mRNA_Ecto-sp8_S_contig99092.31759.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99092.31759.1
Unique NamemRNA_Ecto-sp8_S_contig99092.31759.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99092.31759.1 vs. uniprot
Match: D8LD26_ECTSI (Flagellar outer dynein arm-docking complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD26_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.120e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 REAIKSIRHGNELLKSDLAWEARESRFITNPSAAAEIQRLQDQADIYAKKTE 156
            +EAIKSIRHGNELLKSDLAWEARESRFITNPSAAAEIQRLQDQADIYAKKTE
Sbjct:   24 KEAIKSIRHGNELLKSDLAWEARESRFITNPSAAAEIQRLQDQADIYAKKTE 75
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BLAST of mRNA_Ecto-sp8_S_contig99092.31759.1 vs. uniprot
Match: A0A835YL73_9STRA (Flagellar outer dynein arm-docking complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL73_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.420e-10
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   10 IKSIRHGNELLKSDLAWEARESRFITNPSAAAEIQRLQDQADIYAKKTE 156
            I++++  NE +K+DLA E+RESRF+TNP+A   I RLQDQAD+YAKK E
Sbjct:   21 IETVQQSNEQMKTDLARESRESRFVTNPAAMKSIVRLQDQADLYAKKIE 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99092.31759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD26_ECTSI5.120e-2498.08Flagellar outer dynein arm-docking complex n=1 Tax... [more]
A0A835YL73_9STRA1.420e-1061.22Flagellar outer dynein arm-docking complex n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99092contigEcto-sp8_S_contig99092:35..190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.4
Seed ortholog evalue6.3e-20
Seed eggNOG ortholog2880.D8LD26
Preferred nameDC2
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0034622,GO:0035082,GO:0036158,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
EggNOG free text desc.outer dynein arm assembly
EggNOG OGs28K4A@1,2QSIU@2759
Cds size156
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.6876667-CDS-Ecto-sp8_S_contig99092:34..1901681145359.6876667-CDS-Ecto-sp8_S_contig99092:34..190Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99092 35..190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99092.31759.1prot_Ecto-sp8_S_contig99092.31759.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99092 35..190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99092.31759.1

>prot_Ecto-sp8_S_contig99092.31759.1 ID=prot_Ecto-sp8_S_contig99092.31759.1|Name=mRNA_Ecto-sp8_S_contig99092.31759.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
REAIKSIRHGNELLKSDLAWEARESRFITNPSAAAEIQRLQDQADIYAKK
TE
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mRNA from alignment at Ecto-sp8_S_contig99092:35..190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99092.31759.1 ID=mRNA_Ecto-sp8_S_contig99092.31759.1|Name=mRNA_Ecto-sp8_S_contig99092.31759.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99092:35..190- (Ectocarpus species8 EcLAC_412)
AGGGAGGCTATCAAAAGCATTCGTCATGGAAACGAGCTGCTCAAGTCTGA
CCTGGCCTGGGAAGCACGAGAGTCACGATTCATCACCAATCCGTCGGCGG
CTGCAGAGATTCAGAGACTACAGGACCAGGCCGATATCTACGCCAAGAAA
ACGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99092:35..190-

>mRNA_Ecto-sp8_S_contig99092.31759.1 ID=mRNA_Ecto-sp8_S_contig99092.31759.1|Name=mRNA_Ecto-sp8_S_contig99092.31759.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99092:35..190- (Ectocarpus species8 EcLAC_412)
AGGGAGGCTATCAAAAGCATTCGTCATGGAAACGAGCTGCTCAAGTCTGA
CCTGGCCTGGGAAGCACGAGAGTCACGATTCATCACCAATCCGTCGGCGG
CTGCAGAGATTCAGAGACTACAGGACCAGGCCGATATCTACGCCAAGAAA
ACGGAG
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