F_contig10069.109.1|Name=mRNA_Ecto-sp9_F_contig10069.109.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=97bp
MRLLAKEGGRGSSRAAGTGSTAAAASVTLEEAEASAREAVELWPAHTAAW
LNLADVLVDTGRVQEALETLAELKAQLPGAKFDASEKAAIIRNTQR*
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mRNA from alignment at Ecto-sp9_F_contig10069:240..4393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10069.109.1 ID=mRNA_Ecto-sp9_F_contig10069.109.1|Name=mRNA_Ecto-sp9_F_contig10069.109.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4154bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10069:240..4393- (Ectocarpus species9 EcSCA_722f female)
GGTGCGGCCTCGGTCCCAACATTTTGACGAGGCCTTCCGAAGAGGTGTAC
AACGGGGTGGCCCAGCCAGCCACTGTGGCGGCAATAATCGAGGCAAGCAA
CGAGAAATAGCGCCCTTGAAAACAATGCAAAACGACTTTGTTCATGCTGG
AACCACTGGACGCCGTGTGCCTTTTTTCAACCCCTGATGATGGCGGGCAC
ATGCCTACCCTGCTTGCTACGGCCACGCCACCGTCCGTCTGTAAAACCTC
GCGCCATCCTCATCCTAGACGAGCACCGGTGCGGAGCGTGAAACATTTAG
CGCGAGATGTGATACATGCGGCTGCCGCTATCAGCGTCTGCCGTCGAAAC
TAGCTACTACTGTAGACGTCGCATTTCGGCGCGCTTCATCCCTTCGCCGC
CCATGTTGTTCCTTATGTAGCACGGAAGCAACGCATGCACTGATCAAAAT
ACGCAACGCGGTCTTATCTGTACCTTATTTTGCCCCCACTCGTGGTGTTG
CATGTTGCGATCAGATCGATTTTGGTGTCCCGGTTGCGGACACCCTCGTG
GGGGCGTTTGGCCATGTGTCGAAGGGAGACGTCCTCTTCAAGCGAGGCCT
GTTCGCCGAGGCGTTGGCGTGCTATAATCAGTGCATCGACACAGCCGGAG
CCTTCGAGGGTGTGTAGGTGGTTCCTCGAAGAGTGTTCTCCCCCTCCCGG
CGACGATCGGATAGATAGGCTAAGGAAAACATTTTTGAGACACCTTTGGG
AAAGTACGATTTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGT
CCTCTCGAGGACGTGTGGTCAATGGTCCAACCGCAAAAGAGTACGAAACA
TGAAAGTACCCCCCCCCCCGGCTGTTCATCGAGCAGTCATCAAAGCATGA
CCGCGAGGGATCCGCCCAAGAATGAGGCATGCTTTGATGTTTCGGGAACA
CCGCATTGTTGGCTGGCTGGCAGGCTTGTTTGTTTTTGTTGGACCCTCTC
ACTCCTGTCGTATTCCCTCCCTTCCTCCGGCGTGTCCTCTCTTGCACATG
CTGATTGACTTGCTCCACTACGCTGCTGATATTGCTGCTGCTGCTGCTGC
TGCTGTCGCTGCTGTTGCTGGCTCGGCAGGGAGCACGAACGCGCTTAGCG
TGGCCAAGGTGAAGCAGTCGACCGCGATGCGCTTGTTGGCGAAGGAGGGG
GGTAGGGGCAGCAGCCGGGCTGCGGGCACCGGGAGCACTGCAGCTGCCGC
