mRNA_Ecto-sp9_F_contig1.11.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1.11.1
Unique NamemRNA_Ecto-sp9_F_contig1.11.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1.11.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I538_OSTTA)

HSP 1 Score: 619 bits (1597), Expect = 5.580e-221
Identity = 308/324 (95.06%), Postives = 315/324 (97.22%), Query Frame = 1 
Query:    1 MTTAAEIQFRLAGIESLSDTETHVAAKAVRLAAPAFNAAGDLFREQYVAVLKSDQLLGFSNRGSDPDLSFRWVELSSEKRQTLAVAGRDQEVLLMALLMALEYHEAVKVRVQHCTVRAKLLREAFDIAVTAFPGLERPGWVPAMPELLNGQMSITPPASIMSNICEYTVQLDEAATSYDACVARVQRLVKLYRATEHARSDAGKYRNFVLSSPFGSTLLWSNVKHDVPRITLAYRDGEKCTFPTKNVRCILPLAALLVLGSNMSATLSVQFHGEMPSEEVMLTASQLARQVRPGLVCPSWFPDNCFYGRCGEPINVPKHLDFRA 972
            M+ A EIQFRL G+E+LSDTETHVAAKAVRLAAPAFNAAGDLFREQYVAVLKSDQLLGFSNRGSDPDLSFRWVEL+SEKRQTLAVAGRDQEVLLMALLMALEYHEAVKVRVQHCTVRAKLLREAFDIAVTAFPGLERPGWVPAMPELLNGQMSITPPASIMSNICEYTVQLDEAATSYD CVARVQRLVKLYR TEHARSDAGKYRNFVLSSPFGSTLLWSNVKHDVPRI LAYRDGE CTFPTKN+RCILPLAALLVLGSN +ATLSV+FHGEMPSEEVML ASQLARQVRPGLVCPSWFPDNCFYGRCGEPINVPKHLDFRA
Sbjct:  170 MSNAGEIQFRLYGVETLSDTETHVAAKAVRLAAPAFNAAGDLFREQYVAVLKSDQLLGFSNRGSDPDLSFRWVELASEKRQTLAVAGRDQEVLLMALLMALEYHEAVKVRVQHCTVRAKLLREAFDIAVTAFPGLERPGWVPAMPELLNGQMSITPPASIMSNICEYTVQLDEAATSYDDCVARVQRLVKLYRGTEHARSDAGKYRNFVLSSPFGSTLLWSNVKHDVPRIILAYRDGEVCTFPTKNIRCILPLAALLVLGSNTAATLSVRFHGEMPSEEVMLAASQLARQVRPGLVCPSWFPDNCFYGRCGEPINVPKHLDFRA 493
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.11.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.580e-22195.06protein n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1contigEcto-sp9_F_contig1:64667..65664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size975
Cds size975
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.0664046-CDS-Ecto-sp9_F_contig1:64666..651391622928187.0664046-CDS-Ecto-sp9_F_contig1:64666..65139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 64667..65139 +
1692277785.0150034-CDS-Ecto-sp9_F_contig1:64666..651391692277785.0150034-CDS-Ecto-sp9_F_contig1:64666..65139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 64667..65139 +
1622928187.0826352-CDS-Ecto-sp9_F_contig1:65162..656641622928187.0826352-CDS-Ecto-sp9_F_contig1:65162..65664Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 65163..65664 +
