mRNA_Ecto-sp8_S_contig96370.31320.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96370.31320.1
Unique NamemRNA_Ecto-sp8_S_contig96370.31320.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: D7G844_ECTSI (Prenylcys_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G844_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.810e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 AGSLVEVELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE 159
            AGSLVEVELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE
Sbjct:  202 AGSLVEVELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE 254
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: A0A7S0DX81_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DX81_9CRYP)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   22 ELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE 159
            EL  A NRVNYNQ N LNALAG+VSLCP V G +F+++ GNA L E
Sbjct:  236 ELVGAVNRVNYNQNNSLNALAGMVSLCPLVAGSVFAIQEGNAALPE 281
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: A0A7S4UR32_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UR32_GUITH)

HSP 1 Score: 62.8 bits (151), Expect = 3.550e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   22 ELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE 159
            EL  A NRVNYNQ N LNALAG+VSLCP V G +F++  GNA L E
Sbjct:   73 ELVGAVNRVNYNQDNSLNALAGMVSLCPLVAGSVFAIREGNAALPE 118
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: L1JEP7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JEP7_GUITC)

HSP 1 Score: 62.8 bits (151), Expect = 3.790e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   22 ELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE 159
            EL  A NRVNYNQ N LNALAG+VSLCP V G +F++  GNA L E
Sbjct:  184 ELVGAVNRVNYNQDNSLNALAGMVSLCPLVAGSVFAIREGNAALPE 229
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: A0A836C9V6_9STRA (Prenylcysteine lyase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.100e-10
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    7 SLVEVELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE 159
            +L+E EL +A NRVNYNQ N LNALAG++SL   V GDLF ++ GNA++++
Sbjct:  175 TLLERELVYAVNRVNYNQDNDLNALAGLISLVTLVGGDLFKIKEGNAKVAQ 225
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: I0YUS9_COCSC (Prenylcysteine lyase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YUS9_COCSC)

HSP 1 Score: 59.3 bits (142), Expect = 6.110e-9
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 AGSLVEVELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLSE 159
            A +L   E     NR+ YNQGNG+NALAG+VSL P + G LF ++GGN  L E
Sbjct:   75 AANLFAKEFVAGINRIQYNQGNGINALAGMVSLLPTIDGRLFRIKGGNRLLPE 127
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: A0A7S3K3V0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3V0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-7
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   22 ELAHAANRVNYNQGNGLNALAGVVSLCPAVTGD-LFSVEGGNARLSE 159
            EL  A NRVNYNQGN +NAL G VS+CPAV G  + ++  GN++L++
Sbjct:  204 ELTFAMNRVNYNQGNEINALTGSVSMCPAVAGQKVLAIRQGNSQLAQ 250
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: A0A7S4DK43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DK43_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 2.990e-7
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   22 ELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGG 141
            +L +A N+ NYNQG  +NALAG+VS+CP +TG LF V  G
Sbjct:   79 QLVYAMNKCNYNQGLEMNALAGMVSMCPMITGSLFQVREG 118
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BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Match: W7U5E1_9STRA (Prenylcysteine oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5E1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.510e-6
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    7 SLVEVELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNARLS 156
            S +  E   +  RVNYN  N LNALAG+VSL P VTG++ S+  GNA L+
Sbjct:  212 SKLVTEFVGSIQRVNYNANNDLNALAGLVSLIPMVTGEVVSLTEGNAALA 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96370.31320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G844_ECTSI1.810e-25100.00Prenylcys_lyase domain-containing protein n=2 Tax=... [more]
A0A7S0DX81_9CRYP1.490e-1065.22Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4UR32_GUITH3.550e-1065.22Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
L1JEP7_GUITC3.790e-1065.22Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A836C9V6_9STRA7.100e-1056.86Prenylcysteine lyase-domain-containing protein n=1... [more]
I0YUS9_COCSC6.110e-952.83Prenylcysteine lyase n=1 Tax=Coccomyxa subellipsoi... [more]
A0A7S3K3V0_9STRA2.710e-755.32Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4DK43_HETAK2.990e-757.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7U5E1_9STRA8.510e-652.00Prenylcysteine oxidase n=2 Tax=Monodopsidaceae Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96370contigEcto-sp8_S_contig96370:55..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score107.1
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D7G844
Preferred namePCYOX1L
Model size159
KEGG rclassRC00069,RC02012
KEGG koko:K05906
KEGG ReactionR09562
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000098,GO:0000323,GO:0001101,GO:0001735,GO:0002576,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005774,GO:0005886,GO:0006082,GO:0006508,GO:0006520,GO:0006575,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006887,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008509,GO:0008555,GO:0009056,GO:0009057,GO:0009063,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009987,GO:0010033,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015318,GO:0015399,GO:0015405,GO:0015698,GO:0016020,GO:0016054,GO:0016192,GO:0016462,GO:0016491,GO:0016667,GO:0016670,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019637,GO:0019752,GO:0019941,GO:0022804,GO:0022857,GO:0023052,GO:0030141,GO:0030163,GO:0030327,GO:0030328,GO:0030329,GO:0031090,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032870,GO:0032940,GO:0032991,GO:0032994,GO:0033993,GO:0034220,GO:0034358,GO:0034361,GO:0034385,GO:0034774,GO:0042219,GO:0042221,GO:0042623,GO:0042626,GO:0043170,GO:0043225,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044273,GO:0044281,GO:0044282,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045338,GO:0046395,GO:0046903,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051716,GO:0055085,GO:0055114,GO:0060205,GO:0065007,GO:0070013,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071944,GO:0097305,GO:0097306,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0099133,GO:0099503,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1902476,GO:1990777
Exons2
EggNOG free text desc.prenylcysteine oxidase activity
EggNOG OGs2CMX8@1,2QSHJ@2759
EC1.8.3.5,1.8.3.6
Cds size159
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.6896057-CDS-Ecto-sp8_S_contig96370:54..1141681145327.6896057-CDS-Ecto-sp8_S_contig96370:54..114Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96370 55..114 +
1681145327.7082615-CDS-Ecto-sp8_S_contig96370:432..5311681145327.7082615-CDS-Ecto-sp8_S_contig96370:432..531Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96370 433..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96370.31320.1prot_Ecto-sp8_S_contig96370.31320.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96370 55..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96370.31320.1

