mRNA_Ecto-sp9_F_contig100.61.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig100.61.1
Unique NamemRNA_Ecto-sp9_F_contig100.61.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig100.61.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA8_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 2.550e-92
Identity = 174/188 (92.55%), Postives = 175/188 (93.09%), Query Frame = 1 
Query:    1 LEREHEDLTHEVYELSARLASCRTTXXXXXXXXXXXXX----GLGPSDFERRQMDGGASFGASAAASDGSAGHLPRRRSQPEESVTVRAVDRVARTTATWRASRGGAHVSGSSSDHHGGDWGPVPRSRARAHPRRPLVASGSQARSSSFSGASAYESDGGYYSPSGGSWQLVGPPKRHSRAPDELPGH 552
            LEREHEDLTHEVYELSARLAS RT XXXXXXXXXXXXX    GLGPSDFERRQMDGGASFGASAAASDGSAG  PRRRSQPE SVTVRAVDRVARTTATWRASRGGAHVSGSSSDH GG WGPVPRSRARAHPRRPLVASGSQARSSSFSGASAYE+DGG YSPSGGSWQLVGPPKRHSRA DELPGH
Sbjct:  544 LEREHEDLTHEVYELSARLASSRTXXXXXXXXXXXXXXXXXAGLGPSDFERRQMDGGASFGASAAASDGSAGRWPRRRSQPEASVTVRAVDRVARTTATWRASRGGAHVSGSSSDHDGGYWGPVPRSRARAHPRRPLVASGSQARSSSFSGASAYETDGGCYSPSGGSWQLVGPPKRHSRAADELPGH 731
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BLAST of mRNA_Ecto-sp9_F_contig100.61.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N0_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.170e-70
Identity = 144/170 (84.71%), Postives = 150/170 (88.24%), Query Frame = 1 
Query:    1 LEREHEDLTHEVYELSARLASCRTTXXXXXXXXXXXXX---GLGPSDFERRQMDGGASFGASAAASDGSAGHLPRRRSQPEESVTVRAVDRVARTTATWRASRGGAHVSGSSSDHHGGDWGPVPRSRARAHPRRPLVASGSQARSSSFSGASAYESDGGYYSPSGGSWQL 501
            LEREHEDLTHEVYELSARLAS RT XXXXXXXXXXXXX   GL P DFERR MDGGAS GASAAASDGSAGH PRRRSQPEESVTVRAVDRVA+TTATWRAS GGAHVSGSSS+H  G WGPVPR+RA+ H RRPL+ASGS ARSSS SGASAY+SDGG YSPSGG WQL
Sbjct:  428 LEREHEDLTHEVYELSARLASSRTXXXXXXXXXXXXXXXAAGLDPIDFERRHMDGGASVGASAAASDGSAGHWPRRRSQPEESVTVRAVDRVAKTTATWRASGGGAHVSGSSSEHPDGYWGPVPRNRAQTHARRPLIASGSGARSSSVSGASAYDSDGGCYSPSGGPWQL 597
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig100.61.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.550e-9292.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.170e-7084.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig100contigEcto-sp9_F_contig100:51286..51837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001540.1
Exons1
Model size553
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928193.6311305-CDS-Ecto-sp9_F_contig100:51285..518371622928193.6311305-CDS-Ecto-sp9_F_contig100:51285..51837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 51286..51837 +
1692277788.4890997-CDS-Ecto-sp9_F_contig100:51285..518371692277788.4890997-CDS-Ecto-sp9_F_contig100:51285..51837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 51286..51837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig100.61.1prot_Ecto-sp9_F_contig100.61.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig100 51286..51837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig100.61.1

