mRNA_Ecto-sp8_S_contig9577.31213.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9577.31213.1
Unique NamemRNA_Ecto-sp8_S_contig9577.31213.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9577.31213.1 vs. uniprot
Match: D8LM82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM82_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 7.600e-24
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:  163 EPPPSKGRQKKHAPSKVPVSPGVAFVPYRSPTSRANPRGSSLRGSGAIAGRKTRF 327
            E PP KGRQKKHAPSKVPVSPGVAFVPYRSPTSR NPRGSSLRGSGAIAGRKTRF
Sbjct:  315 EAPPCKGRQKKHAPSKVPVSPGVAFVPYRSPTSRTNPRGSSLRGSGAIAGRKTRF 369
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BLAST of mRNA_Ecto-sp8_S_contig9577.31213.1 vs. uniprot
Match: D7FK84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK84_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.140e-23
Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:    1 HTFTGSENITVRPSSFSRWGQSESGTKEATXXXXXXXXXXXXXXXXXXXXPSRQEPPPSKGRQKKHAPSKVPVSPGVAFVPYRSPTSRANPRGSSLRGSGAIAGRKTRF 327
            H F+GSENITVR SS SRW  ++   KEA+                     S +E   S GRQ+KHAP+KV VSPGV FVPYRSPT RANPRG+SLRGSGAIAGRKT F
Sbjct:  326 HAFSGSENITVRQSSLSRW--TKIANKEASTLVSTSTSVTIRS--------SSREGVVSLGRQRKHAPAKVSVSPGVMFVPYRSPTRRANPRGTSLRGSGAIAGRKTSF 424
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9577.31213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM82_ECTSI7.600e-2494.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK84_ECTSI2.140e-2357.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9577contigEcto-sp8_S_contig9577:43..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size355
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145319.53684-CDS-Ecto-sp8_S_contig9577:42..3721681145319.53684-CDS-Ecto-sp8_S_contig9577:42..372Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9577 43..372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145319.550161-UTR-Ecto-sp8_S_contig9577:372..3951681145319.550161-UTR-Ecto-sp8_S_contig9577:372..395Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9577 373..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9577.31213.1prot_Ecto-sp8_S_contig9577.31213.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9577 43..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9577.31213.1

>prot_Ecto-sp8_S_contig9577.31213.1 ID=prot_Ecto-sp8_S_contig9577.31213.1|Name=mRNA_Ecto-sp8_S_contig9577.31213.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=110bp
HTFTGSENITVRPSSFSRWGQSESGTKEATTTTTTPVSTPPSASTPRSPS
PSRQEPPPSKGRQKKHAPSKVPVSPGVAFVPYRSPTSRANPRGSSLRGSG
AIAGRKTRF*
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mRNA from alignment at Ecto-sp8_S_contig9577:43..395+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9577.31213.1 ID=mRNA_Ecto-sp8_S_contig9577.31213.1|Name=mRNA_Ecto-sp8_S_contig9577.31213.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=353bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9577:43..395+ (Ectocarpus species8 EcLAC_412)
CACACCTTCACTGGGAGCGAGAACATCACGGTGAGACCGTCTTCGTTCTC
TAGGTGGGGCCAGAGCGAGAGCGGGACCAAGGAGGCAACAACGACGACGA
CGACACCGGTTTCGACACCGCCCTCTGCCTCGACCCCCCGCTCCCCGAGC
CCTTCTCGACAGGAGCCCCCCCCAAGCAAGGGCCGCCAGAAGAAGCACGC
CCCCTCCAAGGTCCCCGTCTCCCCGGGGGTGGCGTTCGTGCCCTACCGCA
GCCCGACCAGTCGGGCTAACCCGAGAGGCTCGAGCCTGCGAGGAAGCGGC
GCGATTGCCGGTCGCAAGACCCGGTTCTAGGCGAGGGTAGTATGCATAGC
CCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9577:43..395+

>mRNA_Ecto-sp8_S_contig9577.31213.1 ID=mRNA_Ecto-sp8_S_contig9577.31213.1|Name=mRNA_Ecto-sp8_S_contig9577.31213.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9577:43..395+ (Ectocarpus species8 EcLAC_412)
CACACCTTCACTGGGAGCGAGAACATCACGGTGAGACCGTCTTCGTTCTC
TAGGTGGGGCCAGAGCGAGAGCGGGACCAAGGAGGCAACAACGACGACGA
CGACACCGGTTTCGACACCGCCCTCTGCCTCGACCCCCCGCTCCCCGAGC
CCTTCTCGACAGGAGCCCCCCCCAAGCAAGGGCCGCCAGAAGAAGCACGC
CCCCTCCAAGGTCCCCGTCTCCCCGGGGGTGGCGTTCGTGCCCTACCGCA
GCCCGACCAGTCGGGCTAACCCGAGAGGCTCGAGCCTGCGAGGAAGCGGC
GCGATTGCCGGTCGCAAGACCCGGTTCTAG
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