mRNA_Ecto-sp8_S_contig102960.487.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102960.487.1
Unique NamemRNA_Ecto-sp8_S_contig102960.487.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: D8LM44_ECTSI (Similar to jouberin isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM44_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.080e-20
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 VNPGFAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRVK 141
            VNPGFAGGATA+SLIRASFSPDGRFVVSGSETGRVRVWE+QEGKRVK
Sbjct:  612 VNPGFAGGATAKSLIRASFSPDGRFVVSGSETGRVRVWESQEGKRVK 658
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A7S2BSZ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BSZ3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   13 FAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRV 138
            F G  T  S+I A FSPDGRFVV+GSE G   VW+A  G R+
Sbjct:  809 FHGSNTRSSMISAVFSPDGRFVVAGSEDGHAHVWDAVSGDRI 850
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A087SIB0_AUXPR (Denticleless protein-like protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIB0_AUXPR)

HSP 1 Score: 49.3 bits (116), Expect = 1.670e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:   13 FAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQEGK 132
            +AG A A   ++A FSPDGRF+ SGS   RV VWE  EG+
Sbjct:  223 YAGHAAASFYVKAGFSPDGRFLASGSSDRRVHVWEGHEGE 262
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A1V9Z811_9STRA (Jouberin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z811_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.290e-5
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 VNPGFAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRV 138
            +N G+ G     SLI++SFSPDGR+VVSGSE G V ++ +  G+R+
Sbjct:  554 LNKGYTGIKCTTSLIKSSFSPDGRYVVSGSEDGAVFMFSSLNGQRI 599
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A7S1X3E5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X3E5_9CHLO)

HSP 1 Score: 47.8 bits (112), Expect = 5.870e-5
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VNPGFAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQ 123
            +N  +AG     + I+++FSPDGRF++SGSE GRV VW+ +
Sbjct:  297 INSQYAGVKCINAPIQSTFSPDGRFIISGSEDGRVYVWDVE 337
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A067CJS3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJS3_SAPPC)

HSP 1 Score: 47.8 bits (112), Expect = 5.880e-5
Identity = 19/46 (41.30%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 VNPGFAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRV 138
            +N G++G     ++++++FSPDGRFV SGSE G V ++ +  G+R+
Sbjct:  546 LNKGYSGLTVTSAMVKSAFSPDGRFVASGSEDGAVYLYSSLNGRRI 591
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A7S2SPM8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPM8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.040e-5
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 VNPGFAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQ 123
            ++ GF G   ++SLIRA FSPDG +V+SG E G+  VW  +
Sbjct:  325 MHQGFIGAPVSQSLIRACFSPDGEYVMSGGEDGKPHVWHTK 365
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A0G4IPK7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IPK7_PLABS)

HSP 1 Score: 47.4 bits (111), Expect = 8.040e-5
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   37 SLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRV 138
            S IRA FSPDG FVVSGSE G+V VW    G+ V
Sbjct:  502 SAIRAQFSPDGAFVVSGSEDGKVHVWRVASGELV 535
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A1V9YPZ2_9STRA (Jouberin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPZ2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.050e-5
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 VNPGFAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRV 138
            +N G+ G   + +L+R++FSPDGRFV SGSE G   ++ +  G+R+
Sbjct:  556 LNKGYCGMTISSTLVRSTFSPDGRFVASGSEDGAAYLFSSLNGQRI 601
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Match: A0A3P3YLQ6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YLQ6_PLABS)

