mRNA_Ecto-sp9_F_contig10057.93.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10057.93.1
Unique NamemRNA_Ecto-sp9_F_contig10057.93.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: CRM1_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS67_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 5.200e-131
Identity = 202/205 (98.54%), Postives = 204/205 (99.51%), Query Frame = 1 
Query:    1 QDQVASFAGTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            QDQVASFAGTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDEN GEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLS+QVEVSG+QFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK
Sbjct:  212 QDQVASFAGTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDEN-GEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSKQVEVSGSQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 415
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: CRM1_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK2_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 1.100e-128
Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 1 
Query:    4 DQVASFAGTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            DQVASFAGTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDEN GEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSG+QFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFL+AHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK
Sbjct:  260 DQVASFAGTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDEN-GEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGSQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 462
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: Importin (N-terminal domain-containing protein n=27 Tax=Oomycota TaxID=4762 RepID=M4BY55_HYAAE)

HSP 1 Score: 314 bits (805), Expect = 6.730e-98
Identity = 162/209 (77.51%), Postives = 182/209 (87.08%), Query Frame = 1 
Query:    1 QDQVASFAG----TDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            Q+Q+   AG    T  RR +   ++ ++R V+I++M KP EVLIVEDEN GE+VRETTKDTEA++QYK+M ETLVYLTHLN DDTE IMLEKL+ QVE  GT+++WN+LNTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK
Sbjct:  310 QNQMNPLAGFQNQTRSRRDLVSPVMNRVRHVMISKMVKPSEVLIVEDEN-GEIVRETTKDTEALSQYKTMHETLVYLTHLNYDDTETIMLEKLTAQVE--GTEWSWNNLNTLCWAIGSISGAMSEENEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 515
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: Exportin1 (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ33_9STRA)

HSP 1 Score: 313 bits (803), Expect = 2.610e-97
Identity = 158/193 (81.87%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:   37 RRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            R   Y+ +L++IR V+I RM+KPEEVLIVEDEN GE+VRETT+DTEAIAQYK+MRETLVYLTHL+ +DTE IML KL  QV+  G +F+WN+LNTLCWAIGSISGAM+EEEEKRFLVTVIKDLLNL EMKRGKDNKAV+ASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHE HPGVQDMACDTFLKI+QK
Sbjct:  378 RTAAYKGILSRIRHVLIMRMSKPEEVLIVEDEN-GEIVRETTRDTEAIAQYKTMRETLVYLTHLHYEDTESIMLNKLCLQVD--GREFSWNNLNTLCWAIGSISGAMSEEEEKRFLVTVIKDLLNLCEMKRGKDNKAVIASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHETHPGVQDMACDTFLKIAQK 567
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AX47_9STRA)

HSP 1 Score: 288 bits (737), Expect = 8.730e-97
Identity = 144/173 (83.24%), Postives = 159/173 (91.91%), Query Frame = 1 
Query:   97 AKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            AKPEEVLIVEDEN G++VRETTKDT+ IAQYK+MRETLV+LTHLN DDTE IML KL+ QV+  GT ++WN+LNTLCWAIGSISGAM+EEEEKRFLVTVIKDLL L E KRGKDNKAV+ASNIMYVVGQYPRFL+AHWKFL+TVVNKLFEFMHE HPGVQDMACDTFLKI+ K
Sbjct:    1 AKPEEVLIVEDEN-GDIVRETTKDTDVIAQYKTMRETLVFLTHLNCDDTESIMLAKLTEQVD--GTAWSWNNLNTLCWAIGSISGAMSEEEEKRFLVTVIKDLLGLCEQKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLKTVVNKLFEFMHESHPGVQDMACDTFLKIATK 170
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: CRM1_C (domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V416_9STRA)

HSP 1 Score: 303 bits (777), Expect = 2.140e-96
Identity = 152/193 (78.76%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:   37 RRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            R+ + + +L+++R+V+I++M KP EVLIVEDEN GE+VRETTKDTEA++QYK+M E LVYLTHL+ DDTE IMLEKL+ QVE +G  ++WN+LNTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFL+TVVNKLFEFMHELHPGVQDMACDTFLKI+QK
Sbjct:  221 RKSLLKVILSRLRVVMISKMVKPSEVLIVEDEN-GEIVRETTKDTEALSQYKTMHEGLVYLTHLDYDDTENIMLEKLTDQVEGNG--WSWNNLNTLCWAIGSISGAMSEENEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHELHPGVQDMACDTFLKIAQK 410
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: Embargoed ((Fragment) n=7 Tax=Elateriformia TaxID=41087 RepID=A0A2L0CVE5_9COLE)

