mRNA_Ecto-sp9_F_contig100.62.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig100.62.1
Unique NamemRNA_Ecto-sp9_F_contig100.62.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: FHA-HIT (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA7_ECTSI)

HSP 1 Score: 417 bits (1072), Expect = 8.200e-141
Identity = 207/232 (89.22%), Postives = 213/232 (91.81%), Query Frame = 1 
Query:    1 SATLRARALALPEYRQTPPVPVKGAGHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGVVRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLELDKARLKALEATPLRCFRCQSPMTNMTKLKEHLLGCNELLPKKGSCVGGGSSNA 696
            + T R RALALPEYR+TPP PVKGAGHWKAVLFQYLKD PMP ELQREVYFSD+QCVVVYDGYPKSRYHLLLLPKPKFLDVKQASEL RDEHLSSLRQLHATA AVAEALSQQGAGV+RCGYHGIPSLEPLHLHIISQDFDS RLTKRKHWNSFTT   FFLDASWVEARLLERGSL LDK RLKALEATPLRCFRC SPMTNMTKLKEHLLGCN  +PKK SC GGGSS+A
Sbjct:  255 AVTKRKRALALPEYRRTPPTPVKGAGHWKAVLFQYLKDEPMPVELQREVYFSDNQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTD--FFLDASWVEARLLERGSLGLDKERLKALEATPLRCFRCHSPMTNMTKLKEHLLGCNLPVPKKNSCGGGGSSDA 484
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: HIT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K612_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 4.040e-97
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 1 
Query:    7 TLRARALALPEYRQTPPVPVKGAGHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGVVRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYF 480
            T R RALALPEYRQTPPVPVKGAGHWKAVLFQYLKD PMP ELQREV+FS+DQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASEL RDEHLSSLRQLHATAAAVAEALSQQGAGV+RCGYHGIPSLEPLHLHIISQDFDS RLTKRKHWNSFTTGT+F
Sbjct:  246 TKRKRALALPEYRQTPPVPVKGAGHWKAVLFQYLKDRPMPDELQREVFFSNDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATAAAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTGTFF 403
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: HIT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS4_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.600e-54
Identity = 93/177 (52.54%), Postives = 123/177 (69.49%), Query Frame = 1 
Query:   40 YRQTPPVPVK-------GAGHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGVVRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLELDKAR 549
            Y++TPPVP++       G   WK V   + K+   PA LQ ++YF D++ +V+YDGYPK+R+HLLL+P+P FLDV + S+L R EHLS+LRQ+HA   AVAE LSQQG G +R G H +PS+EPLH+HIISQDFDS R+   +HWN FTT    FL+ +W+E  L   G L+LD  R
Sbjct:   19 YKETPPVPIENIKGFRVGRDGWKEVFHLFFKNCDHPA-LQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVIRPSDLRR-EHLSALRQMHALGRAVAEGLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERMRMPRHWNIFTTD--IFLEPAWIEEMLERHGCLQLDMER 191
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 6.630e-48
Identity = 91/190 (47.89%), Postives = 118/190 (62.11%), Query Frame = 1 
Query:  130 ELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQG---------AGVVRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLELDKARLKALEATPLRCFRC--QSPMTNMTKLKEHLLGCNELLPKKG 666