GTCTGTTACGCTCGAGGTATGCTATTATCATTTGGGCGCCGTTATTTTCC
GAACACGTCCAAACCCTTCATTGGTGATGGGAATGACGCAAGCGCAGGCT
TTGTGTGAGAATATGAGCGTGGACTGGAGCAGCGCCTTAGAGGCGTGTTC
AAACAAGCGGGAGCACAGCGTGTGCTTCTCAAGCGGTTGATTTGATCGGC
AGGAACTTGCACATCTAGAAGGGGGCGCGCGGGGGGGGGGGGGGGGGGGG
GGATTGGCTTCATCTTTTGCAGGCTGGAAAGGGCAGCCGGGAGGGGGGGA
GGCANNNNNNNNNNGGGTTGCGCGTGGGGGCGTCGGCGGCGCGGGGTGCG
GCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTACTTG
CCTTCGTCATTTGGCCATCGACCAAGGATCCCTTGCGGGACGGAGTGCCG
TTTCTGTTCCTCCTAACAGAGACACACTGTCGGGCGCTCTGCTAGTTTAG
AACTTGTGGCATGTAGGTGCTCGAAACAAGAGTTTGTTTGGGTTTTCCGT
ACGGCCCACCTGTTAGTCCTTGATGGCATGGAAACACGGATCATCTTCGG
CTTTTCCGTCACTCCTGGTCTAACACTCTCATCCCACGAAGGAGAACCTT
CTGCCAGCCCTCATAGTGGATGCATAGCGGATGCATAGCGGATGCAAGTT
ACCGGTGCCCTGGGATTCTCCAGCGACGTCGCGTGAGGAGGGCGGGGGGG
TGGGGCAAGACCTCTTTCTTGTGCATGAATCACGTGTAACTTGGTTAACA
ATGAGCGAGGCGCTGTGCTCCTGCACAAGAATCGTTTGATACGAGTGTCA
CTGACGTCGCCCCCGTTTCCTTTGAACCCTTTATCACATCTCAACAGGAG
GCCGAGGCCTCGGCTCGCGAGGCGGTGGAGCTCTGGCCAGCACACACAGC
AGCATGGCTTAACCTGGCTGATGTTCTGGTCGACACGGTAAGAGAGATAG
ATTCAAAGGAGATGTATTGCGCGGGAGAGAGGTTTAAGTGCTCGAAATAT
GATGATTTTCTTTGCGGCATGCTCCTTCGCCCCTTCTTAGCTTAGTCCCT
CCCGAAGGAGCGCAGACCTCGTGCGGATGAGTCTGGCGGGACCTATGTGC
GGGTACGCAGCTGTTTCGCTCCTGTCAGTCGTGTTTTCATCGATTTGCCA
TTGTTGTTCCAGGCTGATACAAACCCTTCTCGGATAGCGTATTCGTTGCT
GCTGTTGCTGCTGCTGTTGTTGCTGTCGTCGCCATTCCATCACCAAAACG
TCTTGCCTCTCGACAAAGCTCTTCTCTCCGTTTGCTATTGTTCCCCTCCA
CACTCCTCACAAACGCCCATCCCCTGTTACGCGTGCACGGGGACATCTGA
TGTGTTGCATAACCCAGCGCGTCCCCCCCCTCTCTCTCCACCAAAATCGC
TGGACGGTTTGTTGGCCCTTTTCGATCGAACTAAACTGGAAACGTGCGGC
AGGGAAGAGTCCAGGAAGCGCTGGAAACGTTGGCCGAGTTGAAGGCTCAG
CTCCCGGGTGCAAAGTTCGACGCCTCGGAGAAGGCGGCCATCATCAGAAA
TACACAGCGGTAGCCTAGCAGTTTCGCAAAGCTAGGTAGGTTGTGGACAG
GGAGATGGGGATTGGCTTCACTATTTGAAGCTGCGTCGTTACCGGGGGGG
GGTCGCGCTGGATTGGTTGAGCGGGCTTAAAAAACGCCGGTAGGAATAAG
CGGTGTACCCAATGAATATCTCTTGACGTTCGGTTCCGAGGATTCTCCCA
CCCGGCCCCGCCGTCCCTTCCGCCCGCCTCGCTCGGATAGATATGCACCG
GAAGCACGCAACAACTTTTACCATACTTGGCAATAATCGCAACTGAGCAC