HSP 1 Score: 294 bits (752), Expect = 2.840e-96
Identity = 145/197 (73.60%), Postives = 173/197 (87.82%), Query Frame = 1 
Query:   25 GTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            GT  RRG+Y+ +L K+R ++I+RMAKPEEVL+VE++N GEVVRE  KDT++I  YK+MRETLVYLTHL+  DTE+IM EKL  QV  +G++++W +LNTLCWAIGSISGAM+EE+EKRFLVTVIKDLL L E KRGKDNKA++ASNIMYVVGQYPRFLRAHWKFL+TVVNKLFEFMHE H GVQDMACDTF+KI+ K
Sbjct:  151 GTSGRRGLYQEVLNKVRYIMISRMAKPEEVLVVENDN-GEVVREFMKDTDSINLYKNMRETLVYLTHLDYTDTERIMTEKLQNQV--NGSEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIALK 344
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: Importin (N-terminal domain-containing protein n=14 Tax=Albugo TaxID=65356 RepID=A0A024GRP6_9STRA)

HSP 1 Score: 312 bits (799), Expect = 2.900e-96
Identity = 157/193 (81.35%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:   37 RRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            R+ +   +L+++R V+I++M KP EVLIVEDEN GE+VRETTKDTEA++QYK+M ETLVYLTHLN DDTE IMLEKL+ QVE  GT+++WN+LNTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK
Sbjct:  454 RKDLVASILSQVRHVMISKMVKPSEVLIVEDEN-GEIVRETTKDTEALSQYKTMHETLVYLTHLNYDDTETIMLEKLTAQVE--GTEWSWNNLNTLCWAIGSISGAMSEENEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 643
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: CRM1_C (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C6E5_9STRA)

HSP 1 Score: 303 bits (777), Expect = 4.540e-96
Identity = 152/193 (78.76%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:   37 RRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            R+ + + +L+++R+V+I++M KP EVLIVEDEN GE+VRETTKDTEA++QYK+M E LVYLTHL+ DDTE IMLEKL+ QVE +G  ++WN+LNTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFL+TVVNKLFEFMHELHPGVQDMACDTFLKI+QK
Sbjct:   76 RKSLLKVILSRLRVVMISKMVKPSEVLIVEDEN-GEIVRETTKDTEALSQYKTMHEGLVYLTHLDYDDTENIMLEKLTDQVEGNG--WSWNNLNTLCWAIGSISGAMSEENEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHELHPGVQDMACDTFLKIAQK 265
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Match: CRM1_C (domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BT21_EMIHU)