            ++Q EV++ D+  +V YDG+PK ++HLL++P+  FL+V   S L R EHL  LR+LHA   A+A+ALS Q          A V+RCGYH +PS EPLHLH++S D D   L ++ HWNSFTT    FL+ASWVE RL ERGSL LD    + LE   LRCFRC  +    +M  LK H   C   +P  G
Sbjct:   87 QIQGEVFYMDEDVMVTYDGFPKGKFHLLVVPRETFLNVTGPSAL-RKEHLPKLRRLHAMGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTD--LFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPVPAGG 273
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: Aprataxin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G953_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 2.980e-47
Identity = 83/152 (54.61%), Postives = 108/152 (71.05%), Query Frame = 1 
Query:   40 YRQTPPVPVK-------GAGHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGVVRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGT 474
            Y+ TP VP++       G   WK V   + K+   PA LQ ++YF D++ +V+YDGYPK+R+HLLL+P+P FLDV + S+L R EHLS+L Q+HA   AVAE LSQQG G +R G H +PS+EPLH+HIISQDFDS RL   +HWN FTTG+
Sbjct:   18 YKGTPRVPIENVKGFRIGRDGWKEVFHLFFKNCDHPA-LQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVMRPSDLRR-EHLSALHQMHALGRAVAEDLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTGS 167
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: Basic (helix-loop-helix family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK61_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.180e-41
Identity = 84/208 (40.38%), Postives = 122/208 (58.65%), Query Frame = 1 
Query:   31 LPEYRQTPPVPVKGAGHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGV-VRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLELDKARLKALEATPLRCFRCQSPMTNMTKLKEHLLGCNEL 651
            +P Y Q P  P++G G W   L +YL   P   EL+  +++   + + +YDGYPK++ HLLL+PKP+FL +   +EL  D+H   + +LH+ A  +A  L +   G+ +R GYH +PSL PLH+HI+SQDFDS  L  ++HWNSFTT   FFLD   VE  L   G + +     +AL    LRC  C +    +  LK+H+ GC  +
Sbjct:  290 IPVY-QHPGQPLQGGG-WHGALIRYLDHTP---ELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTP--FFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCESM 490
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.060e-33
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:  124 PAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGV--VRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLD--ASWVEA-RLLERGSLELDKARLKALEATPLRCFRCQSP---MTNMTKLKEHL 633
            P   + +V++ D+ C+VVYD YPK+R HLL+LPK  FL +++  +     HL  LR LH  AA+VA+ L   GA V  VRCGYH IPSLEPLH+H+ISQDFDS  L  +KHWNSFTT  +   +  A WVE  +  +    E    + K + A PL             NM  LKEHL
Sbjct:  267 PGAAKPQVFYEDECCLVVYDAYPKARTHLLVLPKASFLSLRRP-QFASAGHLPRLRHLHDRAASVAKWLQSSGAAVAPVRCGYHAIPSLEPLHIHVISQDFDSPCLKTKKHWNSFTTDYFVPCEVFARWVEGDKSADPWLGESTATKWKEMLAKPLEIISSSGASLTFKNMPALKEHL 443
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: aprataxin-like (n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6DC73)

HSP 1 Score: 131 bits (330), Expect = 3.870e-33
Identity = 73/188 (38.83%), Postives = 104/188 (55.32%), Query Frame = 1 
