mRNA_Ecto-sp8_S_contig99759.31854.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99759.31854.1
Unique NamemRNA_Ecto-sp8_S_contig99759.31854.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99759.31854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99759contigEcto-sp8_S_contig99759:1..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size552
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_006400.1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145367.255396-CDS-Ecto-sp8_S_contig99759:0..5521681145367.255396-CDS-Ecto-sp8_S_contig99759:0..552Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99759 1..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99759.31854.1prot_Ecto-sp8_S_contig99759.31854.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99759 1..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99759.31854.1

>prot_Ecto-sp8_S_contig99759.31854.1 ID=prot_Ecto-sp8_S_contig99759.31854.1|Name=mRNA_Ecto-sp8_S_contig99759.31854.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=184bp
LCVVISAVACCQDAISDNDCFENDDFVSFHECTLSLASLEMDGQDECTAL
ACSDTISSSSGSDEDTSSTTPAPAATPAPAAATSISTGSPAEEVDTTSSP
TTVDETMAPTMSRYLSTGDVFTSDDPCTSVTERCNDDEDCSACLLAGVDL
ETEYTDCLTALAPNSYSGATESAVCDAFAATFCC
back to top

mRNA from alignment at Ecto-sp8_S_contig99759:1..552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99759.31854.1 ID=mRNA_Ecto-sp8_S_contig99759.31854.1|Name=mRNA_Ecto-sp8_S_contig99759.31854.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99759:1..552- (Ectocarpus species8 EcLAC_412)
CTCTGCGTGGTGATTTCGGCGGTCGCCTGCTGCCAAGATGCCATCTCCGA
CAACGACTGCTTCGAAAACGACGATTTCGTTTCGTTCCACGAATGTACTC
TTTCGCTCGCCTCCCTAGAGATGGACGGTCAGGACGAGTGCACAGCCCTT
GCGTGCAGTGACACTATCAGCAGCAGCAGCGGCAGCGATGAGGACACGAG
CTCCACGACGCCCGCGCCCGCGGCCACTCCAGCTCCTGCCGCCGCAACAA
GCATATCGACCGGCTCACCCGCGGAGGAGGTGGACACGACATCATCTCCT
ACCACGGTGGACGAGACGATGGCTCCTACCATGTCGAGGTACCTCAGCAC
AGGTGATGTCTTTACGAGTGACGATCCATGCACGAGCGTCACGGAACGAT
GCAACGACGACGAGGACTGCTCCGCGTGCCTTCTCGCGGGAGTCGACCTC
GAAACCGAGTACACGGATTGCCTCACCGCTCTGGCGCCCAACTCTTATTC
CGGTGCCACCGAAAGCGCCGTCTGTGACGCGTTCGCTGCAACCTTTTGCT
GC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99759:1..552-

>mRNA_Ecto-sp8_S_contig99759.31854.1 ID=mRNA_Ecto-sp8_S_contig99759.31854.1|Name=mRNA_Ecto-sp8_S_contig99759.31854.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99759:1..552- (Ectocarpus species8 EcLAC_412)
CTCTGCGTGGTGATTTCGGCGGTCGCCTGCTGCCAAGATGCCATCTCCGA
CAACGACTGCTTCGAAAACGACGATTTCGTTTCGTTCCACGAATGTACTC
TTTCGCTCGCCTCCCTAGAGATGGACGGTCAGGACGAGTGCACAGCCCTT
GCGTGCAGTGACACTATCAGCAGCAGCAGCGGCAGCGATGAGGACACGAG
CTCCACGACGCCCGCGCCCGCGGCCACTCCAGCTCCTGCCGCCGCAACAA
GCATATCGACCGGCTCACCCGCGGAGGAGGTGGACACGACATCATCTCCT
ACCACGGTGGACGAGACGATGGCTCCTACCATGTCGAGGTACCTCAGCAC
AGGTGATGTCTTTACGAGTGACGATCCATGCACGAGCGTCACGGAACGAT
GCAACGACGACGAGGACTGCTCCGCGTGCCTTCTCGCGGGAGTCGACCTC
GAAACCGAGTACACGGATTGCCTCACCGCTCTGGCGCCCAACTCTTATTC
CGGTGCCACCGAAAGCGCCGTCTGTGACGCGTTCGCTGCAACCTTTTGCT
GC
back to top