mRNA_Ecto-sp8_S_contig977.31533.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig977.31533.1
Unique NamemRNA_Ecto-sp8_S_contig977.31533.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig977.31533.1 vs. uniprot
Match: D8LN97_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN97_ECTSI)

HSP 1 Score: 519 bits (1336), Expect = 3.050e-176
Identity = 347/391 (88.75%), Postives = 350/391 (89.51%), Query Frame = 2 
Query:   65 MVACRHQGCAERASFGVGGGRVRAAEFCSGHAENGMVDFCKKTGGHPGCCMEHPSCGMEGSTNCSGHGNPGMMVNLDVKRCGHPGCTKWPSYGVEGCKMAGLCPQLTKDRMAYVVEGREHSPRQHADNNETLPFGVGGSKTAEFCSHAQEANTANVGLLGRKRPACGLKGTPTIKLGASNSKAGTADVVASKRRKLCNHPGCNTKPLFGEEGTDETKFCGHHSKPGMVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKRKRFKLTTASLAAKQTNKKRLHSEKKKEGKGTVEKARVDEDDDALLGRSGGERQSRATKRRAKEXXXXXXXXXXXXXXXEFVR 1237
            MVACRHQGCAERAS GV GGRVRAAEFCSGHAENGMVDFCKKTGG PGCCMEHPSCGMEGS NCS HGNPGMMVNLDVKRCGHPGCTKWPSYGVEGCKMAGLCPQLTKDRM YVVEGR  SPRQHAD+NETLPFGVGG KTAEFCSHAQ ANTANVG LGRKRPAC ++G PTIKLGASNSKAG ADVVASKRRKLCNHPGCNTKPLFGEEGTDETKFC HHSKPGMVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKRKRFKLTTASLAAKQ NKKRLH EK KEGK T E ARVDEDD  L GRSG ERQSRA KRRAKE               EFVR
Sbjct:    1 MVACRHQGCAERASSGVEGGRVRAAEFCSGHAENGMVDFCKKTGGRPGCCMEHPSCGMEGSKNCSRHGNPGMMVNLDVKRCGHPGCTKWPSYGVEGCKMAGLCPQLTKDRMTYVVEGRGQSPRQHADDNETLPFGVGGGKTAEFCSHAQAANTANVGQLGRKRPACVVEGAPTIKLGASNSKAGMADVVASKRRKLCNHPGCNTKPLFGEEGTDETKFCAHHSKPGMVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKRKRFKLTTASLAAKQANKKRLHYEKNKEGKKT-ENARVDEDD-TLPGRSG-ERQSRAIKRRAKEEGKETEDKARVDEDDEFVR 388
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BLAST of mRNA_Ecto-sp8_S_contig977.31533.1 vs. uniprot
Match: A0A6H5K5F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F0_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 2.740e-89
Identity = 254/371 (68.46%), Postives = 259/371 (69.81%), Query Frame = 2 
Query:   65 MVACRHQGCAERASFGVGGGRVRAAEFCSGHAENGMVDFCKKTGGHPGCCMEHPSCGMEGSTNCSGHGNPGMMVNLDVKRCGHPGCTKWPSYGVEGCKMAGLCPQLTKDRMAYVVEGREHSPRQHADNNETLPFGVGGSKTAEFCSHAQEANTANVGLLGRKRPACGLKGTPTIKLGASNSKAGTADVVASKRRKLCNHPGCNTKPLFGEEGTDETKFCGHHSKPGMVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKRKRFKLTTASLAAKQTNKKRLHSEKKKEGKGTVEKARVDEDDDALLGRSGGERQSRATKRRAK 1177
