mRNA_Ecto-sp8_S_contig99331.31794.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99331.31794.1
Unique NamemRNA_Ecto-sp8_S_contig99331.31794.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99331.31794.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.570e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 DVPTKQFIMSLDARLACVVSDLDATHVFVKKDSIKEIQRELEQLHEKNVYVRPRT 165
            DVPTKQFIMSLDARLACVVSDLDATHVFVKKDS+KEIQRELEQLHEKNVYVRPRT
Sbjct:   16 DVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99331.31794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G710_ECTSI1.570e-3098.18General transcription and DNA repair factor IIH su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99331contigEcto-sp8_S_contig99331:2..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145363.1046023-UTR-Ecto-sp8_S_contig99331:1..251681145363.1046023-UTR-Ecto-sp8_S_contig99331:1..25Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99331 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145363.121155-CDS-Ecto-sp8_S_contig99331:25..1141681145363.121155-CDS-Ecto-sp8_S_contig99331:25..114Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99331 26..114 +
1681145363.135901-CDS-Ecto-sp8_S_contig99331:479..5341681145363.135901-CDS-Ecto-sp8_S_contig99331:479..534Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99331 480..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99331.31794.1prot_Ecto-sp8_S_contig99331.31794.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99331 26..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99331.31794.1

>prot_Ecto-sp8_S_contig99331.31794.1 ID=prot_Ecto-sp8_S_contig99331.31794.1|Name=mRNA_Ecto-sp8_S_contig99331.31794.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
MSLDARLACVVSDLDATHVFVKKDSIKEIQRELEQLHEKNVYVRPRT*
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mRNA from alignment at Ecto-sp8_S_contig99331:2..534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99331.31794.1 ID=mRNA_Ecto-sp8_S_contig99331.31794.1|Name=mRNA_Ecto-sp8_S_contig99331.31794.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=533bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99331:2..534+ (Ectocarpus species8 EcLAC_412)
GATGTGCCCACGAAGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTG
CGTGGTGTCGGATCTGGACGCCACACATGTCTTCGTGAAGAAAGACAGCA
TCAAAGAGATACAGTGAGTGCTATCTGCCCACCTGATTTTCTGTACACGT
TTGGCAGGAACCGCCTAGGAGAATGCGCTTGTGTCGGGCTAGAATTAAGC
GACGCTCTTGGAGTTGGTTTAGTTCTATATGTTTGTGTAATATTTTCACG
AAAGTGATGCCGATGTCACGGGCTGCTCCACATTGTATTGGCTGTCCTCC
CCATCTTTTGTCCGGAAGTATTTCTCGACAATGTTGTTGATTTTGGGGTG
TGTTGATGGCGGAGGTTTGGAGGCGAGGGAAGGGCGAAATGACCACATCC
GGCCGCCGTGATACTCGCTTCGGGTGTACCTAAACACCAACGAACGTTTT
CCACATACCATGCTTCATCCCTTTTCAGGCGCGAGCTGGAACAGCTGCAC
GAGAAGAATGTTTACGTGCGGCCTCGAACATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99331:2..534+

>mRNA_Ecto-sp8_S_contig99331.31794.1 ID=mRNA_Ecto-sp8_S_contig99331.31794.1|Name=mRNA_Ecto-sp8_S_contig99331.31794.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99331:2..534+ (Ectocarpus species8 EcLAC_412)
ATGAGCCTGGACGCACGGCTGGCGTGCGTGGTGTCGGATCTGGACGCCAC
ACATGTCTTCGTGAAGAAAGACAGCATCAAAGAGATACAGCGCGAGCTGG
AACAGCTGCACGAGAAGAATGTTTACGTGCGGCCTCGAACATAG
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