mRNA_Ecto-sp8_S_contig9962.31832.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9962.31832.1
Unique NamemRNA_Ecto-sp8_S_contig9962.31832.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9962.31832.1 vs. uniprot
Match: D7FXU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU1_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.590e-34
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   91 MAREAFVHGEGSPEGGAAAGEGSTGRGYFTPLWRTKGAHSMAGGLLQPSATAALGATGGIPGSNLVESEG 300
            MAREAFVHGEGSPEGGAAAGEG TGR YFTPLWRTKGAHSMAGGLLQPSATAALGATGGIPGSNLVESEG
Sbjct:    1 MAREAFVHGEGSPEGGAAAGEGGTGRDYFTPLWRTKGAHSMAGGLLQPSATAALGATGGIPGSNLVESEG 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9962.31832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXU1_ECTSI3.590e-3497.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9962contigEcto-sp8_S_contig9962:1168..3911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score134.4
Seed ortholog evalue2.9e-29
Seed eggNOG ortholog2880.D7FXU1
Model size302
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ATP-grasp domain
EggNOG OGs2QUGS@2759,COG0439@1
Cds size300
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145365.8828228-CDS-Ecto-sp8_S_contig9962:1167..13821681145365.8828228-CDS-Ecto-sp8_S_contig9962:1167..1382Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9962 1168..1382 -
1681145365.898969-CDS-Ecto-sp8_S_contig9962:3826..39111681145365.898969-CDS-Ecto-sp8_S_contig9962:3826..3911Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9962 3827..3911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9962.31832.1prot_Ecto-sp8_S_contig9962.31832.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9962 1168..3911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9962.31832.1

>prot_Ecto-sp8_S_contig9962.31832.1 ID=prot_Ecto-sp8_S_contig9962.31832.1|Name=mRNA_Ecto-sp8_S_contig9962.31832.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
PSVCAKQASAKRRTGVVHGCGRLEKSERGSMAREAFVHGEGSPEGGAAAG
EGSTGRGYFTPLWRTKGAHSMAGGLLQPSATAALGATGGIPGSNLVESEG
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mRNA from alignment at Ecto-sp8_S_contig9962:1168..3911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9962.31832.1 ID=mRNA_Ecto-sp8_S_contig9962.31832.1|Name=mRNA_Ecto-sp8_S_contig9962.31832.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2744bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9962:1168..3911- (Ectocarpus species8 EcLAC_412)
CCCTCGGTTTGTGCGAAACAAGCGTCGGCGAAGAGAAGAACGGGAGTGGT
CCACGGCTGCGGACGTCTAGAGAAGAGCGAGAGAGGTGAGCACGAGAGTC
ACGCACACCCGCCCGTGGTGCGGAAAACACGCACCTTCTTGTCAACACCG
AGGTGTGTATGTATGCATACATGCATACAGCAAGCAGTATTTACGTCGGA
TATCTTTCGCGTATGGTGCTTATCTGATCCGGGATCAGCTAGCTCAAGAC
TGCAGCTGCAGCACAGCAGTAGCTTCTCGTGTCCTTCTTGTGTGGCAGCA
CTCTCCCTTCTCCCCCTGCCTCAGGTTTTGGGCTGCTACAACGCTCGTCA
CTCCTCATGAAAATATTTGGATGTAATCGCGTGCGAATGGATCTTGTGCT
CTCTCACGCGTGGTGCCCAGCCAGCGAGGGTGGTTGACACCTACATGTAA
TGGCCGACGCACGCGCCATCCATTATTTGTCGGACAAGGGTGGAGGGCTA
