mRNA_Ecto-sp8_S_contig95133.31096.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95133.31096.1
Unique NamemRNA_Ecto-sp8_S_contig95133.31096.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A6H5JCX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.270e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ
Sbjct:  492 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 531
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: D8LJ67_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ67_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.720e-16
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            MISSRVRKGEYHTLAAF SDVMLLFDNAREYNVEGSLVYQ
Sbjct:  456 MISSRVRKGEYHTLAAFASDVMLLFDNAREYNVEGSLVYQ 495
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A1I9G969_BRUMA (Bm11255 (Fragment) n=1 Tax=Brugia malayi TaxID=6279 RepID=A0A1I9G969_BRUMA)

HSP 1 Score: 48.1 bits (113), Expect = 4.570e-5
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            MI+ ++++ EYHTL     D++L+F+NA+ YNVEGS +Y+
Sbjct:   89 MINKKLKRDEYHTLEELLKDIVLVFENAKTYNVEGSDIYE 128
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A0S7L8K1_9TELE (SMCA4 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7L8K1_9TELE)

HSP 1 Score: 46.2 bits (108), Expect = 4.690e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    4 ISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            I  R+R   Y +L   E DVMLLF NA+ +N+EGSL+Y+
Sbjct:   36 IKERIRSHRYRSLGDLERDVMLLFQNAQTFNLEGSLIYE 74
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A183DTX7_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DTX7_9BILA)

HSP 1 Score: 48.1 bits (113), Expect = 4.710e-5
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            +I+ ++++ EYHTL    SD++L+F NA+ YNVEGS +Y+
Sbjct:  406 VINKKLKRSEYHTLDQLLSDILLVFKNAKSYNVEGSEIYE 445
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A158PQ66_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A158PQ66_BRUPA)

HSP 1 Score: 48.1 bits (113), Expect = 4.720e-5
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            MI+ ++++ EYHTL     D++L+F+NA+ YNVEGS +Y+
Sbjct:  415 MINKKLKRDEYHTLEELLKDIVLVFENAKTYNVEGSDIYE 454
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: Q8IHI6_BRUMA (Polybromodomain protein n=2 Tax=Brugia TaxID=6278 RepID=Q8IHI6_BRUMA)

HSP 1 Score: 48.1 bits (113), Expect = 4.720e-5
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            MI+ ++++ EYHTL     D++L+F+NA+ YNVEGS +Y+
Sbjct:  372 MINKKLKRDEYHTLEELLKDIVLVFENAKTYNVEGSDIYE 411
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BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A1P6BU68_BRUMA (Bm2393, isoform c n=17 Tax=Onchocercidae TaxID=6296 RepID=A0A1P6BU68_BRUMA)

HSP 1 Score: 48.1 bits (113), Expect = 4.720e-5
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            MI+ ++++ EYHTL     D++L+F+NA+ YNVEGS +Y+
Sbjct:  389 MINKKLKRDEYHTLEELLKDIVLVFENAKTYNVEGSDIYE 428
[Close]
BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A367JBU7_RHIST (Uncharacterized protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367JBU7_RHIST)

HSP 1 Score: 47.8 bits (112), Expect = 6.430e-5
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            MI  R+    Y T+A FESD  L+F+NAR +N EGS+VY+
Sbjct:  569 MIKERIHSSYYETVAEFESDFHLMFENARTFNEEGSVVYE 608
[Close]
BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Match: A0A8C7ZSH9_9TELE (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7ZSH9_9TELE)

HSP 1 Score: 47.8 bits (112), Expect = 6.460e-5
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    4 ISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQ 120
            I  R+R   Y TL   E DVMLLF NA+ +N+EGSL+Y+
Sbjct: 1342 IKERIRSHRYRTLGDLERDVMLLFQNAQTFNLEGSLIYE 1380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95133.31096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JCX1_9PHAE7.270e-17100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LJ67_ECTSI4.720e-1697.50Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A1I9G969_BRUMA4.570e-547.50Bm11255 (Fragment) n=1 Tax=Brugia malayi TaxID=627... [more]
A0A0S7L8K1_9TELE4.690e-551.28SMCA4 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A183DTX7_9BILA4.710e-547.50Uncharacterized protein n=1 Tax=Gongylonema pulchr... [more]
A0A158PQ66_BRUPA4.720e-547.50Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
Q8IHI6_BRUMA4.720e-547.50Polybromodomain protein n=2 Tax=Brugia TaxID=6278 ... [more]
A0A1P6BU68_BRUMA4.720e-547.50Bm2393, isoform c n=17 Tax=Onchocercidae TaxID=629... [more]
A0A367JBU7_RHIST6.430e-552.50Uncharacterized protein (Fragment) n=1 Tax=Rhizopu... [more]
A0A8C7ZSH9_9TELE6.460e-553.85SWI/SNF related, matrix associated, actin dependen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95133contigEcto-sp8_S_contig95133:384..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.7
Seed ortholog evalue4.1e-13
Seed eggNOG ortholog2880.D8LJ67
Model size147
KEGG koko:K11647,ko:K11756,ko:K11757,ko:K11786,ko:K15192
KEGG Pathwayko04714,ko05225,map04714,map05225
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010959,GO:0016043,GO:0016462,GO:0016514,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032991,GO:0034756,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070603,GO:0071103,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140097,GO:1900390,GO:1900393,GO:1900400,GO:1901265,GO:1901363,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.aortic smooth muscle cell differentiation
EggNOG OGsCOG0553@1,KOG0386@2759
Cds size147
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145310.9105306-CDS-Ecto-sp8_S_contig95133:383..5301681145310.9105306-CDS-Ecto-sp8_S_contig95133:383..530Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95133 384..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95133.31096.1prot_Ecto-sp8_S_contig95133.31096.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95133 384..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95133.31096.1

>prot_Ecto-sp8_S_contig95133.31096.1 ID=prot_Ecto-sp8_S_contig95133.31096.1|Name=mRNA_Ecto-sp8_S_contig95133.31096.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=49bp
MISSRVRKGEYHTLAAFESDVMLLFDNAREYNVEGSLVYQVSTSSSSS*
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mRNA from alignment at Ecto-sp8_S_contig95133:384..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95133.31096.1 ID=mRNA_Ecto-sp8_S_contig95133.31096.1|Name=mRNA_Ecto-sp8_S_contig95133.31096.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95133:384..530- (Ectocarpus species8 EcLAC_412)
ATGATATCTTCGAGGGTCCGGAAGGGGGAGTACCACACCCTAGCCGCCTT
CGAGTCTGACGTGATGCTTCTCTTCGACAACGCGCGCGAGTACAACGTCG
AGGGGTCTCTGGTGTACCAGGTGAGTACGTCATCTTCGTCGTCATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95133:384..530-

>mRNA_Ecto-sp8_S_contig95133.31096.1 ID=mRNA_Ecto-sp8_S_contig95133.31096.1|Name=mRNA_Ecto-sp8_S_contig95133.31096.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95133:384..530- (Ectocarpus species8 EcLAC_412)
ATGATATCTTCGAGGGTCCGGAAGGGGGAGTACCACACCCTAGCCGCCTT
CGAGTCTGACGTGATGCTTCTCTTCGACAACGCGCGCGAGTACAACGTCG
AGGGGTCTCTGGTGTACCAGGTGAGTACGTCATCTTCGTCGTCATAA
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