mRNA_Ecto-sp8_S_contig9446.30971.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9446.30971.1
Unique NamemRNA_Ecto-sp8_S_contig9446.30971.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9446.30971.1 vs. uniprot
Match: A0A6H5JCB9_9PHAE (ENTH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCB9_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 3.590e-53
Identity = 130/172 (75.58%), Postives = 135/172 (78.49%), Query Frame = 1 
Query:    1 MSLLLLLSVCTAASKGLPRSTRRGSMPRSLAKGDAPPVPPTLDKEFSCCSSSGCSAREEGDRMTSTSSRNAPAESEDGRKSRXXXXXXXXXXXXRGASPSSAGVAGAPRXXXXXXXET-AAGTPSRGPSRQRRQHPAAPSASGNHRGGDSGLDLDTDSSFEYDDLDDVWSDE 513
            M LL+LLSVCTAASKGLPRST RGSMP SLAKGDAP VPP LD+E S CSSSGCSAR  GDR T TSSRN PAESEDGRKSR     XXXXXXX               XXXXXXX   AAG PSRGPSRQRRQHPA PSASG+HRGGDSG+DLDTDSSFEYDDLD+VWSDE
Sbjct:   11 MGLLVLLSVCTAASKGLPRSTSRGSMPCSLAKGDAPLVPPALDEETSFCSSSGCSARGGGDRATPTSSRNTPAESEDGRKSRRKSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKPSRGPSRQRRQHPAVPSASGDHRGGDSGMDLDTDSSFEYDDLDNVWSDE 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9446.30971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCB9_9PHAE3.590e-5375.58ENTH domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9446contigEcto-sp8_S_contig9446:2..1855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score213.4
Seed ortholog evalue8.5e-53
Seed eggNOG ortholog2880.D7FQ31
Model size519
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2ECB5@1,2SI7J@2759
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-01_007660.1
Cds size519
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145302.2323961-CDS-Ecto-sp8_S_contig9446:1..4231681145302.2323961-CDS-Ecto-sp8_S_contig9446:1..423Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9446 2..423 -
1681145302.243724-CDS-Ecto-sp8_S_contig9446:734..7851681145302.243724-CDS-Ecto-sp8_S_contig9446:734..785Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9446 735..785 -
1681145302.2536805-CDS-Ecto-sp8_S_contig9446:1809..18551681145302.2536805-CDS-Ecto-sp8_S_contig9446:1809..1855Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9446 1810..1855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9446.30971.1prot_Ecto-sp8_S_contig9446.30971.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9446 2..1855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9446.30971.1

>prot_Ecto-sp8_S_contig9446.30971.1 ID=prot_Ecto-sp8_S_contig9446.30971.1|Name=mRNA_Ecto-sp8_S_contig9446.30971.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp
MSLLLLLSVCTAASKGLPRSTRRGSMPRSLAKGDAPPVPPTLDKEFSCCS
SSGCSAREEGDRMTSTSSRNAPAESEDGRKSRRKPATTTTTTKTRGASPS
SAGVAGAPRAAAAAAAETAAGTPSRGPSRQRRQHPAAPSASGNHRGGDSG
LDLDTDSSFEYDDLDDVWSDEED
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mRNA from alignment at Ecto-sp8_S_contig9446:2..1855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9446.30971.1 ID=mRNA_Ecto-sp8_S_contig9446.30971.1|Name=mRNA_Ecto-sp8_S_contig9446.30971.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1854bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9446:2..1855- (Ectocarpus species8 EcLAC_412)
