mRNA_Ecto-sp8_S_contig95789.31219.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95789.31219.1
Unique NamemRNA_Ecto-sp8_S_contig95789.31219.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig95789.31219.1 vs. uniprot
Match: D7FNB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNB0_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.810e-16
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   58 PPTGMSALHLSAYEGDANLVRGRIELGEDPNARDEVG 168
            PPTGMSALHLSAYEGDANLVRGRIELGEDPNARDE G
Sbjct:    9 PPTGMSALHLSAYEGDANLVRGRIELGEDPNARDEDG 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95789.31219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNB0_ECTSI4.810e-1697.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95789contigEcto-sp8_S_contig95789:53..223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score77.8
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D7FNB0
Model size171
KEGG koko:K06694,ko:K15504
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
Cds size171
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03051,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145319.9108422-CDS-Ecto-sp8_S_contig95789:52..2231681145319.9108422-CDS-Ecto-sp8_S_contig95789:52..223Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95789 53..223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95789.31219.1prot_Ecto-sp8_S_contig95789.31219.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95789 53..223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95789.31219.1

>prot_Ecto-sp8_S_contig95789.31219.1 ID=prot_Ecto-sp8_S_contig95789.31219.1|Name=mRNA_Ecto-sp8_S_contig95789.31219.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=57bp
SPGRASRCLCTWWMLQALHPPTGMSALHLSAYEGDANLVRGRIELGEDPN
ARDEVG*
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mRNA from alignment at Ecto-sp8_S_contig95789:53..223-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95789.31219.1 ID=mRNA_Ecto-sp8_S_contig95789.31219.1|Name=mRNA_Ecto-sp8_S_contig95789.31219.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95789:53..223- (Ectocarpus species8 EcLAC_412)
TCCCCTGGTAGAGCCAGTCGATGTCTTTGCACATGGTGGATGCTGCAGGC
ACTACACCCACCCACAGGCATGTCGGCGCTTCATCTGTCAGCGTACGAGG
GAGATGCGAACCTTGTGCGAGGGAGGATTGAGCTGGGAGAAGATCCTAAC
GCGAGAGACGAGGTGGGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95789:53..223-

>mRNA_Ecto-sp8_S_contig95789.31219.1 ID=mRNA_Ecto-sp8_S_contig95789.31219.1|Name=mRNA_Ecto-sp8_S_contig95789.31219.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95789:53..223- (Ectocarpus species8 EcLAC_412)
TCCCCTGGTAGAGCCAGTCGATGTCTTTGCACATGGTGGATGCTGCAGGC
ACTACACCCACCCACAGGCATGTCGGCGCTTCATCTGTCAGCGTACGAGG
GAGATGCGAACCTTGTGCGAGGGAGGATTGAGCTGGGAGAAGATCCTAAC
GCGAGAGACGAGGTGGGTTAA
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