HSP 1 Score: 308 bits (790), Expect = 4.750e-96
Identity = 155/193 (80.31%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:   37 RRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVVRETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQFTWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFLKISQK 615
            R  +Y  +LTK+R ++++RMAKPEEVLIVEDEN GE+VRET KD++AI  YK+MRETLVYLTHLN DDTE IML+KL  Q +V G+Q++W++LNTLCWAIGSISGAM+EE+EKRFLVTVIKDLL L EMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFL+TVVNKLFEFMHELHPGVQDMACDTFLKISQK
Sbjct:  456 RLQLYAPILTKLRQLMVSRMAKPEEVLIVEDEN-GEIVRETMKDSDAITLYKTMRETLVYLTHLNYDDTENIMLDKL--QYQVDGSQWSWHNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHELHPGVQDMACDTFLKISQK 645
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10057.93.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CRM1_C5.200e-13198.54domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CRM1_C1.100e-12898.53domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Importin6.730e-9877.51N-terminal domain-containing protein n=27 Tax=Oomy... [more]
Exportin12.610e-9781.87n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Y... [more]
Hypothetical8.730e-9783.24protein (Fragment) n=1 Tax=Minutocellus polymorphu... [more]
CRM1_C2.140e-9678.76domain-containing protein (Fragment) n=5 Tax=Aphan... [more]
Embargoed2.840e-9673.60(Fragment) n=7 Tax=Elateriformia TaxID=41087 RepID... [more]
Importin2.900e-9681.35N-terminal domain-containing protein n=14 Tax=Albu... [more]
CRM1_C4.540e-9678.76domain-containing protein (Fragment) n=1 Tax=Aphan... [more]
CRM1_C4.750e-9680.31domain-containing protein n=1 Tax=Emiliania huxley... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10057contigEcto-sp9_F_contig10057:126..2880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score397.5
Seed ortholog evalue3.7e-108
Seed eggNOG ortholog2880.D8LS67
Preferred nameXPO1
KEGG koko:K03939,ko:K14290
KEGG TC1.I.1,3.D.1.6
KEGG Pathwayko00190,ko01100,ko03008,ko03013,ko04013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05164,ko05166,ko05169,map00190,map01100,map03008,map03013,map04013,map04714,map04723,map04932,map05010,map05012,map05016,map05164,map05166,map05169
KEGG ModuleM00143
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000056,GO:0000122,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009266,GO:0009408,GO:0009506,GO:0009553,GO:0009555,GO:0009628,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009889,GO:0009890,GO:0009892,GO:0009932,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033750,GO:0034613,GO:0040007,GO:0042221,GO:0042254,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045892,GO:0045934,GO:0046822,GO:0046825,GO:0046907,GO:0048229,GO:0048468,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0055044,GO:0060255,GO:0060341,GO:0060560,GO:0065007,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0098687,GO:0140104,GO:0140142,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10057.93.1prot_Ecto-sp9_F_contig10057.93.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10057 126..2880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928197.9062142-CDS-Ecto-sp9_F_contig10057:125..3411622928197.9062142-CDS-Ecto-sp9_F_contig10057:125..341Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 126..341 -
1692277791.2574313-CDS-Ecto-sp9_F_contig10057:125..3411692277791.2574313-CDS-Ecto-sp9_F_contig10057:125..341Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 126..341 -
1622928197.918226-CDS-Ecto-sp9_F_contig10057:926..10431622928197.918226-CDS-Ecto-sp9_F_contig10057:926..1043Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 927..1043 -
1692277791.272759-CDS-Ecto-sp9_F_contig10057:926..10431692277791.272759-CDS-Ecto-sp9_F_contig10057:926..1043Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 927..1043 -
1622928197.9294016-CDS-Ecto-sp9_F_contig10057:1624..17701622928197.9294016-CDS-Ecto-sp9_F_contig10057:1624..1770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 1625..1770 -
1692277791.2808642-CDS-Ecto-sp9_F_contig10057:1624..17701692277791.2808642-CDS-Ecto-sp9_F_contig10057:1624..1770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 1625..1770 -
1622928197.9399924-CDS-Ecto-sp9_F_contig10057:2744..28801622928197.9399924-CDS-Ecto-sp9_F_contig10057:2744..2880Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 2745..2880 -
1692277791.2882743-CDS-Ecto-sp9_F_contig10057:2744..28801692277791.2882743-CDS-Ecto-sp9_F_contig10057:2744..2880Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 2745..2880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10057.93.1

>prot_Ecto-sp9_F_contig10057.93.1 ID=prot_Ecto-sp9_F_contig10057.93.1|Name=mRNA_Ecto-sp9_F_contig10057.93.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=205bp
QDQVASFAGTDLRRGVYERLLTKIRLVVITRMAKPEEVLIVEDENAGEVV
RETTKDTEAIAQYKSMRETLVYLTHLNNDDTEQIMLEKLSRQVEVSGTQF
TWNSLNTLCWAIGSISGAMNEEEEKRFLVTVIKDLLNLVEMKRGKDNKAV
VASNIMYVVGQYPRFLRAHWKFLRTVVNKLFEFMHELHPGVQDMACDTFL
KISQK
back to top

