mRNA_Ecto-sp8_S_contig91483.30475.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig91483.30475.1
Unique NamemRNA_Ecto-sp8_S_contig91483.30475.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: D7FL41_ECTSI (WD40 repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL41_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.050e-37
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSPGGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWD 222
            IQSLSMATNASVLVGANNKGTVFVFSPGGDTK+  FKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWD
Sbjct:  163 IQSLSMATNASVLVGANNKGTVFVFSPGGDTKS--FKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWD 234          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A0A836C989_9STRA (WD40 repeat-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C989_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.160e-18
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSPGGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTK-TWTHQRTL 252
            IQS+S AT+ASV+V A + G VFVF PG D   R +   +  KAH+ YLLKCVLSPNV +LVTT +DKT KVW+    W  ++TL
Sbjct:  163 IQSISAATDASVIVAAGSHGRVFVFEPGRD--GRSYALASHFKAHEGYLLKCVLSPNVRQLVTTGSDKTAKVWNVGGNWPLEKTL 245          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A0A7S3H1Y8_9STRA (Target of rapamycin complex subunit LST8 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1Y8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.330e-16
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSPGGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTKTWTHQRTL 252
            I+S+S+A +AS +   ++KG VFV++P  +   +G   T + +AH+ YLLKCV+SP++  + TTSADKT+K+W+T +W  + TL
Sbjct:  165 IRSISIAYDASFIAAGSHKGRVFVYTPDAE---KGLVLTKDYQAHEDYLLKCVISPDLRSIATTSADKTIKLWETSSWNLETTL 245          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A0A075AZE2_ROZAC (WD repeat-containing protein wat1 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AZE2_ROZAC)

HSP 1 Score: 78.6 bits (192), Expect = 1.300e-15
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSPGGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTKTWTHQRTLV 255
            +  +S+A++ S LV ANN G  FV+       +   +    I AHDTY+ KCVLSP+V+KL T+SAD T+K+W T ++ H++TLV
Sbjct:  138 VNCVSVASDGSFLVAANNHGYCFVWKMSNGQDSTDLQPITRIHAHDTYVTKCVLSPDVKKLATSSADGTIKIWATDSFLHEKTLV 222          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A0A7S3VMH4_DUNTE (Target of rapamycin complex subunit LST8 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VMH4_DUNTE)

HSP 1 Score: 77.0 bits (188), Expect = 6.970e-15
Identity = 36/86 (41.86%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSP-GGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTKTWTHQRTLV 255
            ++SL++A + +++V ANN GT +V+    G   +  F+  ++++AH TY+LKC++SP+ ++L TTSADKT+K+W+ +T+T  RTL+
Sbjct:  163 VRSLTVALDGTMIVAANNNGTCYVWRMMRGGAHSTHFEPLHKLRAHPTYILKCLISPDSQQLATTSADKTIKLWNLETFTLDRTLL 248          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A0A059LPD8_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LPD8_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 9.620e-14
Identity = 37/85 (43.53%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSP-GGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTKTWTHQRTL 252
            ++SL++A ++S+LV +NN GT +++    G   +  F+  +++KAH  ++LKC+LSP+V +L TTSADKTVK+W+   +T  RTL
Sbjct:  221 VRSLTVAVDSSLLVASNNSGTCYIWRALRGTYHSTHFEPLHKLKAHQGFVLKCLLSPDVRQLATTSADKTVKIWNLDGFTLDRTL 305          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A0A6A7G6M2_9CRUS (WD40 repeat-like superfamily protein n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G6M2_9CRUS)

HSP 1 Score: 72.8 bits (177), Expect = 2.390e-13
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSPGGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVW 219
            I+S+++A++ S++V ANN+GT+FV+      +   F+  ++I AH TY LKCVLSP+ + L TTSADKT+K+W
Sbjct:  164 IRSVTIASDGSIVVAANNRGTIFVWKTKNGAQ---FEPVHKIDAHSTYCLKCVLSPDCKYLATTSADKTIKLW 233          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: E1ZL40_CHLVA (Target of rapamycin complex subunit LST8 n=3 Tax=Chlorella clade TaxID=2511126 RepID=E1ZL40_CHLVA)

HSP 1 Score: 72.4 bits (176), Expect = 3.520e-13
Identity = 37/85 (43.53%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVF-SPGGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTKTWTHQRTL 252
            ++SL++A + S++V ANN GT +V+ +  G      F+  ++++AH  Y+LKC+LSP+V +L TTS+DKTVK+W+   +T  RTL
Sbjct:  164 VRSLTVAMDGSLVVAANNSGTCYVWRAMRGSYLTTHFEPLHKLRAHQGYVLKCMLSPDVRQLATTSSDKTVKLWNLDGFTLDRTL 248          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A8JDD2_CHLRE (Target of rapamycin complex subunit LST8 n=9 Tax=Chlamydomonadales TaxID=3042 RepID=A8JDD2_CHLRE)