            MVACRHQGCAERASFGV GGRVRAAEFCSGHAENGMVDFCKKTGGHPGCCMEHPSCGMEG T CS HGNPGM+VN DVKRCGHP             KMAGLCPQL+KD M YVVEGR  SPRQHAD+NETLPF                                                      VASKR+KLCNHPGC                        MVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRKRFKLT ASLAAKQTNKKRLHSEKKKEGKGT E A V+EDD  LLGRS  ER SR  KRRAK
Sbjct:    1 MVACRHQGCAERASFGVEGGRVRAAEFCSGHAENGMVDFCKKTGGHPGCCMEHPSCGMEGCTYCSRHGNPGMLVNFDVKRCGHPVXXXXXXXXXXXXKMAGLCPQLSKDGMTYVVEGRGQSPRQHADDNETLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASKRKKLCNHPGCXXXXXXXXXXXXXXXXXXXXXXXXMVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKRFKLTVASLAAKQTNKKRLHSEKKKEGKGT-ESATVNEDD-TLLGRSS-ERHSRVMKRRAK 368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig977.31533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN97_ECTSI3.050e-17688.75EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K5F0_9PHAE2.740e-8968.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig977contigEcto-sp8_S_contig977:15170..17531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1351
Hectar predicted targeting categoryother localisation
Exons2
Cds size1287
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145343.2511196-UTR-Ecto-sp8_S_contig977:15169..152331681145343.2511196-UTR-Ecto-sp8_S_contig977:15169..15233Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig977 15170..15233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145343.2676961-CDS-Ecto-sp8_S_contig977:15233..162111681145343.2676961-CDS-Ecto-sp8_S_contig977:15233..16211Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig977 15234..16211 +
1681145343.28185-CDS-Ecto-sp8_S_contig977:17222..175311681145343.28185-CDS-Ecto-sp8_S_contig977:17222..17531Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig977 17223..17531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig977.31533.1prot_Ecto-sp8_S_contig977.31533.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig977 15234..17531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig977.31533.1

>prot_Ecto-sp8_S_contig977.31533.1 ID=prot_Ecto-sp8_S_contig977.31533.1|Name=mRNA_Ecto-sp8_S_contig977.31533.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=429bp
MVACRHQGCAERASFGVGGGRVRAAEFCSGHAENGMVDFCKKTGGHPGCC
MEHPSCGMEGSTNCSGHGNPGMMVNLDVKRCGHPGCTKWPSYGVEGCKMA
GLCPQLTKDRMAYVVEGREHSPRQHADNNETLPFGVGGSKTAEFCSHAQE
ANTANVGLLGRKRPACGLKGTPTIKLGASNSKAGTADVVASKRRKLCNHP
GCNTKPLFGEEGTDETKFCGHHSKPGMVNLTTKRCGHSGCDATPSYGVEG