Query:   76 GHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVA-EALSQQGAGVVRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLELDKARLKALEATPLRCFRCQSPMTNMTKLKEHLL 636
            G W   L   +KD  +  E        DD+ VV+ D YPK+RYH L+LPK     +K      + +HL  L+ +H     +  EA+ ++G    R GYH +PS+  LHLH ISQDFDS  L  +KHWNSFT+   +F+D+  V  +L + G ++      +A    PLRC  C+  +TNM KLKEH++
Sbjct:   24 GFWSLGLLDSMKDPNLQVE-------KDDKVVVIKDKYPKARYHYLVLPKENISKLKAL----QPDHLELLKHMHEVGERIIKEAIGEEGLSY-RLGYHAVPSMSHLHLHAISQDFDSPSLKTKKHWNSFTSA--YFVDSKEVMDQLEKEGKVDTSAKNPEAQLKLPLRCHVCKKELTNMPKLKEHIV 197
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: HIT (domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IM90_PLABS)

HSP 1 Score: 129 bits (325), Expect = 2.530e-32
Identity = 76/204 (37.25%), Postives = 112/204 (54.90%), Query Frame = 1 
Query:   52 PPVPVKGA-----GHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGV--VRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLELDKARLKALEATPLRCFRCQSPMTNMTKLKEHLLGC 642
            PP  V+ A     G WK VL   + +    A     V+  DD  V +YD YPK+R HLL+LP+    ++   S L R EHL  +R +  +    AE LS  G      + G+H +PSL+ LH+H+IS D DS  L  +KHWNSFTT   FFL   +V +++ E GS+++D+ R + +   PL C +C+  +  +  LK H++ C
Sbjct:    9 PPTAVQWASIPALGPWKGVLSALVNNA---ARFPFVVFADDDDTVTIYDRYPKARVHLLVLPRA---NISSISVLRR-EHLGLVRAMINSGKRAAELLSNAGMFPEGYKMGFHAVPSLDRLHMHLISCDMDSEALKNKKHWNSFTTE--FFLPPEFVVSQIEEHGSVQIDRNRYEEVLKRPLACHKCRQSLKTIPALKSHIVNC 203
[Close]
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Match: aprataxin (isoform X1 n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C727C25)

HSP 1 Score: 129 bits (324), Expect = 2.550e-32
Identity = 76/193 (39.38%), Postives = 104/193 (53.89%), Query Frame = 1 
Query:   76 GHWKAVLFQYLKDGPMPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRDEHLSSLRQLHATAAAVAEALSQQGAGVVRCGYHGIPSLEPLHLHIISQDFDSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLE--LDKARLKALEATPLRCFRCQSPMTNMTKLKEHLLGCNE 648
            GHW   L   ++D  +  E       SDD  V++ D YPK+R+H L+LPK    D+K      +  HL  L+ +H  A  + E+      GV R GYH +PS+  LHLH+ISQDFDS  L  + HWNSFTT   +F+D+  +  R LE  S    +D  + K L   PLRC  C+  +  M KLK H+L C +
Sbjct:   20 GHWSQGLKASMEDPELLVE-------SDDLVVIIKDKYPKARHHYLILPKENIPDLKSL----KSSHLPLLKHMHEQANKLTESRINSECGV-RIGYHAVPSMSHLHLHVISQDFDSPCLKTKTHWNSFTTE--YFIDSEDI-IRDLENNSCVKCIDPNKSKELLKLPLRCHNCKQELPTMPKLKSHVLNCKK 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig100.62.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FHA-HIT8.200e-14189.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
HIT4.040e-9793.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
HIT1.600e-5452.54domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized6.630e-4847.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Aprataxin2.980e-4754.61n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Basic1.180e-4140.38helix-loop-helix family protein n=2 Tax=Nannochlor... [more]
Hypothetical3.060e-3345.51protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
aprataxin-like3.870e-3338.83n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D... [more]
