mRNA_Ecto-sp8_S_contig10286.476.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10286.476.1
Unique NamemRNA_Ecto-sp8_S_contig10286.476.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10286.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10286contigEcto-sp8_S_contig10286:161..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size526
Hectar predicted targeting categorysignal anchor
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.5790093-UTR-Ecto-sp8_S_contig10286:160..1991681143127.5790093-UTR-Ecto-sp8_S_contig10286:160..199Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10286 161..199 +
1681143127.605067-UTR-Ecto-sp8_S_contig10286:511..6861681143127.605067-UTR-Ecto-sp8_S_contig10286:511..686Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10286 512..686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.587672-CDS-Ecto-sp8_S_contig10286:199..5111681143127.587672-CDS-Ecto-sp8_S_contig10286:199..511Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10286 200..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10286.476.1prot_Ecto-sp8_S_contig10286.476.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10286 200..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10286.476.1

>prot_Ecto-sp8_S_contig10286.476.1 ID=prot_Ecto-sp8_S_contig10286.476.1|Name=mRNA_Ecto-sp8_S_contig10286.476.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=104bp
MHDANERVFASFWCIHLFLCVCVQLCTYPVLFGRVLCLCETECYPSWMLF
FCSSVLVLWCLCETDACVWWKCRCDAASGNVLPKFGSSPSIVSSYSLACQ
GVP*
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mRNA from alignment at Ecto-sp8_S_contig10286:161..686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10286.476.1 ID=mRNA_Ecto-sp8_S_contig10286.476.1|Name=mRNA_Ecto-sp8_S_contig10286.476.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=526bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10286:161..686+ (Ectocarpus species8 EcLAC_412)
GTGGGATCGGCGGCTTTGCTTTTGGCGGTCGTTGTGAGGATGCATGACGC
GAACGAGCGTGTTTTTGCTTCGTTTTGGTGCATACACTTATTTTTATGTG
TGTGTGTGCAACTATGTACATACCCGGTGTTGTTTGGTAGAGTTCTGTGT
TTGTGCGAGACGGAATGTTACCCGTCGTGGATGTTGTTCTTTTGTTCTTC
TGTTCTTGTTTTGTGGTGCTTGTGCGAGACGGACGCGTGTGTGTGGTGGA
AGTGCCGCTGCGATGCCGCCTCCGGAAATGTTCTGCCCAAGTTCGGCAGC
TCCCCGTCTATTGTAAGCTCCTACTCGCTCGCGTGTCAGGGTGTGCCTTA
AGTGATACCCACGGTGGATTTGTAGATAGATATTATACCAGCACGGGTAA
ATCGGTGTATTGGAAAAGTGTGGGACGAGTTGGTTTTATCGTTCGGTCTT
GAACCAACACATTGATGTGGGTGTTTCTACACGCACCAACTGATTTATGA
CCGACCGACTAATAATGCAAGATGCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10286:161..686+

>mRNA_Ecto-sp8_S_contig10286.476.1 ID=mRNA_Ecto-sp8_S_contig10286.476.1|Name=mRNA_Ecto-sp8_S_contig10286.476.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10286:161..686+ (Ectocarpus species8 EcLAC_412)
ATGCATGACGCGAACGAGCGTGTTTTTGCTTCGTTTTGGTGCATACACTT
ATTTTTATGTGTGTGTGTGCAACTATGTACATACCCGGTGTTGTTTGGTA
GAGTTCTGTGTTTGTGCGAGACGGAATGTTACCCGTCGTGGATGTTGTTC
TTTTGTTCTTCTGTTCTTGTTTTGTGGTGCTTGTGCGAGACGGACGCGTG
TGTGTGGTGGAAGTGCCGCTGCGATGCCGCCTCCGGAAATGTTCTGCCCA
AGTTCGGCAGCTCCCCGTCTATTGTAAGCTCCTACTCGCTCGCGTGTCAG
GGTGTGCCTTAA
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