SKVREFCPRHAKPGMVDVVARRCGNAGCMTMPSYGVDGSKMAEFCPRHAK
DGMVDVFKRKRFKLTTASLAAKQTNKKRLHSEKKKEGKGTVEKARVDEDD
DALLGRSGGERQSRATKRRAKEEGKEKEETARVDEDDEFVRRSGGERRSR
VVKRRAKRTPRRGSAAEREGRGAEARRTE
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mRNA from alignment at Ecto-sp8_S_contig977:15170..17531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig977.31533.1 ID=mRNA_Ecto-sp8_S_contig977.31533.1|Name=mRNA_Ecto-sp8_S_contig977.31533.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2362bp|location=Sequence derived from alignment at Ecto-sp8_S_contig977:15170..17531+ (Ectocarpus species8 EcLAC_412)
GTGCTTTTTCCGCTAGAGGGCTAACGCGGCGACTGCTGTACAAGTACTTC
CGCCGATAACAACCATGGTCGCATGTCGGCATCAAGGATGCGCCGAGCGT
GCGTCGTTCGGCGTTGGAGGGGGCCGTGTTAGGGCGGCAGAATTCTGCTC
TGGGCACGCGGAAAACGGGATGGTAGACTTCTGCAAGAAGACCGGCGGCC
ATCCAGGCTGCTGCATGGAACATCCGTCGTGCGGCATGGAGGGTTCCACG
AACTGCTCTGGTCACGGCAATCCGGGGATGATGGTGAACCTCGATGTGAA
GAGGTGCGGCCATCCGGGATGCACCAAGTGGCCGTCGTACGGCGTAGAGG
GTTGCAAGATGGCGGGTCTCTGCCCTCAGCTTACGAAGGACAGAATGGCC
TATGTAGTGGAGGGGAGAGAGCACAGCCCGCGGCAGCACGCAGACAACAA
CGAAACCCTGCCTTTCGGCGTGGGCGGTAGCAAGACGGCGGAGTTCTGCT
CACATGCGCAGGAGGCGAATACGGCTAACGTCGGTCTGCTAGGCCGCAAG
CGTCCAGCTTGTGGGTTGAAAGGCACGCCGACCATCAAGCTCGGTGCATC
CAACTCGAAGGCTGGGACGGCGGACGTCGTAGCCAGCAAGAGGAGGAAGC
TGTGCAACCATCCCGGGTGCAACACGAAGCCTCTGTTCGGGGAAGAGGGG
ACCGACGAGACCAAGTTCTGCGGTCATCACTCGAAGCCGGGCATGGTGAA
CTTGACCACCAAGAGGTGCGGCCACAGCGGCTGCGACGCGACACCGTCGT
ACGGCGTGGAAGGCTCCAAGGTTAGGGAGTTCTGTCCGCGTCATGCGAAG
CCAGGCATGGTGGATGTCGTCGCCAGGAGGTGCGGCAACGCCGGTTGCAT
GACGATGCCGTCGTACGGGGTCGACGGCAGCAAGATGGCGGAGTTCTGCC
CGCGGCACGCGAAGGACGGAATGGTAGATGTCTTCAAGAGGAAAAGGTTC
AAGCTCACTACGGCGAGCTTGGCAGCCAAGCAAACGAACAAGGTATTAAC
CCTCAGCCGTGTGACCGCTCTCCCTCATACTTGCTGCTGCTGTTCTTGTG
TTCATTTACAAGTTGGTTGTCATCTACATAGGACCTTACGTACCGGTCAA
GAAAAAAATCATATCCCGCTTTGCGTGCATGTAGTTGTTGACTGCTGTAC
AGCAGTCGTGAAGAAGGCAACAGCGGTCAAACTGCCCGAGGTATGCAAAA
AGTGTGTGTTTTTTCAGGACCCAGAGATGCCGTGGAATGTAGAAGCCGGC
GGGATACGCACACTGCTGTGCGGGCCTCCAGGCTCTGTACGTACATCACT
TTGGTCGCACAGCGCACTGCTTTAAACTCACTCGTAGATGTACACGCCGG
TAAGTTGGAGCGTGTTGGTGCGTAGCGGTTCTCGCCCGGCTACATAAACT
TTCGTCGATTCATTAGTCAGCTGGTCTGAGGGTTCCCCTGCACTGCTGTA
GCATCACCACGGCCTTTGGGCAGAAGCGCGGTGTAAAGCTTGTGGGTCGA
ACGAAGGTGTCACCTAACGGGCACCGACATTGACGATGTGGTATAGTAGG
TATCAACGGGTGCCCTGCCGACCACATAGAGTTCGTCGTGTTTCTAGAGT
TGTGCAACGTTCAACAGCTTGGCGCAGCTTGAGAAGCCAGGTTGCAATCT
GTGTTTCCGTCCGTTAGTGGCGTGAACGCCCCAGCCCCGTACCCGACGCG