>prot_Ecto-sp8_S_contig96370.31320.1 ID=prot_Ecto-sp8_S_contig96370.31320.1|Name=mRNA_Ecto-sp8_S_contig96370.31320.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=53bp
AGSLVEVELAHAANRVNYNQGNGLNALAGVVSLCPAVTGDLFSVEGGNAR
LSE
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mRNA from alignment at Ecto-sp8_S_contig96370:55..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96370.31320.1 ID=mRNA_Ecto-sp8_S_contig96370.31320.1|Name=mRNA_Ecto-sp8_S_contig96370.31320.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96370:55..531+ (Ectocarpus species8 EcLAC_412)
GCAGGGTCGTTGGTGGAGGTTGAGCTAGCGCACGCCGCCAACAGGGTAAA
CTACAACCAGGTCGGTGCGTCTTATTGAAGGGTGCTCGAACCGGCGGTGC
TTGAAAAAGGGCGGTTAGAGGTATTAAGTCTACGGCTACTTTAGCCGGAG
ATAGTTTCAAGCCGAGATTGGAGCGACTCTCGCCGTTTGATGTTATAGCT
GAAATGAAGGTATTCGGGACCATCCTTTGGAGAAAAGCCAGTCGTCACAC
TTGGAAACCCCATCTCAGTTGAAAATACATACTTCCTTAACAGCAATGGC
AGCAGAACTGTGCCTTCCCATAGCTACGTCAGAGGCGAGCAAGTCCGTGC
TTTAACTGTTGCCTTTTCCCCTCATCAGGGCAACGGTCTCAACGCGCTCG
CGGGTGTCGTCAGTCTCTGCCCGGCCGTTACCGGAGACCTGTTCAGCGTG
GAAGGGGGAAACGCCCGCCTTTCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96370:55..531+

>mRNA_Ecto-sp8_S_contig96370.31320.1 ID=mRNA_Ecto-sp8_S_contig96370.31320.1|Name=mRNA_Ecto-sp8_S_contig96370.31320.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96370:55..531+ (Ectocarpus species8 EcLAC_412)
GCAGGGTCGTTGGTGGAGGTTGAGCTAGCGCACGCCGCCAACAGGGTAAA
CTACAACCAGGGCAACGGTCTCAACGCGCTCGCGGGTGTCGTCAGTCTCT
GCCCGGCCGTTACCGGAGACCTGTTCAGCGTGGAAGGGGGAAACGCCCGC
CTTTCAGAG
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