HIT2.530e-3237.25domain-containing protein n=1 Tax=Plasmodiophora b... [more]
aprataxin2.550e-3239.38isoform X1 n=2 Tax=Parasteatoda tepidariorum TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig100contigEcto-sp9_F_contig100:54343..58991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue2.9e-94
Seed eggNOG ortholog2880.D8LEA7
Preferred nameAPTX
KEGG koko:K10863
GOsGO:0000012,GO:0000166,GO:0000302,GO:0000785,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003697,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006163,GO:0006259,GO:0006266,GO:0006281,GO:0006298,GO:0006302,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008270,GO:0008409,GO:0008967,GO:0009117,GO:0009150,GO:0009259,GO:0009636,GO:0009987,GO:0010035,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016796,GO:0016817,GO:0016819,GO:0016895,GO:0017076,GO:0019001,GO:0019002,GO:0019637,GO:0019693,GO:0030983,GO:0031647,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033699,GO:0034641,GO:0035312,GO:0036094,GO:0042221,GO:0042493,GO:0042542,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0046403,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0047485,GO:0047627,GO:0050896,GO:0051219,GO:0051716,GO:0055086,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072521,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098501,GO:0098506,GO:0098518,GO:0120108,GO:0140097,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1905108,GO:1990165
EggNOG free text desc.DNA 5'-adenosine monophosphate hydrolase activity
EggNOG OGsCOG0241@1,KOG0562@1,KOG0562@2759,KOG2134@2759
EC3.1.11.7,3.1.11.8,3.1.12.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHIT-like domain
Ec32 orthologEc-00_001530.1
Exons6
Model size1078
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig100.62.1prot_Ecto-sp9_F_contig100.62.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig100 54722..58871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928193.6636255-UTR-Ecto-sp9_F_contig100:54342..547211622928193.6636255-UTR-Ecto-sp9_F_contig100:54342..54721Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 54343..54721 -
1692277788.5012598-UTR-Ecto-sp9_F_contig100:54342..547211692277788.5012598-UTR-Ecto-sp9_F_contig100:54342..54721Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 54343..54721 -
1622928193.7471545-UTR-Ecto-sp9_F_contig100:58871..589911622928193.7471545-UTR-Ecto-sp9_F_contig100:58871..58991Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 58872..58991 -
1692277788.6128078-UTR-Ecto-sp9_F_contig100:58871..589911692277788.6128078-UTR-Ecto-sp9_F_contig100:58871..58991Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 58872..58991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928193.6768577-CDS-Ecto-sp9_F_contig100:54721..548721622928193.6768577-CDS-Ecto-sp9_F_contig100:54721..54872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 54722..54872 -
