mRNA_Ecto-sp8_S_contig96685.31370.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96685.31370.1
Unique NamemRNA_Ecto-sp8_S_contig96685.31370.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: A0A0U2KDZ8_CALSV (60S ribosomal protein L10 n=1 Tax=Calanus sinicus TaxID=114070 RepID=A0A0U2KDZ8_CALSV)

HSP 1 Score: 216 bits (549), Expect = 1.640e-69
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRR AKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKY+VK CGKDQFHIRIRVHPFMVLRINKMLSC
Sbjct:    1 MGRRSAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYLVKNCGKDQFHIRIRVHPFMVLRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: A0A0U2V893_ACAPC (60S ribosomal protein L10 n=6 Tax=Calanoida TaxID=6833 RepID=A0A0U2V893_ACAPC)

HSP 1 Score: 213 bits (541), Expect = 2.710e-68
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRK+AGVDEFPLSVHLVSDELEQLSSEA+EAARICCNKY+VK CGKDQFHIR+RVHPF VLRINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKKAGVDEFPLSVHLVSDELEQLSSEAMEAARICCNKYLVKNCGKDQFHIRVRVHPFHVLRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: A0A0U2UPK3_9MAXI (60S ribosomal protein L10 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2UPK3_9MAXI)

HSP 1 Score: 204 bits (519), Expect = 5.990e-65
Identity = 95/105 (90.48%), Postives = 100/105 (95.24%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRA VD+FPLSVHLVSDELEQLSSEA+EAARICCNKY+VK  GKD FHIR+RVHPF VLRINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAPVDDFPLSVHLVSDELEQLSSEAMEAARICCNKYLVKTAGKDSFHIRVRVHPFHVLRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: A0A3M7QEC0_BRAPC (60S ribosomal L10 (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QEC0_BRAPC)

HSP 1 Score: 199 bits (505), Expect = 1.480e-63
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSR  RGVPDPKIRIFDLGRKRA V+EFPL VHLVSDELEQLSSEALEA RICCNKY+VKYCGKD FHIR+R+HPF VLRINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRHCRGVPDPKIRIFDLGRKRARVEEFPLCVHLVSDELEQLSSEALEAGRICCNKYLVKYCGKDFFHIRMRLHPFHVLRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: A0A336M8R2_CULSO (CSON013611 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336M8R2_CULSO)

HSP 1 Score: 199 bits (507), Expect = 3.990e-63
Identity = 91/105 (86.67%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRF RGVPD KIRIFDLGRK+AGVD+FPL VHLVSDE EQLSSEALEA RICCNKY+VK+CGKDQFHIR+R+HPF V+RINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAGVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKFCGKDQFHIRMRLHPFHVIRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: A0A5S6QGJ5_TRIMR (Ribosomal_L16 domain-containing protein n=3 Tax=Trichuris TaxID=36086 RepID=A0A5S6QGJ5_TRIMR)

HSP 1 Score: 198 bits (503), Expect = 1.430e-62
Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRK+A VDEFPL VHLVSDE EQ+SSEALEAARIC NKY+ K CGKD FH+RIRVHPF V+RINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKKATVDEFPLCVHLVSDEFEQISSEALEAARICANKYLTKSCGKDTFHVRIRVHPFHVIRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: A0A8E6YJR5_9EUKA (60S ribosomal protein L10 n=1 Tax=Salpingoeca prava TaxID=2320254 RepID=A0A8E6YJR5_9EUKA)

HSP 1 Score: 197 bits (501), Expect = 3.060e-62
Identity = 90/105 (85.71%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRFNRGVPDPKIRI+DLGRKRA VD+FPL+VHL+SDE EQ+SSEALEAARICCNKY+VK  GKD FHIR+RVHPF V RINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFNRGVPDPKIRIYDLGRKRASVDDFPLAVHLISDEYEQISSEALEAARICCNKYLVKNVGKDGFHIRVRVHPFHVTRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: B2YI31_9BILA (Putative 60S ribosomal protein RPL10 (Fragment) n=1 Tax=Phoronis muelleri TaxID=478209 RepID=B2YI31_9BILA)

HSP 1 Score: 197 bits (500), Expect = 3.380e-62
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRF RGVPD KIRI+DLGRK+A VDEFPL +HLVSDELEQLSSEALEA RIC NKYMVK+CGKD FHIRIRVHPF VLRINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIYDLGRKKARVDEFPLCIHLVSDELEQLSSEALEAGRICANKYMVKFCGKDSFHIRIRVHPFHVLRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: G1XH44_ARTOA (Ribosomal_L16 domain-containing protein n=6 Tax=Orbiliaceae TaxID=47021 RepID=G1XH44_ARTOA)

HSP 1 Score: 195 bits (496), Expect = 1.870e-61
Identity = 90/105 (85.71%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPL +HLVS+E EQLSSEALEAARIC NKY+VK  GKD FH+R+R HPF V+RINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQLSSEALEAARICANKYLVKIAGKDGFHMRVRCHPFHVIRINKMLSC 105
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BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Match: UPI00083C7D27 (60S ribosomal protein L10 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C7D27)

