mRNA_Ecto-sp8_S_contig94031.30909.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94031.30909.1
Unique NamemRNA_Ecto-sp8_S_contig94031.30909.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94031.30909.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.050e-16
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   55 SAYVKLSHPDVRTVYMIGEEGLEEELEMVGLRVVKEEARPAP 180
            +AYVKLSHPDV+TVYMIGEEGLEEELEMVGLRVVKEEARPAP
Sbjct:  104 AAYVKLSHPDVQTVYMIGEEGLEEELEMVGLRVVKEEARPAP 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94031.30909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G934_ECTSI1.050e-1695.24Haloacid dehalogenase-like hydrolase family protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94031contigEcto-sp8_S_contig94031:65..244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score81.3
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D7G934
Model size180
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.phosphoglycolate phosphatase activity
EggNOG OGsCOG0647@1,KOG2882@2759
EC3.1.3.18,3.1.3.41,3.1.3.48
Cds size180
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.554994-CDS-Ecto-sp8_S_contig94031:64..2441681145297.554994-CDS-Ecto-sp8_S_contig94031:64..244Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94031 65..244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94031.30909.1prot_Ecto-sp8_S_contig94031.30909.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94031 65..244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94031.30909.1

>prot_Ecto-sp8_S_contig94031.30909.1 ID=prot_Ecto-sp8_S_contig94031.30909.1|Name=mRNA_Ecto-sp8_S_contig94031.30909.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=60bp
MQTRLSFLLLIVFVARCCSAYVKLSHPDVRTVYMIGEEGLEEELEMVGLR
VVKEEARPAP
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mRNA from alignment at Ecto-sp8_S_contig94031:65..244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94031.30909.1 ID=mRNA_Ecto-sp8_S_contig94031.30909.1|Name=mRNA_Ecto-sp8_S_contig94031.30909.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94031:65..244- (Ectocarpus species8 EcLAC_412)
ATGCAAACAAGGCTCTCATTCCTCCTCTTGATCGTGTTTGTTGCACGTTG
TTGTTCAGCCTACGTTAAGCTCTCTCACCCGGATGTACGGACCGTGTACA
TGATCGGGGAGGAGGGGCTCGAAGAGGAGCTTGAGATGGTCGGGCTGAGG
GTCGTCAAGGAGGAGGCGAGGCCAGCTCCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94031:65..244-

>mRNA_Ecto-sp8_S_contig94031.30909.1 ID=mRNA_Ecto-sp8_S_contig94031.30909.1|Name=mRNA_Ecto-sp8_S_contig94031.30909.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94031:65..244- (Ectocarpus species8 EcLAC_412)
ATGCAAACAAGGCTCTCATTCCTCCTCTTGATCGTGTTTGTTGCACGTTG
TTGTTCAGCCTACGTTAAGCTCTCTCACCCGGATGTACGGACCGTGTACA
TGATCGGGGAGGAGGGGCTCGAAGAGGAGCTTGAGATGGTCGGGCTGAGG
GTCGTCAAGGAGGAGGCGAGGCCAGCTCCG
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