1692277788.5113645-CDS-Ecto-sp9_F_contig100:54721..548721692277788.5113645-CDS-Ecto-sp9_F_contig100:54721..54872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 54722..54872 -
1622928193.6888962-CDS-Ecto-sp9_F_contig100:55672..557451622928193.6888962-CDS-Ecto-sp9_F_contig100:55672..55745Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 55673..55745 -
1692277788.5206084-CDS-Ecto-sp9_F_contig100:55672..557451692277788.5206084-CDS-Ecto-sp9_F_contig100:55672..55745Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 55673..55745 -
1622928193.7020843-CDS-Ecto-sp9_F_contig100:56665..567841622928193.7020843-CDS-Ecto-sp9_F_contig100:56665..56784Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 56666..56784 -
1692277788.5359952-CDS-Ecto-sp9_F_contig100:56665..567841692277788.5359952-CDS-Ecto-sp9_F_contig100:56665..56784Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 56666..56784 -
1622928193.716417-CDS-Ecto-sp9_F_contig100:57366..574911622928193.716417-CDS-Ecto-sp9_F_contig100:57366..57491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 57367..57491 -
1692277788.5450158-CDS-Ecto-sp9_F_contig100:57366..574911692277788.5450158-CDS-Ecto-sp9_F_contig100:57366..57491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 57367..57491 -
1622928193.7267816-CDS-Ecto-sp9_F_contig100:58174..582671622928193.7267816-CDS-Ecto-sp9_F_contig100:58174..58267Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 58175..58267 -
1692277788.55802-CDS-Ecto-sp9_F_contig100:58174..582671692277788.55802-CDS-Ecto-sp9_F_contig100:58174..58267Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 58175..58267 -
1622928193.736476-CDS-Ecto-sp9_F_contig100:58853..588711622928193.736476-CDS-Ecto-sp9_F_contig100:58853..58871Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 58854..58871 -
1692277788.6017437-CDS-Ecto-sp9_F_contig100:58853..588711692277788.6017437-CDS-Ecto-sp9_F_contig100:58853..58871Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 58854..58871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig100.62.1

>prot_Ecto-sp9_F_contig100.62.1 ID=prot_Ecto-sp9_F_contig100.62.1|Name=mRNA_Ecto-sp9_F_contig100.62.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=193bp
MPAELQREVYFSDDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELHRD
EHLSSLRQLHATAAAVAEALSQQGAGVVRCGYHGIPSLEPLHLHIISQDF
DSARLTKRKHWNSFTTGTYFFLDASWVEARLLERGSLELDKARLKALEAT
PLRCFRCQSPMTNMTKLKEHLLGCNELLPKKGSCVGGGSSNA*
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mRNA from alignment at Ecto-sp9_F_contig100:54343..58991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig100.62.1 ID=mRNA_Ecto-sp9_F_contig100.62.1|Name=mRNA_Ecto-sp9_F_contig100.62.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4649bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:54343..58991- (Ectocarpus species9 EcSCA_722f female)
TCGGCGACCTTACGCGCAAGAGCCTTAGCCTTGCCCGAGTACCGACAAAC
ACCACCAGTTCCCGTGAAAGGCGCCGGGCACTGGAAGGCGGTGCTGTTTC
AGTACCTGAAGGATGGGCCGATGCCCGCCGAGCTACAGGTACAGCGGATC
TGATATGACATTTTGGAGGGGGTTGTCATTCGTACCGGCGCAAGGTATGG
GGCGGGGAATGCGGAAGGTGGGCGAGGGCGTGTTCTTCGAATTGTTTCGG