GGACGCGTGCGTAGCGAGCGCGCTCTGTTGGTAGAATCACCTGTGGTGCC
CCCCGCCACCAGGCCCGGTCTCAACAGAGTGGTGTTGGTTGATGGCGCTC
AAGCCTGTGAGATACGCTGACTTCAGTGCAGCAGCATTGAGTTTCGTCAC
GTAAGTTAGAAAGAAACACGGCATCTGAGTTGCCACGCGTTGAATGTTTT
TTTTTCCGCCAGGGGTTATAGAAGGAATTCTGCCCCGAAGCCGAAGTAAC
GTGAGTGTGAAGTGGTGTTCGAACCCTTGATAAGACTAGCTGAAAGGTGG
GTGCAAATAGACCACGATCCTCCTCCTCCTCCTCCCGTTACGGAAGGCCA
TCTACGATGGTGGCAGCAGATTTTCTACGAAAGGGGAGGGACAGCAGTCG
GTGGTGATCGGTCAGTATCTTCCGTCGCACCACCTGCAGTGTTCGTTCGT
GAAGTTCGCTGGTATTTCCCTCAAGAGGGCGTAAGTTTCTTTCAGAGGTA
ACAGCACTAGGTGGGGTTATCATCCCGTTCCGGTGCGGTCGGATTATCTG
CTTGAGTCACGTGGGGAAAGGGACTGAGCTTTCGTCAGCACGATTGTATG
CCTTCACTTTGTCGATTTACATACTATGTATCGTCCAGAAGCGCTCGGGC
GTCGTCTTCATCTTTTGGAATTGCGGCGGAACCCTCCCGCGGGGGTTATT
GGGGAGTAGGGAAGCCTTGGGCAGTATAGACAACCAACCGCGTTTGCCCG
CAGTGCCAGCGCCGACCTGACCAGCTGAATAAAGCAGTTTTCTTGCGGCG
ACATGAGCGGCGTAACATGACGCAGAGAGTAAGTTGGCAACAAGTCGTGG
CACGATAGACACGACCAACCAACAGAAGAAATCGCAACCAAACGTCAAGA
TTTCCTAGATTTGGTTGTCGCGATTTTGCGGCGGTGGCGGGTTTGTGTGA
CCGACCAAAACCTACAGTATTACAGTAGTTCGACCGTTACGGGAATGATG
CCAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10069:240..4393-

>mRNA_Ecto-sp9_F_contig10069.109.1 ID=mRNA_Ecto-sp9_F_contig10069.109.1|Name=mRNA_Ecto-sp9_F_contig10069.109.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10069:240..4393- (Ectocarpus species9 EcSCA_722f female)
ATGCGCTTGTTGGCGAAGGAGGGGGGTAGGGGCAGCAGCCGGGCTGCGGG
CACCGGGAGCACTGCAGCTGCCGCGTCTGTTACGCTCGAGATGCGCTTGT
TGGCGAAGGAGGGGGGTAGGGGCAGCAGCCGGGCTGCGGGCACCGGGAGC
ACTGCAGCTGCCGCGTCTGTTACGCTCGAGGAGGCCGAGGCCTCGGCTCG
CGAGGCGGTGGAGCTCTGGCCAGCACACACAGCAGCATGGCTTAACCTGG
CTGATGTTCTGGTCGACACGGAGGCCGAGGCCTCGGCTCGCGAGGCGGTG
GAGCTCTGGCCAGCACACACAGCAGCATGGCTTAACCTGGCTGATGTTCT
GGTCGACACGGGAAGAGTCCAGGAAGCGCTGGAAACGTTGGCCGAGTTGA
AGGCTCAGCTCCCGGGTGCAAAGTTCGACGCCTCGGAGAAGGCGGCCATC
ATCAGAAATACACAGCGGTAGGGAAGAGTCCAGGAAGCGCTGGAAACGTT
GGCCGAGTTGAAGGCTCAGCTCCCGGGTGCAAAGTTCGACGCCTCGGAGA
AGGCGGCCATCATCAGAAATACACAGCGGTAG
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