mRNA from alignment at Ecto-sp9_F_contig10057:126..2880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10057.93.1 ID=mRNA_Ecto-sp9_F_contig10057.93.1|Name=mRNA_Ecto-sp9_F_contig10057.93.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2755bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10057:126..2880- (Ectocarpus species9 EcSCA_722f female)
CAGGACCAGGTCGCCTCCTTTGCCGGCACCGACTTGCGACGAGGGGTGTA
CGAGAGGCTGCTGACGAAGATCCGGCTTGTGGTGATCACGAGGATGGCCA
AGCCGGAGGAGGTGCTGATCGTGGAGGATGAGAACGGTAAGAAAGGAGAA
AGAGGGCGACGTCGCCTGGGCTGCAGTGTGATGGGGTGCGGTCTGTCTGT
CTGTCTATCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCAATTGCTCTCTCCCTTTACCTGTCTATCTCGTGAGTGAA
TGAGTGTGTGTGAGTGAGTTAGTTGAGTGATGGAAGTGAGTAAGTTAGTG
ATGGAAGTGAGTGAGTGAGTGAGTGACGGAGTGACGGAGTGACCCCCACG
CGATTGGTTCAGAAAAAGAGGCGGCGGCGCGCACGTGACCCATGGGACGC
GGGAGGAGGAGAAGAGAAAGGAGTGTCGTCGCTTGTTGCTGCTGCTGGTG
CTAGCGTGGGGCGTTTGTGCACACGGTTGTTTCCGATGGTGGTTGTTTTA
TGTTGAGGTGTACTGCTAGACGACGACGATCGTGCTGTGCTGCTGCTTGC
GTTGTGGGCGCCTTAGGTGCGCGGACGTACCGGTGCTGCTTTCGGTGTGT
CATGTCGGTGTTAGGCGTTGCTACTGCTATTAGTACTGCTGCTTTGCAGT
GGTTCGTGAAGGAGGCAGTGAGTGCTGTGTTGCTGTTGCCCGTTGTGTTT
GGCACGAAACGAAGCGTTGTTGGAACAGAGGTGCCGCTGCTAAATACCTT
CCACTGGCCTCACATCCCAGTCGCGAGGGCCCTTCAGGCTTGTGTGGATC
TCGGAGGGGTGGGGGCTCTTACGTGTGGTATGCCTTAGCGGTTAGACCAT
TGACCACGCGTCCTCGTAAGGACGAGGGGGGTACGTATCTTGGTTGCACC
ACACGCAGTTCTCGCGCCGTGTGCCTCGCGCGTGTGCCGCAGTATTGTAG
TGTTATCTTGAAAAGTCACTTTTTACACGTGTGGTTCTTCCTTGGCTCGG
CTGTTTTCTTTGTTTCTGCGGCGCGGGGGCCGTGCGTGTGCCTCTTGCGC
CTGCGCTGAGCAGGGGAAGTGGTGAGGGAGACGACTAAGGACACGGAAGC
GATCGCCCAGTACAAGAGCATGCGGGAGACGCTCGTGTACCTGACCCACC
TCAACAACGATGACACGGAGCAGATCATGCTCGAGAAGCTCAGCAGGCAG
GTCGAGGTACGTTTATGATCTTGAGGGTCCCGGAGCTGTTTTGGTAGTAC
CCGGGGGGGGGGGGGGGGGGACGGAACGGTGGTAAATGGAACCTGGCCAT
GCGGGTTGGTCGGCGATGTTGGGGATGTGTCGAAGGTGGCTCGGAAACAG
TTTGTGCTGGGGAGAGCAACGCAAACGTCCAAGCTGTCGGTTTGTGTATT
CGTTCGAAAGTCCTTGCAGTTCACGTATAGCTTGTTCCCGAAAGCGTAAA
GTTAACAGATACATGCCGTAGTCGGGTTGTTCACATTACACGCGGGTTAT
ATTGCGTGCCGCGGGACGTTTGCCATGGATTGGGCACCAGGGCTCGCGAA
TCAACAATGAGTTTGTTTTTTCAAACCGTCTTACTTGACACGTCGCCGGC
GTCGCGGTCGCCGCCATCATGCATTCACTCAAAACTCATTCCGAGGCGCC
TTACGTCCCATCCCACGGGCTGCCTTGCTTTGACCGTCTCTATGTTTTCT
CATTTGTTTGTTTATTTTTATTTTTCGCCTTTTTTTTCCTCTGTCTCTCT
CTCTTTGCCGTTTGTTCTTTTCCGTGCCTTGTGACAGGTGTCGGGAACCC
AGTTTACGTGGAACAGCCTGAACACATTGTGTTGGGCCATCGGCTCCATC
TCCGGGGCGATGAACGAAGAGGAGGAGAAGCGCTTTCTCGTCACGGTCAT
TAAGGTCAGCCTGACGCGACAGACAGGCAGACGCACACCCGCCTTGTTGG
GTGGTGGTTGGCTGAACCCTAAGCACGTGGTTGGTAGTACAGGATACTTT
TGTTTTAGGGACAATATTAGAAAGTCACGCACGAATCAAGCACGGTGTTG
TAGCAGCCAGCGGGAAATACTGCAAGAATGAGACTACTGTCGTACGTGTC
TTTCCTTCCCTACGGTACTATCTTATTCCGGACTTGTCAGACAGGGGTGC
GATGCACAGGGGTGCGACGAAACAGCCATGAAGGAAGTAAATCCAGTCCA
TTCAATTCAACACCCAAAGGAGTCGTCACAGCTATCGCACGGGCGTGGGT
GAGACGACTCCGGGAAATCCCCCACTCCGGGGGGGCGTAAAACTACCAGA
AACAAGAAAAGTTGTTCCGATTTCTAACACCGAGATGGGAGTTATGGCAA
ACGCCGCCTCGAGTGATCGCACGGGGGGGTGCGTGTGCAAGACAAGGACG
AAGTGATTCACGAACAGTATCGTTCCCGGAAACCGCTGTTGCTTTTTCAT
TCCCAAAAAACAAACAAAAAAAACGTGACGAATAAATAGGACCTTCTCAA
CTTGGTTGAGATGAAGCGGGGGAAGGACAACAAGGCGGTCGTGGCCTCGA
ACATCATGTACGTCGTCGGGCAGTACCCCCGGTTTCTCCGGGCGCACTGG
AAGTTCTTGCGGACGGTGGTGAACAAGCTCTTCGAGTTCATGCACGAGCT
GCACCCGGGTGTCCAGGACATGGCGTGCGACACCTTCCTCAAGATCTCGC
AGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10057:126..2880-