AGTTCATTTCATGCCTTGGTGAGCACCTACTCGGTTTGTGAGTCCGTGCA
GAGTACGGAAAACTGTTTCAATTATGGAATAAACTAGCAACATTGCTAAA
GCTCATGGTGGTGTTTCAGCACTTACTCCGCATGTACCGATATTGATTGC
ATCAATCCCGCGCACCATGACTTCATTGGTCACTGTGTACGCCTGGCCTC
CGTCACCAGTGATTTCACTCCCTTTGAGGGAAATTGTGCTTGGTTACCTG
GGGTTTCAATATGAGAAACTCGTATGCTTTCGTGCTGTGAACGCATGAGG
ATTTCGAAAACGTTTTTTCCATGAGTTCTCGTTCGTCCGCGGCGTATACA
CGCCCGAACACCCCTCTAACCTCTTTGGGTACAAGCTCGAGTTTCGCGCT
GGCATTGTTTACCCCCTTACCGACGCTGCCGTTCGAAAATATCTTTTTGT
ATGCACTGTGCCACTCGCCTGCAGCGCGAAGTCTATTTCTCGGATGATCA
GTGTGTTGTCGTCTACGACGGCTACCCCAAGTCGCGGTATCACCTGCTCC
TGCTGCCCAAACCGAAGGTGGGAGGCGTGACGTGAGGAACGTGAATTTCG
TCTGGCTGGTGTGTTCTACCGTTCTACCTCCGTGTCCGGGTCGCCCTAAC
TTTGTCACTGATTTTCTTGGCTTGACTTCGCATTGTTTTCAAGCCGTACT
TGGCTCTGTCGTTTCACTTGTTCCGTGAAATGATGCGGAACCTCTTGCTC
GGGCTGGCTGCGTACCCGTGTTGAGAGTGACGAGAAGGTTTTTCTATGTT
GTTCAGGTTGATTTAACGCTTCCTCACTGTGTTGTTTGGGATTGCAGCGC
GGCCCCCGGAGGTAAAGTATAGTCTCTGCTGCTTTTCCCAACGCGTAACT
CCCGCGTCGCGACAAGCTCGGGGAACTTCCTCCGGAGAGAAGTTTTTTTT
GGTTGCCGAATACATACATCGTTCGAAATGTGGCGGAAATCGAGCGAGTG
ATCCAGAGATATGTAAAAATGTGTGGCGATCAGTCTCGACAGGGTACGTG
TCTCGCCCTAACACCGCAAACGAAAAAGGACATGTGCAAACGCACACGTA
CCACGTTCTCCTGTCTCATGACGGTCGCTCCCAAGGTTCCCGTACACGCC
TCCCATGCCTACTACTGCTGTGGCTCCTTACTCCGTGCTCCCTAGTTTCA
TTCCTTCGATGCCAACAACGAAAAACGAACTCCGCTCTTTCACCTTGAAG
TTCCTGGACGTGAAACAAGCTTCGGAGCTCCACAGGGATGAGCACCTCTC
AAGCCTGCGCCAGCTACACGCCACAGCAGCGGCGGTGGCGGAGGCGTTAT
CTCAACAGGGGGCTGGGGTTGTCAGGTACGGTGAACGGTACTGCCATTGA
CTACAACAATGCGTACACTTATGGATTCCCGGGTGTTATTTTTTTGTGTT
TTTTTTTTATCGCGCAACTCATGTGCTGGATTGATCGCTACCACGTCAAC
GATCGCGTGCAGTTTGAACGGGAACGGAAGAGAGGGGAGTCGAGTGGAAA
ACACGCGAAGAAAGGAGGTTTGTCGTTCCGGAAAACCGCAGGTTACGTGC
GAACAATTCGTCTCCACTGCCGGCCGGTTTTCCGGATATGTCGACAGCAA
AATATTTCTGCCTGAGCGGGGTGCACGGAATCGCGCCCCGGGTGAACACG
CCGTCATGTTCCAGTTTGACCCTGACACACAGTACGCTCTGATTCTTGGC
ATTCCTTCGCTTGGCTGGCGAGAATCGATTTCCATGTTTCTGCCAGTGAT
CCCAAAGTCTTGGTGGTTCTTTTGTGAACAGCTGTCAGTGCTGGTATGGT
ACACGCAGAGTGAAGGCGCGGGGGGTCGTCGCAATATTCGAAGGCACTAA
CAAGTCATCGCAGTGACACTTCTAAATTGCTGCATCCCGCATCCAATTGT
TGTCAAGGTGCGGCTATCACGGCATTCCGTCCCTGGAGCCGCTGCACCTG
CACATCATCAGCCAGGACTTCGACAGTGCACGTCTCACAAAGCGCAAGCA
CTGGAACAGCTTTACCACAGGCACGTGTATGAAACGTCATCGCTCTCCGC
CGCTGCTGAGGATACTCGACCGTATTTTGGCCTGGCCTTGATGTGCACGT
TTGGTATTAGAGAAAGCAGTGGGAGAACCAATCGGAAACGTGACTCATCG
AATCGGCATTGAAGGCCTATTTTTTCTACCTGTAGTAGAAGGAACTTGTG
CCGGGGTGTCGGCCTGCTCGAAAACGTAAAACTGTTTTGAGTTTCACACA
CACCTAGTGTGGCAGCGCTACTGACTTTTCGACACTCAGGGTGCCAACTG
ATGCCAAACTTCTTTGAGCGTGTGCCGGGTGTGGCCAACGTGGGCAGACT
CTGCCTTAGGTGATGAACTTTTCACCCCAGCTTTTGAAATGTAATGCTTC
CGGTGTCGATGTTGTCACTTCACAACGCCCGGCTGCACATGTTTCCATCC
GTGGTTGCCCTTGTGACCCCGTTCAACGCTGGTTCTAACCTTGATGGGTT
CGGGTTAGCACAATTTGAGGCACGATCACTTTGGCAAGGGACACGTTTAT
GTGTGATATACCGAGGGTGTCGTTTGTACCGCTGCTGCATGTTTGCCATC
CGTTTCCATGAGGTTTTTTGGAGCGTGTGGGCCCACTATTGGTTCCACCA
CCTTCCAGCCAAGCCACGTTTCACTCTTTCCTATAATACCGAACCACCCT
ATGAACGCTGGTCTGAGCGTAATTCATTCCCAAGTACTGTCATGCTATTT
TCCCGAAACCCTGTCGAGGCTGACCCGGCCTAGTCGTGCACGGGCTGAGC
TTAAGTTTGGTCCCAATTTCGTATATGATGCTTGTGTTTTTGGTGTGTAT
TGCCCATTTACCACCCCACCCATTTACCACGCTACCCATTTACCACGCCT
