mRNA_Ecto-sp8_S_contig102640.441.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102640.441.1
Unique NamemRNA_Ecto-sp8_S_contig102640.441.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: A0A0U2TGG4_ACAPC (60S ribosomal protein L23 n=12 Tax=Neocopepoda TaxID=116569 RepID=A0A0U2TGG4_ACAPC)

HSP 1 Score: 256 bits (653), Expect = 7.550e-86
Identity = 130/140 (92.86%), Postives = 133/140 (95.00%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGGA GAKFRISLA PVGAVMNCADNTG KNL+++AV GIRGRLNRLPAAC GDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDG FIYFEDNAGVIVNNKGEMKG AITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGAVGAKFRISLALPVGAVMNCADNTGAKNLFIMAVGGIRGRLNRLPAACVGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGTFIYFEDNAGVIVNNKGEMKGFAITGPVAKECADLWPRIASNASSIA 140
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: A0A1D2M991_ORCCI (60S ribosomal protein L23 n=2 Tax=Hexapoda TaxID=6960 RepID=A0A1D2M991_ORCCI)

HSP 1 Score: 254 bits (650), Expect = 2.160e-85
Identity = 130/140 (92.86%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG AGAKFRISL  PVGAVMNCADNTGGKNL+VIAV GIRGRLNRLPAA SGDM +ATVKKGKPELRKKVMPAVVIRQRK FRRKDG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGTAGAKFRISLGLPVGAVMNCADNTGGKNLFVIAVQGIRGRLNRLPAAASGDMFVATVKKGKPELRKKVMPAVVIRQRKAFRRKDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: A0A6P8NHK6_9HYME (60S ribosomal protein L23 n=52 Tax=Pterygota TaxID=7496 RepID=A0A6P8NHK6_9HYME)

HSP 1 Score: 251 bits (641), Expect = 5.100e-84
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG+AGAKFRISL  PVGAV+NCADNTG KNLYVIAV GI+GRLNRLPAA SGDM++ATVKKGKPELRKKVMPAV+IRQRK FRRKDG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVIIRQRKPFRRKDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: A0A026X364_OOCBI (60S ribosomal protein L23 n=17 Tax=Pterygota TaxID=7496 RepID=A0A026X364_OOCBI)

HSP 1 Score: 251 bits (640), Expect = 7.250e-84
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG+AGAKFRISL  PVGAV+NCADNTG KNLYVIAV GI+GRLNRLPAA SGDM++ TVKKGKPELRKKVMPAVVIRQRK FRRKDG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVTTVKKGKPELRKKVMPAVVIRQRKPFRRKDGSFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: Q5UAR6_BOMMO (60S ribosomal protein L23 n=25 Tax=Protostomia TaxID=33317 RepID=Q5UAR6_BOMMO)

HSP 1 Score: 250 bits (639), Expect = 1.030e-83
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG+AGAKFRISL  PVGAV+NCADNTG KNLYVIAV GI+GRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: C4WRU2_ACYPI (60S ribosomal protein L23 n=3 Tax=Arthropoda TaxID=6656 RepID=C4WRU2_ACYPI)

HSP 1 Score: 250 bits (639), Expect = 1.030e-83
Identity = 126/140 (90.00%), Postives = 133/140 (95.00%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG+AGAKFRISL  PVGAV+NCADNTG KNL+VIAV GI+GRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVIRQRK FRRKDG F+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLFVIAVQGIKGRLNRLPAAASGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: V5I9Q0_ANOGL (60S ribosomal protein L23 (Fragment) n=5 Tax=cellular organisms TaxID=131567 RepID=V5I9Q0_ANOGL)

HSP 1 Score: 250 bits (639), Expect = 1.260e-83
Identity = 128/139 (92.09%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI 420
            MSKRGRGG+AGAKFRISLA PVGAV+NCADNTG KNLYVIAV GI GRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVIRQRK FRRKDG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI
Sbjct:    7 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLYVIAVQGIGGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI 145
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: E0VVN2_PEDHC (60S ribosomal protein L23 n=17 Tax=Protostomia TaxID=33317 RepID=E0VVN2_PEDHC)

HSP 1 Score: 250 bits (638), Expect = 1.460e-83
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG+AGAKFRISL  PVGAV+NCADNTG KNLYVIAV GI+GRLNRLPAA SGDM +ATVKKGKPELRKKVMPAVVIRQRK FRRKDG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
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BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: A0A6P8Z0I4_THRPL (60S ribosomal protein L23 n=3 Tax=Mandibulata TaxID=197563 RepID=A0A6P8Z0I4_THRPL)

HSP 1 Score: 249 bits (637), Expect = 2.080e-83
Identity = 126/140 (90.00%), Postives = 133/140 (95.00%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG++GAKFRISL  PVGAV+NCADNTG KNLYVIAV+GI GRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVIRQRK FRRKDG F+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIGGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGTFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Match: RL23_DROME (60S ribosomal protein L23 n=76 Tax=Arthropoda TaxID=6656 RepID=RL23_DROME)