>mRNA_Ecto-sp9_F_contig10057.93.1 ID=mRNA_Ecto-sp9_F_contig10057.93.1|Name=mRNA_Ecto-sp9_F_contig10057.93.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1230bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10057:126..2880- (Ectocarpus species9 EcSCA_722f female)
CAGGACCAGGTCGCCTCCTTTGCCGGCACCGACTTGCGACGAGGGGTGTA
CGAGAGGCTGCTGACGAAGATCCGGCTTGTGGTGATCACGAGGATGGCCA
AGCCGGAGGAGGTGCTGATCGTGGAGGATGAGAACGCAGGACCAGGTCGC
CTCCTTTGCCGGCACCGACTTGCGACGAGGGGTGTACGAGAGGCTGCTGA
CGAAGATCCGGCTTGTGGTGATCACGAGGATGGCCAAGCCGGAGGAGGTG
CTGATCGTGGAGGATGAGAACGCAGGGGAAGTGGTGAGGGAGACGACTAA
GGACACGGAAGCGATCGCCCAGTACAAGAGCATGCGGGAGACGCTCGTGT
ACCTGACCCACCTCAACAACGATGACACGGAGCAGATCATGCTCGAGAAG
CTCAGCAGGCAGGTCGAGCAGGGGAAGTGGTGAGGGAGACGACTAAGGAC
ACGGAAGCGATCGCCCAGTACAAGAGCATGCGGGAGACGCTCGTGTACCT
GACCCACCTCAACAACGATGACACGGAGCAGATCATGCTCGAGAAGCTCA
GCAGGCAGGTCGAGGTGTCGGGAACCCAGTTTACGTGGAACAGCCTGAAC
ACATTGTGTTGGGCCATCGGCTCCATCTCCGGGGCGATGAACGAAGAGGA
GGAGAAGCGCTTTCTCGTCACGGTCATTAAGGTGTCGGGAACCCAGTTTA
CGTGGAACAGCCTGAACACATTGTGTTGGGCCATCGGCTCCATCTCCGGG
GCGATGAACGAAGAGGAGGAGAAGCGCTTTCTCGTCACGGTCATTAAGGA
CCTTCTCAACTTGGTTGAGATGAAGCGGGGGAAGGACAACAAGGCGGTCG
TGGCCTCGAACATCATGTACGTCGTCGGGCAGTACCCCCGGTTTCTCCGG
GCGCACTGGAAGTTCTTGCGGACGGTGGTGAACAAGCTCTTCGAGTTCAT
GCACGAGCTGCACCCGGGTGTCCAGGACATGGCGTGCGACACCTTCCTCA
AGATCTCGCAGAAGGACCTTCTCAACTTGGTTGAGATGAAGCGGGGGAAG
GACAACAAGGCGGTCGTGGCCTCGAACATCATGTACGTCGTCGGGCAGTA
CCCCCGGTTTCTCCGGGCGCACTGGAAGTTCTTGCGGACGGTGGTGAACA
AGCTCTTCGAGTTCATGCACGAGCTGCACCCGGGTGTCCAGGACATGGCG
TGCGACACCTTCCTCAAGATCTCGCAGAAG
back to top