ATGAGCCTCCTCCTTCTTCTTTCTGTCTGCACAGCGGCGTCGAAAGGTGA
GGAGCGAGGCTGCATCAGCAGCAACGATCGCATCCAGTTTTTGTTGCTTG
TCTCTCGAGGCCTCCACGCGGCACGGCAGCGGCAGGTACAGCGGTACATA
CATCGACGGTTTAGGCGGAGACTGGTAATTTGGGGCTGTCTTGGGGATCA
TGCCCTCTCGCGCGCTTCTGGAAAGCTCTTCTATTTATAACCAGGGTGAA
TCTGCGTGAGCATGCAACGCAGCCACGCGTCACCCATGCTGTACCCCAAC
GCGCGGGCAGCGTATCTTTTTTGGGGACCCCAAAAGCCTGCTGTTGCGGC
AGCGCCACCTAAAGCTGTCAGTCTACATGTATCGTTGTAGACCCGCCAAA
TTGGAAGCAGTAGAGCCAAATGTCAGAGGAGGTGCTCCGAGGGGGGTTGG
TCCCCACTACCGGGAACAGAGCAGATGTGACCTGACCTTCGTTTGTTTTT
TGTGACATGTACCCATCATGCCATGTATGCATGCTACACATGTTTTGGAG
TGGCTTCAAAAAATTAATCATTCCGTATCCAATGCCCTGCGGAGTACTGT
AGTTTGTAGTCTACGGATCGAAGGTGCACCACTGCTGTGCTGTGTTGCAC
CACCGTGCGACAAAGCGGCGAACGATTCTTAGCTGCATTCACGAACGGGG
ATCGGAGAGAGTTTTTTCTCTTGTCCTCTAGCTCTGGAATACCTCTCTCT
CGCTTGTGCCGAAGTCGGAGAACGGTTTCCACGTCATGTGACAGCAGCAG
TCTACAGGAGACGAGCAGCGCACGACAAGACGCCGAAGGGGAACCCACCG
CTCCAACCCGGAAGCTTTGTGCATGGCTTGTGTGCATGGTTTCGCGTTTA
CCCCTTGGGGCAGCAGCAGTCTATATGCTCCCCGCTAAGGCTGGCGCATC
TCTATCGCCCCGTATCCCTACCTACACCACACAACTGCCTGTTACCCACA
ACCATGGCCCTTTTTACCCTACGCCTTGCCGTTGCCTGTCTTCAACAACC
GGTGGCACACCCGCCGGCAGGGCTACCTCGGAGCACGAGAAGAGGATCCA
TGCCACGCAGTCTCGCGAAAGGTAAGATGCGGTGGTGAAAGCCAAACCCC
CAACATGGTTTGGGTTCACGGTACGTCGCCTGTCGTCTTTTAGCGTTGTC
TGCGCGCCCCTCCACTACTGTTACCATGTGTTGCAACCCTAAATTAGCGC
CGGGGTCAGGTTAGGTTCTGTCTGTCGTCGAGAAACATGATCGGCAAGCA
GCGACCGGTAAATACCCGCCCGTTCGCCCCCCTGTACAATCCAAGACATG
TCACACTAATCGCTCGCTGCCAGCGCGCACTTTCTTCTCCCTCCGGAGTA
AAACCGTCTGACTGTTTTTTGTTTGTGTGCAGGTGACGCCCCTCCCGTCC
CACCTACATTAGACAAAGAATTTTCTTGCTGCAGCAGTAGCGGATGCAGC
GCCAGAGAGGAGGGAGACCGGATGACGTCAACCTCTTCCCGCAACGCACC
CGCAGAAAGCGAAGACGGCCGGAAGAGCAGGCGAAAGCCCGCAACGACGA
CAACCACCACGAAAACGCGCGGTGCCTCTCCAAGCAGCGCAGGCGTCGCG
GGAGCACCAAGAGCGGCGGCAGCGGCGGCGGCGGAAACCGCAGCGGGGAC
ACCGTCGCGCGGGCCGTCGCGGCAACGGCGGCAGCATCCGGCCGCGCCAT
CAGCCTCTGGAAACCACCGGGGCGGTGACTCGGGCTTGGACTTGGACACG
GACAGCAGCTTCGAGTACGATGACTTGGATGACGTGTGGTCGGACGAGGA
GGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9446:2..1855-

>mRNA_Ecto-sp8_S_contig9446.30971.1 ID=mRNA_Ecto-sp8_S_contig9446.30971.1|Name=mRNA_Ecto-sp8_S_contig9446.30971.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9446:2..1855- (Ectocarpus species8 EcLAC_412)
ATGAGCCTCCTCCTTCTTCTTTCTGTCTGCACAGCGGCGTCGAAAGGGCT
ACCTCGGAGCACGAGAAGAGGATCCATGCCACGCAGTCTCGCGAAAGGTG
ACGCCCCTCCCGTCCCACCTACATTAGACAAAGAATTTTCTTGCTGCAGC
AGTAGCGGATGCAGCGCCAGAGAGGAGGGAGACCGGATGACGTCAACCTC
TTCCCGCAACGCACCCGCAGAAAGCGAAGACGGCCGGAAGAGCAGGCGAA
AGCCCGCAACGACGACAACCACCACGAAAACGCGCGGTGCCTCTCCAAGC
AGCGCAGGCGTCGCGGGAGCACCAAGAGCGGCGGCAGCGGCGGCGGCGGA
AACCGCAGCGGGGACACCGTCGCGCGGGCCGTCGCGGCAACGGCGGCAGC
ATCCGGCCGCGCCATCAGCCTCTGGAAACCACCGGGGCGGTGACTCGGGC
TTGGACTTGGACACGGACAGCAGCTTCGAGTACGATGACTTGGATGACGT
GTGGTCGGACGAGGAGGAC
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