HSP 1 Score: 195 bits (496), Expect = 1.870e-61
Identity = 90/105 (85.71%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    4 MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSVHLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRINKMLSC 318
            MGRRPA+CYRYCKNKPYPKSRF RGVPD KIRIFDLGRK+A VD+FPL VHLVSDE EQLSSEALEA RICCNKY+VK CGKDQFHIR+R+HPF V+RINKMLSC
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAAVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96685.31370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2KDZ8_CALSV1.640e-6997.1460S ribosomal protein L10 n=1 Tax=Calanus sinicus ... [more]
A0A0U2V893_ACAPC2.710e-6893.3360S ribosomal protein L10 n=6 Tax=Calanoida TaxID=... [more]
A0A0U2UPK3_9MAXI5.990e-6590.4860S ribosomal protein L10 n=1 Tax=Pseudodiaptomus ... [more]
A0A3M7QEC0_BRAPC1.480e-6388.5760S ribosomal L10 (Fragment) n=1 Tax=Brachionus pl... [more]
A0A336M8R2_CULSO3.990e-6386.67CSON013611 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A5S6QGJ5_TRIMR1.430e-6286.67Ribosomal_L16 domain-containing protein n=3 Tax=Tr... [more]
A0A8E6YJR5_9EUKA3.060e-6285.7160S ribosomal protein L10 n=1 Tax=Salpingoeca prav... [more]
B2YI31_9BILA3.380e-6287.62Putative 60S ribosomal protein RPL10 (Fragment) n=... [more]
G1XH44_ARTOA1.870e-6185.71Ribosomal_L16 domain-containing protein n=6 Tax=Or... [more]
UPI00083C7D271.870e-6185.7160S ribosomal protein L10 n=1 Tax=Nicrophorus vesp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96685contigEcto-sp8_S_contig96685:35..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start1
Seed ortholog score196.4
Seed ortholog evalue6.5e-48
Seed eggNOG ortholog13349.G1XH44
Preferred nameRPL10
Model size318
KEGG koko:K02866
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032984,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.60s ribosomal protein
EggNOG OGs38CBG@33154,3NXSP@4751,3QP1U@4890,COG0197@1,KOG0857@2759
Cds size315
COG Functional cat.J
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145331.565431-UTR-Ecto-sp8_S_contig96685:34..371681145331.565431-UTR-Ecto-sp8_S_contig96685:34..37Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig96685 35..37 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145331.5791306-CDS-Ecto-sp8_S_contig96685:37..3521681145331.5791306-CDS-Ecto-sp8_S_contig96685:37..352Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96685 38..352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96685.31370.1prot_Ecto-sp8_S_contig96685.31370.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96685 38..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96685.31370.1

>prot_Ecto-sp8_S_contig96685.31370.1 ID=prot_Ecto-sp8_S_contig96685.31370.1|Name=mRNA_Ecto-sp8_S_contig96685.31370.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
MGRRPAKCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKRAGVDEFPLSV
HLVSDELEQLSSEALEAARICCNKYMVKYCGKDQFHIRIRVHPFMVLRIN
KMLSC
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mRNA from alignment at Ecto-sp8_S_contig96685:35..352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96685.31370.1 ID=mRNA_Ecto-sp8_S_contig96685.31370.1|Name=mRNA_Ecto-sp8_S_contig96685.31370.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96685:35..352+ (Ectocarpus species8 EcLAC_412)
ACCATGGGAAGGCGACCAGCAAAGTGCTATCGCTACTGCAAGAACAAGCC
TTACCCTAAGAGCAGGTTCAACCGTGGAGTCCCAGACCCTAAAATCAGGA
TCTTTGATCTTGGCCGCAAGAGGGCTGGTGTTGACGAGTTTCCTCTGTCC
GTTCACTTGGTGTCCGATGAGTTGGAGCAGCTGTCCAGCGAGGCCCTGGA
GGCCGCCCGTATCTGCTGCAACAAGTACATGGTGAAGTACTGCGGCAAGG
ACCAGTTCCACATCAGGATCCGCGTCCACCCCTTCATGGTGCTGAGGATC
AACAAAATGTTGTCGTGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96685:35..352+

>mRNA_Ecto-sp8_S_contig96685.31370.1 ID=mRNA_Ecto-sp8_S_contig96685.31370.1|Name=mRNA_Ecto-sp8_S_contig96685.31370.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96685:35..352+ (Ectocarpus species8 EcLAC_412)
ATGGGAAGGCGACCAGCAAAGTGCTATCGCTACTGCAAGAACAAGCCTTA
CCCTAAGAGCAGGTTCAACCGTGGAGTCCCAGACCCTAAAATCAGGATCT
TTGATCTTGGCCGCAAGAGGGCTGGTGTTGACGAGTTTCCTCTGTCCGTT
CACTTGGTGTCCGATGAGTTGGAGCAGCTGTCCAGCGAGGCCCTGGAGGC
CGCCCGTATCTGCTGCAACAAGTACATGGTGAAGTACTGCGGCAAGGACC
AGTTCCACATCAGGATCCGCGTCCACCCCTTCATGGTGCTGAGGATCAAC
AAAATGTTGTCGTGC
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