CGAAGCAACGTCGGCATATCCTTTAGGTTGTGTGTTCATGCTGATTTTCT
AGGAATAAATGGTGTGCTGTGTACACACATAACACGTGGTGAGCCTTTCG
ACCAACAGTCTGCCGACAGCTGCTACCACTGCTGCTGCTGTAGACTAGGT
CGGCGACACGACACGCGCAATTGCACCGCGTTTGTTTTGAGTCACAACTC
AGCATCAGGCGTTTCGCCTCACTCCGCGCTGTCACTGCGATGTAGCTCTC
GTTGATGGCTTTACATGGCTTTTGAGTCAGGGTCGGCGTCCGGAGAGTGG
TCCTGTTTTTTCGCGATCCAAGTAGGCTGACAGAAATCGCGTCCGGTCCT
TCGGGACTTGGGACAGATTGTAGATGTTAGATAGATGTTCCGATTCACTG
GACAGAATCGCACGGCAAAAAACCGATTTGTATCGATAGGAATCTATAGC
AGCCCCCATCGCCACCCGTCCTCCAGCACTGCATCTCCGGAAAAGACTGC
AACGTTTTGTCTTTTCCAGCGATGGTGCTGCGGGGACTTATTCCCCCCCC
CCCCGTTATTGCTACCAGTCATGTGTACTGCTACTGTTGTACTTTTACGC
CTCCAAATATCCACCACGTCCGTATCGGGTGATTGCGCCGCAAAATGTGG
CTGTTGGTGTTGTAGCTGCGTTACACGGCTGGTGCAGTCGCGCGGGGCCT
CTCCTGTGCGCCTCGGCTGGCATCCTCCTTCGTCATCATCTTGCGAGGCG
TAGCACCGCACCATTTGGCGGTGGGGCAAGACGTGGTTAGACACGAATGA
ATGCCTCCCTGCTGTGTACAGATAGACAGATAGACATGTACAGGTAAGAC
AAGATGTTGTAGCGCCCGAAGTTCATGCTCAACACTGCAGAAGTCTGGTA
AAACATTCCACGACCTTGAGCACCAATTGTGAACCCGTTTGAGAACGCGT
ACAATAAACCTACATGACGGCCAATCGCAGTCCACATTAGCAACTGCGAA
CCTCAGCAATCGCCCATACTAGAGGTTTTAGAGTGCGAGTGCTGTTGGTA
TTTTTATATATTGTCTCGATCAAATGGTCTCACGCGCGGTATGATGTGAT
ACGTATATAGCACCGGTGACAGACTGCAGCAATTGTTAGTTGCCGAGCTG
GATCTTTGAGCGAACGGCGGAATGTGCATCTCGCTTGCGCGCGCGGATGA
CTGCCGTGTGGCTGGATCGATGCGTGCGTGAAACAAAGACGGAGTGTGTG
CGAGTTGCAACCCGAGAGCAGTGCGCGCAGCAGCGTCAGCGGGAGCACTA
CTAAGCAGAGGTGCACATGATCGAATGGCCACAGAAGACAGTCAAGTGCA
CATTAAATTCAAACGATTTACGTAGGCCTGGGGTGCGCAGAGAGGGCAGA
CCGTCGATATGCTGGCCTGCGTTGTGCGAGCGAAGAAATCCACCATTCCA
AAACCAAGTGAAGAAACAGCTGCTGGCTTCTACTCTAGGTGCGCCGGAGA
GCAATCAATTTCCCGCGATTCTGGCGAAAACATGAAACGAACAAAGGTTG
GACTCGAGCACACTATCTACCGTTACATGTGTAGTAAATACTGCTGTACT
ACTGCTGTATGCTGTGAAGTTCCTGCTGGCAGGCGCGGATGGATCACTCG
CAGATGCATTTATGTATTGCATGCACATTTTGGGTGCTCTCTCGTTAATA
TCTCATCTCGGCAACAACTCCTGCTCTTCCGCATTCCCCGAACATGACGT
TTTGGCCCAGGCTACAATGTCTGGAATTTCCACGTCATGTTTTTTCTCGG
CCAGTTCGGAAACGACCCCCGCAGAACGAGAAATCAGAAGGCTGTTGTTT
CCATCCACGCATTTTCTTTTTTTTTATCCTCGAGATTCCCATATCTTTTA
GATATATTCCCCTCCCTTCGTTGAAAGCAACTATAATACATCGGTGACGA
CCTCACACGCCCTCCCTCCCTGCCTTGTGACCCTCCCAACCGAAACGCTC
CACCCGCTTACGCCCGCTTACAGGAACAGGCAGCATGGCACGCGAGGCGT
TCGTGCACGGGGAAGGCAGCCCCGAGGGCGGCGCAGCGGCAGGCGAGGGG
AGCACGGGCCGGGGCTACTTCACCCCGCTGTGGAGGACGAAGGGCGCGCA
CTCCATGGCGGGCGGGCTGCTGCAGCCCTCCGCTACTGCTGCTCTCGGAG
CTACGGGGGGCATCCCCGGGTCTAACCTGGTGGAGAGCGAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9962:1168..3911-

>mRNA_Ecto-sp8_S_contig9962.31832.1 ID=mRNA_Ecto-sp8_S_contig9962.31832.1|Name=mRNA_Ecto-sp8_S_contig9962.31832.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9962:1168..3911- (Ectocarpus species8 EcLAC_412)
CCCTCGGTTTGTGCGAAACAAGCGTCGGCGAAGAGAAGAACGGGAGTGGT
CCACGGCTGCGGACGTCTAGAGAAGAGCGAGAGAGGCAGCATGGCACGCG
AGGCGTTCGTGCACGGGGAAGGCAGCCCCGAGGGCGGCGCAGCGGCAGGC
GAGGGGAGCACGGGCCGGGGCTACTTCACCCCGCTGTGGAGGACGAAGGG
CGCGCACTCCATGGCGGGCGGGCTGCTGCAGCCCTCCGCTACTGCTGCTC
TCGGAGCTACGGGGGGCATCCCCGGGTCTAACCTGGTGGAGAGCGAGGGC
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