HSP 1 Score: 47.4 bits (111), Expect = 8.050e-5
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   37 SLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRV 138
            S IRA FSPDG FVVSGSE G+V VW    G+ V
Sbjct:  674 SAIRAQFSPDGAFVVSGSEDGKVHVWRVASGELV 707
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102960.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LM44_ECTSI1.080e-2095.74Similar to jouberin isoform 1 n=1 Tax=Ectocarpus s... [more]
A0A7S2BSZ3_9STRA2.560e-657.14Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A087SIB0_AUXPR1.670e-555.00Denticleless protein-like protein n=1 Tax=Auxenoch... [more]
A0A1V9Z811_9STRA2.290e-550.00Jouberin n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
A0A7S1X3E5_9CHLO5.870e-548.78Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A067CJS3_SAPPC5.880e-541.30Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A7S2SPM8_9STRA8.040e-548.78Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A0G4IPK7_PLABS8.040e-564.71Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A1V9YPZ2_9STRA8.050e-543.48Jouberin n=1 Tax=Achlya hypogyna TaxID=1202772 Rep... [more]
A0A3P3YLQ6_PLABS8.050e-564.71Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102960contigEcto-sp8_S_contig102960:71..211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.8
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog2880.D8LM44
Preferred nameAHI1
Model size141
KEGG koko:K11143,ko:K16740
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001654,GO:0001655,GO:0001738,GO:0001750,GO:0001754,GO:0001822,GO:0001947,GO:0002009,GO:0002090,GO:0002092,GO:0002791,GO:0003002,GO:0003007,GO:0003143,GO:0003407,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005911,GO:0005912,GO:0005929,GO:0006355,GO:0006357,GO:0006810,GO:0006903,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009605,GO:0009653,GO:0009790,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010720,GO:0010827,GO:0010829,GO:0010842,GO:0010941,GO:0010975,GO:0010976,GO:0015630,GO:0016043,GO:0016192,GO:0019219,GO:0019222,GO:0021510,GO:0022008,GO:0022406,GO:0022603,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030054,GO:0030100,GO:0030154,GO:0030182,GO:0030856,GO:0030858,GO:0030860,GO:0030862,GO:0030902,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031667,GO:0032094,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034762,GO:0034763,GO:0035050,GO:0035239,GO:0035295,GO:0035844,GO:0035845,GO:0035869,GO:0036038,GO:0036064,GO:0039007,GO:0039008,GO:0039019,GO:0039020,GO:0039022,GO:0039023,GO:0040008,GO:0042221,GO:0042461,GO:0042462,GO:0042670,GO:0042802,GO:0042981,GO:0042995,GO:0043005,GO:0043010,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045807,GO:0045893,GO:0045927,GO:0045935,GO:0045944,GO:0046324,GO:0046325,GO:0046530,GO:0046548,GO:0046549,GO:0048259,GO:0048260,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048546,GO:0048562,GO:0048565,GO:0048568,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048839,GO:0048856,GO:0048869,GO:0050708,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051051,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051960,GO:0051962,GO:0055123,GO:0060041,GO:0060042,GO:0060219,GO:0060255,GO:0060271,GO:0060284,GO:0060322,GO:0060429,GO:0060548,GO:0060562,GO:0060627,GO:0060972,GO:0060993,GO:0061326,GO:0061333,GO:0061371,GO:0065001,GO:0065007,GO:0070121,GO:0070161,GO:0070201,GO:0070727,GO:0070925,GO:0070986,GO:0071599,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072114,GO:0072176,GO:0072178,GO:0072359,GO:0080090,GO:0090087,GO:0090596,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0140056,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:1905330,GO:1905332,GO:1905515,GO:1990403,GO:2000026,GO:2000027,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Cds size141
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143128.2986526-CDS-Ecto-sp8_S_contig102960:70..2111681143128.2986526-CDS-Ecto-sp8_S_contig102960:70..211Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102960 71..211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102960.487.1prot_Ecto-sp8_S_contig102960.487.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102960 71..211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102960.487.1

>prot_Ecto-sp8_S_contig102960.487.1 ID=prot_Ecto-sp8_S_contig102960.487.1|Name=mRNA_Ecto-sp8_S_contig102960.487.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=47bp
VNPGFAGGATAESLIRASFSPDGRFVVSGSETGRVRVWEAQEGKRVK
back to top

mRNA from alignment at Ecto-sp8_S_contig102960:71..211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102960.487.1 ID=mRNA_Ecto-sp8_S_contig102960.487.1|Name=mRNA_Ecto-sp8_S_contig102960.487.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102960:71..211- (Ectocarpus species8 EcLAC_412)
GTGAATCCCGGGTTTGCTGGCGGGGCCACGGCCGAGTCGCTGATCCGGGC
GTCCTTCAGCCCCGACGGGCGTTTCGTTGTATCGGGCTCCGAAACGGGGC
GGGTTCGAGTGTGGGAGGCTCAGGAGGGGAAGAGGGTCAAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102960:71..211-

>mRNA_Ecto-sp8_S_contig102960.487.1 ID=mRNA_Ecto-sp8_S_contig102960.487.1|Name=mRNA_Ecto-sp8_S_contig102960.487.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102960:71..211- (Ectocarpus species8 EcLAC_412)
GTGAATCCCGGGTTTGCTGGCGGGGCCACGGCCGAGTCGCTGATCCGGGC
GTCCTTCAGCCCCGACGGGCGTTTCGTTGTATCGGGCTCCGAAACGGGGC
GGGTTCGAGTGTGGGAGGCTCAGGAGGGGAAGAGGGTCAAA
back to top