HSP 1 Score: 248 bits (634), Expect = 5.960e-83
Identity = 127/140 (90.71%), Postives = 130/140 (92.86%), Query Frame = 1 
Query:    4 MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLNRLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 423
            MSKRGRGG AG KFRISL  PVGAVMNCADNTG KNLYVIAV+GIRGRLNRLPAA  GDM +ATVKKGKPELRKKVMPAVVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA
Sbjct:    1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102640.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2TGG4_ACAPC7.550e-8692.8660S ribosomal protein L23 n=12 Tax=Neocopepoda Tax... [more]
A0A1D2M991_ORCCI2.160e-8592.8660S ribosomal protein L23 n=2 Tax=Hexapoda TaxID=6... [more]
A0A6P8NHK6_9HYME5.100e-8490.7160S ribosomal protein L23 n=52 Tax=Pterygota TaxID... [more]
A0A026X364_OOCBI7.250e-8490.7160S ribosomal protein L23 n=17 Tax=Pterygota TaxID... [more]
Q5UAR6_BOMMO1.030e-8390.7160S ribosomal protein L23 n=25 Tax=Protostomia Tax... [more]
C4WRU2_ACYPI1.030e-8390.0060S ribosomal protein L23 n=3 Tax=Arthropoda TaxID... [more]
V5I9Q0_ANOGL1.260e-8392.0960S ribosomal protein L23 (Fragment) n=5 Tax=cellu... [more]
E0VVN2_PEDHC1.460e-8391.4360S ribosomal protein L23 n=17 Tax=Protostomia Tax... [more]
A0A6P8Z0I4_THRPL2.080e-8390.0060S ribosomal protein L23 n=3 Tax=Mandibulata TaxI... [more]
RL23_DROME5.960e-8390.7160S ribosomal protein L23 n=76 Tax=Arthropoda TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102640contigEcto-sp8_S_contig102640:46..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score252.7
Seed ortholog evalue1e-64
Seed eggNOG ortholog12957.ACEP19507-PA
Preferred nameRpL23
Model size426
KEGG koko:K02894
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0017022,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Ribosomal protein L14p/L23e
EggNOG OGs39ZWX@33154,3BPE2@33208,3D69J@33213,3SKZJ@50557,41YRZ@6656,46KMC@7399,COG0093@1,KOG0901@2759
Cds size423
COG Functional cat.J
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.347435-UTR-Ecto-sp8_S_contig102640:45..481681143125.347435-UTR-Ecto-sp8_S_contig102640:45..48Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig102640 46..48 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.361907-CDS-Ecto-sp8_S_contig102640:48..4711681143125.361907-CDS-Ecto-sp8_S_contig102640:48..471Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102640 49..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102640.441.1prot_Ecto-sp8_S_contig102640.441.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102640 49..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102640.441.1

>prot_Ecto-sp8_S_contig102640.441.1 ID=prot_Ecto-sp8_S_contig102640.441.1|Name=mRNA_Ecto-sp8_S_contig102640.441.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=141bp
MSKRGRGGAAGAKFRISLACPVGAVMNCADNTGGKNLYVIAVYGIRGRLN
RLPAACSGDMVLATVKKGKPELRKKVMPAVVIRQRKTFRRKDGQFIYFED
NAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIA*
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mRNA from alignment at Ecto-sp8_S_contig102640:46..471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102640.441.1 ID=mRNA_Ecto-sp8_S_contig102640.441.1|Name=mRNA_Ecto-sp8_S_contig102640.441.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102640:46..471+ (Ectocarpus species8 EcLAC_412)
AGGATGTCTAAAAGAGGACGTGGAGGAGCCGCGGGAGCCAAGTTCCGCAT
CTCACTGGCTTGCCCCGTGGGAGCCGTCATGAACTGCGCCGACAACACCG
GTGGAAAGAACCTCTACGTTATCGCCGTGTACGGCATCAGGGGCAGGCTT
AACAGGCTGCCCGCCGCCTGCAGCGGTGACATGGTCCTGGCTACAGTCAA
GAAGGGTAAACCAGAGCTCAGGAAGAAAGTCATGCCAGCCGTCGTCATTC
GCCAGAGGAAGACCTTCAGGAGAAAGGACGGCCAGTTTATCTATTTCGAG
GACAACGCTGGCGTGATCGTGAACAACAAGGGGGAGATGAAGGGGTCCGC
CATCACGGGGCCTGTTGCCAAGGAGTGCGCCGACTTGTGGCCAAGGATCG
CCTCCAATGCTTCCTCGATTGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102640:46..471+

>mRNA_Ecto-sp8_S_contig102640.441.1 ID=mRNA_Ecto-sp8_S_contig102640.441.1|Name=mRNA_Ecto-sp8_S_contig102640.441.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102640:46..471+ (Ectocarpus species8 EcLAC_412)
ATGTCTAAAAGAGGACGTGGAGGAGCCGCGGGAGCCAAGTTCCGCATCTC
ACTGGCTTGCCCCGTGGGAGCCGTCATGAACTGCGCCGACAACACCGGTG
GAAAGAACCTCTACGTTATCGCCGTGTACGGCATCAGGGGCAGGCTTAAC
AGGCTGCCCGCCGCCTGCAGCGGTGACATGGTCCTGGCTACAGTCAAGAA
GGGTAAACCAGAGCTCAGGAAGAAAGTCATGCCAGCCGTCGTCATTCGCC
AGAGGAAGACCTTCAGGAGAAAGGACGGCCAGTTTATCTATTTCGAGGAC
AACGCTGGCGTGATCGTGAACAACAAGGGGGAGATGAAGGGGTCCGCCAT
CACGGGGCCTGTTGCCAAGGAGTGCGCCGACTTGTGGCCAAGGATCGCCT
CCAATGCTTCCTCGATTGCGTGA
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