mRNA_Ecto-sp8_S_contig9862.31683.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9862.31683.1
Unique NamemRNA_Ecto-sp8_S_contig9862.31683.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9862.31683.1 vs. uniprot
Match: D7FYA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.020e-24
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 VACFFSIGVSTCDRNVHQASRVVSRDPPRGELVGFEPVPKLTRGRFCH 144
            VACFFS GV TCDRNVHQASRVVSRDPP GELVGFEPVPKLTRGRF H
Sbjct:    3 VACFFSTGVLTCDRNVHQASRVVSRDPPGGELVGFEPVPKLTRGRFWH 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9862.31683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYA7_ECTSI3.020e-2491.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9862contigEcto-sp8_S_contig9862:367..599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size233
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145354.1904879-UTR-Ecto-sp8_S_contig9862:366..4461681145354.1904879-UTR-Ecto-sp8_S_contig9862:366..446Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9862 367..446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145354.2037597-CDS-Ecto-sp8_S_contig9862:446..5991681145354.2037597-CDS-Ecto-sp8_S_contig9862:446..599Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9862 447..599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9862.31683.1prot_Ecto-sp8_S_contig9862.31683.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9862 447..599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9862.31683.1

>prot_Ecto-sp8_S_contig9862.31683.1 ID=prot_Ecto-sp8_S_contig9862.31683.1|Name=mRNA_Ecto-sp8_S_contig9862.31683.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
VACFFSIGVSTCDRNVHQASRVVSRDPPRGELVGFEPVPKLTRGRFCHEG
*
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mRNA from alignment at Ecto-sp8_S_contig9862:367..599-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9862.31683.1 ID=mRNA_Ecto-sp8_S_contig9862.31683.1|Name=mRNA_Ecto-sp8_S_contig9862.31683.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=233bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9862:367..599- (Ectocarpus species8 EcLAC_412)
GTCGCGTGTTTTTTCAGCATAGGGGTTTCAACGTGTGACCGCAATGTACA
TCAGGCAAGCAGAGTCGTGAGTCGAGATCCCCCTAGAGGCGAGTTGGTCG
GATTTGAACCTGTTCCAAAGCTGACGCGGGGGAGGTTCTGTCACGAAGGT
TGAGGCGTTGTGTAGTTCGCGACCGCCGTGTTCTTTGTTCAGGAATGGCA
CTGATTGTCCCCGCTCGATGCGGCGCATTGTTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9862:367..599-

>mRNA_Ecto-sp8_S_contig9862.31683.1 ID=mRNA_Ecto-sp8_S_contig9862.31683.1|Name=mRNA_Ecto-sp8_S_contig9862.31683.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9862:367..599- (Ectocarpus species8 EcLAC_412)
GTCGCGTGTTTTTTCAGCATAGGGGTTTCAACGTGTGACCGCAATGTACA
TCAGGCAAGCAGAGTCGTGAGTCGAGATCCCCCTAGAGGCGAGTTGGTCG
GATTTGAACCTGTTCCAAAGCTGACGCGGGGGAGGTTCTGTCACGAAGGT
TGA
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