TCACTTGGCTTTTTGGGGTATCTGGGACTCTCCCCGCATTCCGCAGATTT
TTTCCTGGATGCTTCTTGGGTGGAAGCGCGGCTGCTGGAGCGTGGGAGTC
TCGAGCTCGACAAAGCGAGGTGTTTTAACATTCTAGAGTTTCACACGCTC
CCCATTCCTCATGAAGACTCATCTCATTGTACATATACGGGCCTTTTCGA
TATTTTTCGAATCTGGTGGATCCGGCGAGGTTTGTTCCTGGGCATAAGTC
GCAGTTAACCGCGCGCTATTTGCCTTGGGTACATCCTGGTCGGAATGAAT
ATACCGTCAGGATTGCGTTTCAGCGATAACGAGAGTTGCTACAGAAACGA
GGCCCAAATCACTCGTTGTCGTTCGACGAACAGTTAACGGTGCGGACACA
TTCCGTCCACGTTGTTGTTGCCAGCGTAGAATGCATTTTCCTAGCTTCGT
CGCTGGTATTGTGAGGGTGTAGCCCGCGTGGTGCAGCCCGTGCGTCATCA
TTGCAGCTGCAGAGCATACCTGCCGCACCATATCACCTCCCCTCAGTGTA
CTTATTTTTGGATGTTGGCATGCGCTTGCCCTCGGCGGGGAGCAGCCAGC
GGGAAACTTCCGTTGTGTACGGGAGTGACACAAAAGTGTGCCTCTTTCAG
TCTGTCAGGCCATTCATGCTGTTGTGCGTAGGATTGACCCCATCATTAAG
CGATTGATTCAACACGAGCCTCATGCACGGCAGGGTTTGAGACTTTCGGA
GTCGTCGAACGCATTTTGACCACTCAGAATCTTCCCCACACGGGTAATAA
CCGATTTTGCTTGATTCATGTTTCGCGGTTAGTAGTGATGACCATGTGAC
GTGGATGCTCTTCTTCCTGTTGTGACTCTCGCTTCCAATTGGTTTGTGGG
TGGTTCTTCTTCTCCGCAGGCTGAAGGCGCTGGAAGCTACTCCGCTACGA
TGCTTCCGGTGCCAATCACCGATGACGAACATGACCAAGCTCAAGGAACA
CCTCCTGGGCTGCAATGAACTCCTACCAAAAAAAGGCAGCTGTGTCGGTG
GAGGCAGCAGCAATGCATAGGGAGCAATGAATGATCGGGGATAGAGTTGA
AGCAGCTGCCGAATGATTGGTCGGTTCTTGTAGTTGGTGTCTTCTCGCGC
AGAAAATGGCAGAGTGTGTGATGTCAACGGAGCACGCGCGGCGGCACTGA
TGTACGTGGACACGGTGCCCGCCTTCAGCCACGTGGATGAGGTCGATGCC
GACGGCATATTCATTCTAATAATAATAATGTTCACTCGATTGGTTTTGTT
GGATTTGCTATGACACCTGCTCTCTTGCGTCTGCATAGCTTGAAGGGTGG
CGAATGTCATGAGGTGCAGAAAAAAATAGCTTGGCAAGAACTTCAGAGAG
CGAACAAGGCTAGCGAGATGTACAGCTGCAATGCCTACTACATCGTGTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig100:54343..58991-

>mRNA_Ecto-sp9_F_contig100.62.1 ID=mRNA_Ecto-sp9_F_contig100.62.1|Name=mRNA_Ecto-sp9_F_contig100.62.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:54343..58991- (Ectocarpus species9 EcSCA_722f female)
ATGCCCGCCGAGCTACAGATGCCCGCCGAGCTACAGCGCGAAGTCTATTT
CTCGGATGATCAGTGTGTTGTCGTCTACGACGGCTACCCCAAGTCGCGGT
ATCACCTGCTCCTGCTGCCCAAACCGAAGCGCGAAGTCTATTTCTCGGAT
GATCAGTGTGTTGTCGTCTACGACGGCTACCCCAAGTCGCGGTATCACCT
GCTCCTGCTGCCCAAACCGAAGTTCCTGGACGTGAAACAAGCTTCGGAGC
TCCACAGGGATGAGCACCTCTCAAGCCTGCGCCAGCTACACGCCACAGCA
GCGGCGGTGGCGGAGGCGTTATCTCAACAGGGGGCTGGGGTTGTCAGTTC
CTGGACGTGAAACAAGCTTCGGAGCTCCACAGGGATGAGCACCTCTCAAG
CCTGCGCCAGCTACACGCCACAGCAGCGGCGGTGGCGGAGGCGTTATCTC
AACAGGGGGCTGGGGTTGTCAGGTGCGGCTATCACGGCATTCCGTCCCTG
GAGCCGCTGCACCTGCACATCATCAGCCAGGACTTCGACAGTGCACGTCT
CACAAAGCGCAAGCACTGGAACAGCTTTACCACAGGCACGTGTGCGGCTA
TCACGGCATTCCGTCCCTGGAGCCGCTGCACCTGCACATCATCAGCCAGG
ACTTCGACAGTGCACGTCTCACAAAGCGCAAGCACTGGAACAGCTTTACC
ACAGGCACGTATTTTTTCCTGGATGCTTCTTGGGTGGAAGCGCGGCTGCT
GGAGCGTGGGAGTCTCGAGCTCGACAAAGCGAGATTTTTTCCTGGATGCT
TCTTGGGTGGAAGCGCGGCTGCTGGAGCGTGGGAGTCTCGAGCTCGACAA
AGCGAGGCTGAAGGCGCTGGAAGCTACTCCGCTACGATGCTTCCGGTGCC
AATCACCGATGACGAACATGACCAAGCTCAAGGAACACCTCCTGGGCTGC
AATGAACTCCTACCAAAAAAAGGCAGCTGTGTCGGTGGAGGCAGCAGCAA
TGCATAGGCTGAAGGCGCTGGAAGCTACTCCGCTACGATGCTTCCGGTGC
CAATCACCGATGACGAACATGACCAAGCTCAAGGAACACCTCCTGGGCTG
CAATGAACTCCTACCAAAAAAAGGCAGCTGTGTCGGTGGAGGCAGCAGCA
ATGCATAG
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