1692277785.0284336-CDS-Ecto-sp9_F_contig1:65162..656641692277785.0284336-CDS-Ecto-sp9_F_contig1:65162..65664Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 65163..65664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1.11.1prot_Ecto-sp9_F_contig1.11.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1 64667..65664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1.11.1

>prot_Ecto-sp9_F_contig1.11.1 ID=prot_Ecto-sp9_F_contig1.11.1|Name=mRNA_Ecto-sp9_F_contig1.11.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=325bp
MTTAAEIQFRLAGIESLSDTETHVAAKAVRLAAPAFNAAGDLFREQYVAV
LKSDQLLGFSNRGSDPDLSFRWVELSSEKRQTLAVAGRDQEVLLMALLMA
LEYHEAVKVRVQHCTVRAKLLREAFDIAVTAFPGLERPGWVPAMPELLNG
QMSITPPASIMSNICEYTVQLDEAATSYDACVARVQRLVKLYRATEHARS
DAGKYRNFVLSSPFGSTLLWSNVKHDVPRITLAYRDGEKCTFPTKNVRCI
LPLAALLVLGSNMSATLSVQFHGEMPSEEVMLTASQLARQVRPGLVCPSW
FPDNCFYGRCGEPINVPKHLDFRA*
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mRNA from alignment at Ecto-sp9_F_contig1:64667..65664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1.11.1 ID=mRNA_Ecto-sp9_F_contig1.11.1|Name=mRNA_Ecto-sp9_F_contig1.11.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=998bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:64667..65664+ (Ectocarpus species9 EcSCA_722f female)
ATGACAACAGCTGCAGAAATTCAGTTCCGGCTGGCCGGTATCGAATCACT
CTCCGATACGGAGACTCACGTGGCGGCTAAAGCCGTCCGGCTGGCGGCGC
CTGCCTTTAATGCAGCGGGTGATCTCTTCAGAGAGCAGTACGTGGCCGTC
CTTAAGTCTGACCAGCTGCTGGGCTTTTCCAACCGGGGTTCGGACCCTGA
CCTGTCTTTTCGCTGGGTCGAGCTTTCAAGCGAAAAACGCCAGACGCTGG
CGGTTGCAGGCCGGGATCAAGAAGTCCTACTGATGGCGCTGCTGATGGCT
CTGGAGTACCACGAAGCTGTGAAGGTGCGAGTGCAGCACTGCACCGTGCG
GGCCAAGCTGCTTCGAGAAGCCTTCGATATCGCGGTAACCGCCTTCCCCG
GCCTTGAAAGGCCCGGGTGGGTTCCGGCCATGCCTGAACTGCTGAATGGC
CAGATGAGCATTACACCGCCAGCGTCTTCTGATTTCCGAGCTTGAGGTCA
ATCATGTCCAATATCTGCGAGTACACCGTTCAGCTGGATGAGGCGGCGAC
TTCATACGATGCTTGCGTTGCCCGGGTTCAGCGGCTTGTGAAGCTCTACC
GTGCCACTGAGCACGCACGATCCGACGCTGGGAAATATCGGAATTTCGTT
CTGTCATCGCCTTTCGGGTCAACTCTGCTGTGGTCAAACGTAAAGCATGA
CGTTCCGCGAATTACCCTCGCCTATCGCGACGGTGAGAAATGTACGTTTC
CGACCAAAAACGTTCGATGCATTTTGCCGTTGGCTGCGCTGCTGGTGCTC
GGTAGCAATATGTCGGCCACCTTATCGGTGCAGTTCCATGGTGAGATGCC
GTCTGAGGAAGTGATGTTGACTGCGAGTCAATTGGCTCGGCAGGTGCGTC
CGGGGCTGGTCTGCCCTTCGTGGTTTCCCGACAATTGTTTCTATGGCCGC
TGCGGCGAGCCCATCAATGTTCCCAAACATCTCGATTTCCGGGCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:64667..65664+

