mRNA_Ecto-sp8_S_contig1027.452.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1027.452.1
Unique NamemRNA_Ecto-sp8_S_contig1027.452.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1027.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1027contigEcto-sp8_S_contig1027:13231..13413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_002890.1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.955014-CDS-Ecto-sp8_S_contig1027:13230..134131681143125.955014-CDS-Ecto-sp8_S_contig1027:13230..13413Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1027 13231..13413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1027.452.1prot_Ecto-sp8_S_contig1027.452.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1027 13231..13413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1027.452.1

>prot_Ecto-sp8_S_contig1027.452.1 ID=prot_Ecto-sp8_S_contig1027.452.1|Name=mRNA_Ecto-sp8_S_contig1027.452.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=61bp
VAAPFLISTCLATGSNETLDYKDLTSYHATRLSTDRRRNAQKRKHSLALL
DLQQYSSTAVQ
back to top

mRNA from alignment at Ecto-sp8_S_contig1027:13231..13413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1027.452.1 ID=mRNA_Ecto-sp8_S_contig1027.452.1|Name=mRNA_Ecto-sp8_S_contig1027.452.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1027:13231..13413+ (Ectocarpus species8 EcLAC_412)
GTTGCGGCACCATTCCTTATAAGCACATGTCTCGCAACAGGTAGCAATGA
GACCCTTGATTATAAGGACCTTACCTCCTACCACGCCACCAGGCTGAGCA
CAGACAGGCGGCGAAACGCACAAAAGCGAAAGCATTCATTGGCATTATTA
GACCTACAGCAGTACAGCAGTACAGCAGTACAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1027:13231..13413+

>mRNA_Ecto-sp8_S_contig1027.452.1 ID=mRNA_Ecto-sp8_S_contig1027.452.1|Name=mRNA_Ecto-sp8_S_contig1027.452.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1027:13231..13413+ (Ectocarpus species8 EcLAC_412)
GTTGCGGCACCATTCCTTATAAGCACATGTCTCGCAACAGGTAGCAATGA
GACCCTTGATTATAAGGACCTTACCTCCTACCACGCCACCAGGCTGAGCA
CAGACAGGCGGCGAAACGCACAAAAGCGAAAGCATTCATTGGCATTATTA
GACCTACAGCAGTACAGCAGTACAGCAGTACAG
back to top