>prot_Ecto-sp9_F_contig100.61.1 ID=prot_Ecto-sp9_F_contig100.61.1|Name=mRNA_Ecto-sp9_F_contig100.61.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=184bp
LEREHEDLTHEVYELSARLASCRTTTTTTSSTAAAAAAGLGPSDFERRQM
DGGASFGASAAASDGSAGHLPRRRSQPEESVTVRAVDRVARTTATWRASR
GGAHVSGSSSDHHGGDWGPVPRSRARAHPRRPLVASGSQARSSSFSGASA
YESDGGYYSPSGGSWQLVGPPKRHSRAPDELPGH
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mRNA from alignment at Ecto-sp9_F_contig100:51286..51837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig100.61.1 ID=mRNA_Ecto-sp9_F_contig100.61.1|Name=mRNA_Ecto-sp9_F_contig100.61.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:51286..51837+ (Ectocarpus species9 EcSCA_722f female)
CTGGAGAGGGAGCACGAGGACCTCACCCACGAGGTCTACGAGCTGAGCGC
GCGGCTGGCTTCCTGCAGGACGACGACGACCACCACTTCTAGCACCGCCG
CCGCCGCCGCCGCCGGTCTGGGCCCCTCCGACTTCGAGAGGCGGCAAATG
GACGGAGGAGCGTCCTTCGGCGCCTCGGCGGCGGCCTCGGATGGTTCTGC
TGGCCATTTGCCCAGGAGGAGGAGCCAGCCGGAGGAATCGGTGACTGTCA
GGGCGGTCGACAGGGTAGCGAGGACCACGGCGACTTGGCGGGCATCCCGT
GGCGGCGCTCACGTTAGCGGCAGCAGTAGCGACCATCACGGCGGTGATTG
GGGCCCCGTACCCCGGAGCAGGGCCCGGGCGCATCCACGGCGCCCCCTAG
TCGCTTCTGGTAGCCAGGCCCGTTCGTCTAGCTTCTCGGGGGCTTCCGCG
TACGAGTCGGATGGTGGCTACTACTCTCCCAGCGGTGGTTCATGGCAGTT
GGTGGGTCCGCCGAAGCGGCACTCGCGAGCGCCGGACGAGCTCCCCGGTC
AC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig100:51286..51837+

>mRNA_Ecto-sp9_F_contig100.61.1 ID=mRNA_Ecto-sp9_F_contig100.61.1|Name=mRNA_Ecto-sp9_F_contig100.61.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1104bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:51286..51837+ (Ectocarpus species9 EcSCA_722f female)
CTGGAGAGGGAGCACGAGGACCTCACCCACGAGGTCTACGAGCTGAGCGC
GCGGCTGGCTTCCTGCAGGACGACGACGACCACCACTTCTAGCACCGCCG
CCGCCGCCGCCGCCGGTCTGGGCCCCTCCGACTTCGAGAGGCGGCAAATG
GACGGAGGAGCGTCCTTCGGCGCCTCGGCGGCGGCCTCGGATGGTTCTGC
TGGCCATTTGCCCAGGAGGAGGAGCCAGCCGGAGGAATCGGTGACTGTCA
GGGCGGTCGACAGGGTAGCGAGGACCACGGCGACTTGGCGGGCATCCCGT
GGCGGCGCTCACGTTAGCGGCAGCAGTAGCGACCATCACGGCGGTGATTG
GGGCCCCGTACCCCGGAGCAGGGCCCGGGCGCATCCACGGCGCCCCCTAG
TCGCTTCTGGTAGCCAGGCCCGTTCGTCTAGCTTCTCGGGGGCTTCCGCG
TACGAGTCGGATGGTGGCTACTACTCTCCCAGCGGTGGTTCATGGCAGTT
GGTGGGTCCGCCGAAGCGGCACTCGCGAGCGCCGGACGAGCTCCCCGGTC
ACCTGGAGAGGGAGCACGAGGACCTCACCCACGAGGTCTACGAGCTGAGC
GCGCGGCTGGCTTCCTGCAGGACGACGACGACCACCACTTCTAGCACCGC
CGCCGCCGCCGCCGCCGGTCTGGGCCCCTCCGACTTCGAGAGGCGGCAAA
TGGACGGAGGAGCGTCCTTCGGCGCCTCGGCGGCGGCCTCGGATGGTTCT
GCTGGCCATTTGCCCAGGAGGAGGAGCCAGCCGGAGGAATCGGTGACTGT
CAGGGCGGTCGACAGGGTAGCGAGGACCACGGCGACTTGGCGGGCATCCC
GTGGCGGCGCTCACGTTAGCGGCAGCAGTAGCGACCATCACGGCGGTGAT
TGGGGCCCCGTACCCCGGAGCAGGGCCCGGGCGCATCCACGGCGCCCCCT
AGTCGCTTCTGGTAGCCAGGCCCGTTCGTCTAGCTTCTCGGGGGCTTCCG
CGTACGAGTCGGATGGTGGCTACTACTCTCCCAGCGGTGGTTCATGGCAG
TTGGTGGGTCCGCCGAAGCGGCACTCGCGAGCGCCGGACGAGCTCCCCGG
TCAC
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