GCGCGCGTGTCGACGTGCAGAACAGCGTCACCGACCCCATGGTAGTTAGT
TGTCGTTCTTTTGAGTGACGGACACTCACTCACCAAATCTGGAGACCTCC
TTTGAAAGAACCCCACGTGCGCCACCCCTGACTAACACCCTGCTGTGGAC
CATCGTGTATTTTCACTTGGCGATTGAGGACACGGACTAAAGCGTGTCTG
ACAGCAACACCTGGGGCCTCAAATTTCGCTGGTTCTACATATTCAGCCGC
TTCTCTCACACGCCTTGTTTTGGCCCCACCGCTCCGCATCGTTCGCTTTC
TAGAAGCGTTTGCATTCCGAGAAGAAGAAGGAGGGCAAGGGGACGGTGGA
GAAGGCTAGGGTGGACGAGGATGACGATGCACTTCTCGGTCGTTCCGGCG
GCGAGCGGCAAAGCAGGGCGACAAAGAGAAGAGCGAAGGAGGAAGGCAAG
GAGAAGGAGGAGACGGCTAGGGTGGATGAGGATGACGAATTTGTTCGACG
TTCCGGCGGCGAGCGGCGCAGCAGGGTGGTGAAGAGGAGAGCGAAGAGGA
CCCCGCGGCGCGGCAGCGCTGCTGAGCGGGAGGGCAGGGGTGCGGAGGCT
CGCCGAACCGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig977:15170..17531+

>mRNA_Ecto-sp8_S_contig977.31533.1 ID=mRNA_Ecto-sp8_S_contig977.31533.1|Name=mRNA_Ecto-sp8_S_contig977.31533.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1287bp|location=Sequence derived from alignment at Ecto-sp8_S_contig977:15170..17531+ (Ectocarpus species8 EcLAC_412)
ATGGTCGCATGTCGGCATCAAGGATGCGCCGAGCGTGCGTCGTTCGGCGT
TGGAGGGGGCCGTGTTAGGGCGGCAGAATTCTGCTCTGGGCACGCGGAAA
ACGGGATGGTAGACTTCTGCAAGAAGACCGGCGGCCATCCAGGCTGCTGC
ATGGAACATCCGTCGTGCGGCATGGAGGGTTCCACGAACTGCTCTGGTCA
CGGCAATCCGGGGATGATGGTGAACCTCGATGTGAAGAGGTGCGGCCATC
CGGGATGCACCAAGTGGCCGTCGTACGGCGTAGAGGGTTGCAAGATGGCG
GGTCTCTGCCCTCAGCTTACGAAGGACAGAATGGCCTATGTAGTGGAGGG
GAGAGAGCACAGCCCGCGGCAGCACGCAGACAACAACGAAACCCTGCCTT
TCGGCGTGGGCGGTAGCAAGACGGCGGAGTTCTGCTCACATGCGCAGGAG
GCGAATACGGCTAACGTCGGTCTGCTAGGCCGCAAGCGTCCAGCTTGTGG
GTTGAAAGGCACGCCGACCATCAAGCTCGGTGCATCCAACTCGAAGGCTG
GGACGGCGGACGTCGTAGCCAGCAAGAGGAGGAAGCTGTGCAACCATCCC
GGGTGCAACACGAAGCCTCTGTTCGGGGAAGAGGGGACCGACGAGACCAA
GTTCTGCGGTCATCACTCGAAGCCGGGCATGGTGAACTTGACCACCAAGA
GGTGCGGCCACAGCGGCTGCGACGCGACACCGTCGTACGGCGTGGAAGGC
TCCAAGGTTAGGGAGTTCTGTCCGCGTCATGCGAAGCCAGGCATGGTGGA
TGTCGTCGCCAGGAGGTGCGGCAACGCCGGTTGCATGACGATGCCGTCGT
ACGGGGTCGACGGCAGCAAGATGGCGGAGTTCTGCCCGCGGCACGCGAAG
GACGGAATGGTAGATGTCTTCAAGAGGAAAAGGTTCAAGCTCACTACGGC
GAGCTTGGCAGCCAAGCAAACGAACAAGAAGCGTTTGCATTCCGAGAAGA
AGAAGGAGGGCAAGGGGACGGTGGAGAAGGCTAGGGTGGACGAGGATGAC
GATGCACTTCTCGGTCGTTCCGGCGGCGAGCGGCAAAGCAGGGCGACAAA
GAGAAGAGCGAAGGAGGAAGGCAAGGAGAAGGAGGAGACGGCTAGGGTGG
ATGAGGATGACGAATTTGTTCGACGTTCCGGCGGCGAGCGGCGCAGCAGG
GTGGTGAAGAGGAGAGCGAAGAGGACCCCGCGGCGCGGCAGCGCTGCTGA
GCGGGAGGGCAGGGGTGCGGAGGCTCGCCGAACCGAG
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