mRNA_Ecto-sp8_S_contig98480.31664.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: UPI000C767CAC (26S proteasome non-ATPase regulatory subunit 10-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C767CAC) HSP 1 Score: 76.6 bits (187), Expect = 6.350e-14 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 19 TVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
++HELAL+GD ++V++ Q KP + D+SGR+PLHWAVSKGH E+ W LD K+A+
Sbjct: 17 SIHELALEGDFQAVKQKIQLKPELVTKTDESGRIPLHWAVSKGHKEMVGWLLDLNKDAN 75
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A7R8X2X0_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X2X0_9CRUS) HSP 1 Score: 62.0 bits (149), Expect = 3.870e-8 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 7 VSKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEADTP 201
+S + LA +G I +V+E ++ P ++ KD +GRLP+HWA S GHTE+A++ L+ D P
Sbjct: 178 MSDTEIGRLAYEGQIAAVKENIKATPSLVKRKDSAGRLPIHWAASGGHTEIASFLLENGSPVDPP 242
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A1D2MJG5_ORCCI (26S proteasome non-ATPase regulatory subunit 10 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MJG5_ORCCI) HSP 1 Score: 60.1 bits (144), Expect = 9.590e-8 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 19 TVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFL 174
TVH+L L GD+ Q+L Q+ +++KD+SGR+P+HWA S G TEL L
Sbjct: 20 TVHQLILSGDVVGAQQLLQNNQNLVKSKDESGRIPIHWACSMGFTELTELLL 71
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A2V1CBP1_9HELO (Ankyrin n=1 Tax=Cadophora sp. DSE1049 TaxID=1485229 RepID=A0A2V1CBP1_9HELO) HSP 1 Score: 56.6 bits (135), Expect = 2.700e-7 Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
SK +HE A DG + V+ L + P Q DD GRLPLHWAVS H ++A L TK+ D
Sbjct: 7 SKFAIHEAARDGRTQVVESLLAANPKLAQRVDDDGRLPLHWAVSYNHLDIAK-LLASTKDFD 67
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A1E1JVL5_9HELO (Related to 26s proteasome subunit p28 n=5 Tax=Helotiales TaxID=5178 RepID=A0A1E1JVL5_9HELO) HSP 1 Score: 57.8 bits (138), Expect = 6.240e-7 Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
SK +HE A DG + V+ L + P Q DD GRLPLHWAVS H E+A L TK+ D
Sbjct: 7 SKFAIHEAARDGRTQIVESLLAANPKLAQRVDDDGRLPLHWAVSYNHLEIAK-LLANTKDFD 67
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A2J6Q9K8_9HELO (Ankyrin n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6Q9K8_9HELO) HSP 1 Score: 54.3 bits (129), Expect = 7.230e-6 Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query: 10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELA 162
SK +HE A DG V+ L + P + KDD RLP+HWAVS GH ++A
Sbjct: 5 SKFAIHEAARDGRTAVVESLLNANPKLAEKKDDDERLPIHWAVSYGHLDIA 55
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A2J6SXZ4_9HELO (Ankyrin n=2 Tax=Hyaloscypha hepaticicola/Rhizoscyphus ericae species complex TaxID=186449 RepID=A0A2J6SXZ4_9HELO) HSP 1 Score: 53.9 bits (128), Expect = 1.460e-5 Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query: 10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELA 162
SK +HE A DG V+ L + P + KDD RLP+HWAVS GH ++A
Sbjct: 5 SKFAIHEAARDGRTAVVESLLAANPKLAEKKDDDERLPIHWAVSYGHLDIA 55
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A1L7X7X7_9HELO (Related to 26s proteasome subunit p28 n=1 Tax=Phialocephala subalpina TaxID=576137 RepID=A0A1L7X7X7_9HELO) HSP 1 Score: 53.9 bits (128), Expect = 1.610e-5 Identity = 27/62 (43.55%), Postives = 35/62 (56.45%), Query Frame = 1
Query: 10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
SK +HE A DG V+ L + P + +DD RLP+HWAVS GH ++A L TK D
Sbjct: 7 SKFAIHEAARDGRTSVVESLLAANPKLAERRDDDERLPIHWAVSYGHLDIAI-LLANTKNFD 67
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A183IB60_9BILA (ANK_REP_REGION domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IB60_9BILA) HSP 1 Score: 53.5 bits (127), Expect = 2.070e-5 Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query: 7 VSKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTK 186
+S + LA +G + V+EL + KD+SGR+PLHWA S GH+E+ + D +K
Sbjct: 10 MSNSEICSLAYEGKGKEVKELIKKDSSLASAKDESGRIPLHWACSAGHSEIVQFLFDYSK 69
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A6P7S740_OCTVU (26S proteasome non-ATPase regulatory subunit 10 n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7S740_OCTVU) HSP 1 Score: 53.1 bits (126), Expect = 2.500e-5 Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 28 ELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLD 177
+ ++G+ ++++ + G + D+SGRLPLHWAVS+GH+E+A + LD
Sbjct: 8 DYVMNGNFTELKKILEENKGLLLKVDESGRLPLHWAVSQGHSEIADYLLD 57 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig98480.31664.1 >prot_Ecto-sp8_S_contig98480.31664.1 ID=prot_Ecto-sp8_S_contig98480.31664.1|Name=mRNA_Ecto-sp8_S_contig98480.31664.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp MLVSKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHback to top mRNA from alignment at Ecto-sp8_S_contig98480:44..562+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig98480.31664.1 ID=mRNA_Ecto-sp8_S_contig98480.31664.1|Name=mRNA_Ecto-sp8_S_contig98480.31664.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98480:44..562+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98480:44..562+ >mRNA_Ecto-sp8_S_contig98480.31664.1 ID=mRNA_Ecto-sp8_S_contig98480.31664.1|Name=mRNA_Ecto-sp8_S_contig98480.31664.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98480:44..562+ (Ectocarpus species8 EcLAC_412)back to top |