>mRNA_Ecto-sp9_F_contig1.11.1 ID=mRNA_Ecto-sp9_F_contig1.11.1|Name=mRNA_Ecto-sp9_F_contig1.11.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1950bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:64667..65664+ (Ectocarpus species9 EcSCA_722f female)
ATGACAACAGCTGCAGAAATTCAGTTCCGGCTGGCCGGTATCGAATCACT
CTCCGATACGGAGACTCACGTGGCGGCTAAAGCCGTCCGGCTGGCGGCGC
CTGCCTTTAATGCAGCGGGTGATCTCTTCAGAGAGCAGTACGTGGCCGTC
CTTAAGTCTGACCAGCTGCTGGGCTTTTCCAACCGGGGTTCGGACCCTGA
CCTGTCTTTTCGCTGGGTCGAGCTTTCAAGCGAAAAACGCCAGACGCTGG
CGGTTGCAGGCCGGGATCAAGAAGTCCTACTGATGGCGCTGCTGATGGCT
CTGGAGTACCACGAAGCTGTGAAGGTGCGAGTGCAGCACTGCACCGTGCG
GGCCAAGCTGCTTCGAGAAGCCTTCGATATCGCGGTAACCGCCTTCCCCG
GCCTTGAAAGGCCCGGGTGGGTTCCGGCCATGCCTGAACTGCTGAATGGC
CAGATGAGCATTACACCGCCAGCATGACAACAGCTGCAGAAATTCAGTTC
CGGCTGGCCGGTATCGAATCACTCTCCGATACGGAGACTCACGTGGCGGC
TAAAGCCGTCCGGCTGGCGGCGCCTGCCTTTAATGCAGCGGGTGATCTCT
TCAGAGAGCAGTACGTGGCCGTCCTTAAGTCTGACCAGCTGCTGGGCTTT
TCCAACCGGGGTTCGGACCCTGACCTGTCTTTTCGCTGGGTCGAGCTTTC
AAGCGAAAAACGCCAGACGCTGGCGGTTGCAGGCCGGGATCAAGAAGTCC
TACTGATGGCGCTGCTGATGGCTCTGGAGTACCACGAAGCTGTGAAGGTG
CGAGTGCAGCACTGCACCGTGCGGGCCAAGCTGCTTCGAGAAGCCTTCGA
TATCGCGGTAACCGCCTTCCCCGGCCTTGAAAGGCCCGGGTGGGTTCCGG
CCATGCCTGAACTGCTGAATGGCCAGATGAGCATTACACCGCCAGCGTCA
ATCATGTCCAATATCTGCGAGTACACCGTTCAGCTGGATGAGGCGGCGAC
TTCATACGATGCTTGCGTTGCCCGGGTTCAGCGGCTTGTGAAGCTCTACC
GTGCCACTGAGCACGCACGATCCGACGCTGGGAAATATCGGAATTTCGTT
CTGTCATCGCCTTTCGGGTCAACTCTGCTGTGGTCAAACGTAAAGCATGA
CGTTCCGCGAATTACCCTCGCCTATCGCGACGGTGAGAAATGTACGTTTC
CGACCAAAAACGTTCGATGCATTTTGCCGTTGGCTGCGCTGCTGGTGCTC
GGTAGCAATATGTCGGCCACCTTATCGGTGCAGTTCCATGGTGAGATGCC
GTCTGAGGAAGTGATGTTGACTGCGAGTCAATTGGCTCGGCAGGTGCGTC
CGGGGCTGGTCTGCCCTTCGTGGTTTCCCGACAATTGTTTCTATGGCCGC
TGCGGCGAGCCCATCAATGTTCCCAAACATCTCGATTTCCGGGCCTGAGT
CAATCATGTCCAATATCTGCGAGTACACCGTTCAGCTGGATGAGGCGGCG
ACTTCATACGATGCTTGCGTTGCCCGGGTTCAGCGGCTTGTGAAGCTCTA
CCGTGCCACTGAGCACGCACGATCCGACGCTGGGAAATATCGGAATTTCG
TTCTGTCATCGCCTTTCGGGTCAACTCTGCTGTGGTCAAACGTAAAGCAT
GACGTTCCGCGAATTACCCTCGCCTATCGCGACGGTGAGAAATGTACGTT
TCCGACCAAAAACGTTCGATGCATTTTGCCGTTGGCTGCGCTGCTGGTGC
TCGGTAGCAATATGTCGGCCACCTTATCGGTGCAGTTCCATGGTGAGATG
CCGTCTGAGGAAGTGATGTTGACTGCGAGTCAATTGGCTCGGCAGGTGCG
TCCGGGGCTGGTCTGCCCTTCGTGGTTTCCCGACAATTGTTTCTATGGCC
GCTGCGGCGAGCCCATCAATGTTCCCAAACATCTCGATTTCCGGGCCTGA
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