HSP 1 Score: 71.2 bits (173), Expect = 9.460e-13
Identity = 36/86 (41.86%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSP-GGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTKTWTHQRTLV 255
            ++SL++A + +++V ANN GT +V+    G +    F+  +++KAH   +LKC++SP+ ++L TTSADKTVK+W+   +T  RTLV
Sbjct:  165 VRSLTVALDGTMIVAANNNGTCYVWRMMRGASLTTHFEPLHKLKAHSNIILKCLISPDCQQLATTSADKTVKLWNLDGFTLDRTLV 250          
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Match: A0A8H7PTJ5_9FUNG (Target of rapamycin complex subunit LST8 n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7PTJ5_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 3.900e-12
Identity = 34/87 (39.08%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 IQSLSMATNASVLVGANNKGTVFVFSPGGDTKARGFKKTNEIKAHDTYLLKCVLSPNVEKLVTTSADKTVKVWDTKT--WTHQRTLV 255
            ++S+++A++ S+LV ANNKG  +V+      ++   K   ++ AH+ Y+ +C+LSP+ + L T SADKTVK+W+T+   +T ++TLV
Sbjct:  192 LRSVTVASDGSMLVAANNKGNCYVWQLPKGNESSDLKPITKLNAHNEYITRCLLSPDTKHLATCSADKTVKIWNTENGKFTLEKTLV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig91483.30475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL41_ECTSI1.050e-3795.95WD40 repeat containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C989_9STRA1.160e-1855.29WD40 repeat-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3H1Y8_9STRA3.330e-1644.05Target of rapamycin complex subunit LST8 n=1 Tax=S... [more]
A0A075AZE2_ROZAC1.300e-1544.71WD repeat-containing protein wat1 n=1 Tax=Rozella ... [more]
A0A7S3VMH4_DUNTE6.970e-1541.86Target of rapamycin complex subunit LST8 n=1 Tax=D... [more]
A0A059LPD8_9CHLO9.620e-1443.53Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
A0A6A7G6M2_9CRUS2.390e-1347.95WD40 repeat-like superfamily protein n=1 Tax=Hiron... [more]
E1ZL40_CHLVA3.520e-1343.53Target of rapamycin complex subunit LST8 n=3 Tax=C... [more]
A8JDD2_CHLRE9.460e-1341.86Target of rapamycin complex subunit LST8 n=9 Tax=C... [more]
A0A8H7PTJ5_9FUNG3.900e-1239.08Target of rapamycin complex subunit LST8 n=2 Tax=U... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig91483contigEcto-sp8_S_contig91483:47..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score128.6
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog2880.D7FL41
Preferred nameMLST8
Model size255
KEGG koko:K08266
KEGG Pathwayko04136,ko04138,ko04140,ko04150,ko04151,ko04714,map04136,map04138,map04140,map04150,map04151,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001558,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005829,GO:0005886,GO:0006355,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007190,GO:0007492,GO:0007498,GO:0008047,GO:0008064,GO:0008104,GO:0008150,GO:0008361,GO:0009267,GO:0009605,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010468,GO:0010506,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016043,GO:0016241,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019897,GO:0019898,GO:0022402,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030100,GO:0030234,GO:0030295,GO:0030587,GO:0030832,GO:0030833,GO:0030838,GO:0030950,GO:0030952,GO:0031090,GO:0031152,GO:0031234,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031334,GO:0031399,GO:0031401,GO:0031410,GO:0031505,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0031930,GO:0031931,GO:0031932,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032502,GO:0032535,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0033674,GO:0034399,GO:0034504,GO:0034613,GO:0035556,GO:0038201,GO:0038202,GO:0038203,GO:0040008,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043327,GO:0043519,GO:0043520,GO:0043539,GO:0043549,GO:0044087,GO:0044089,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045229,GO:0045786,GO:0045793,GO:0045806,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0046626,GO:0046628,GO:0048382,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0050730,GO:0050731,GO:0050764,GO:0050765,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051336,GO:0051338,GO:0051347,GO:0051493,GO:0051495,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051896,GO:0051897,GO:0060255,GO:0060627,GO:0061586,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071496,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090702,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098630,GO:0098743,GO:0098772,GO:0098791,GO:0098805,GO:0099120,GO:0110053,GO:1900034,GO:1900076,GO:1900078,GO:1902531,GO:1902533,GO:1902680,GO:1902903,GO:1902905,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.TOR signaling
EggNOG OGsKOG0315@1,KOG0315@2759
Cds size240
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145264.540931-CDS-Ecto-sp8_S_contig91483:46..1971681145264.540931-CDS-Ecto-sp8_S_contig91483:46..197Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig91483 47..197 -
1681145264.556058-CDS-Ecto-sp8_S_contig91483:502..5911681145264.556058-CDS-Ecto-sp8_S_contig91483:502..591Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig91483 503..591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145264.5686743-UTR-Ecto-sp8_S_contig91483:591..6061681145264.5686743-UTR-Ecto-sp8_S_contig91483:591..606Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig91483 592..606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig91483.30475.1prot_Ecto-sp8_S_contig91483.30475.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig91483 47..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig91483.30475.1

>prot_Ecto-sp8_S_contig91483.30475.1 ID=prot_Ecto-sp8_S_contig91483.30475.1|Name=mRNA_Ecto-sp8_S_contig91483.30475.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=80bp
MATNASVLVGANNKGTVFVFSPGGDTKARGFKKTNEIKAHDTYLLKCVLS
PNVEKLVTTSADKTVKVWDTKTWTHQRTLV
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mRNA from alignment at Ecto-sp8_S_contig91483:47..606-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig91483.30475.1 ID=mRNA_Ecto-sp8_S_contig91483.30475.1|Name=mRNA_Ecto-sp8_S_contig91483.30475.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=560bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91483:47..606- (Ectocarpus species8 EcLAC_412)
ATCCAGAGCTTGTCCATGGCAACAAACGCCTCCGTTCTCGTGGGTGCCAA CAACAAGGGGACCGTCTTCGTATTCTCCCCGGGGGGTGACACGAAGGCGA GAGGGTATTGGTTTTTGCCGCATTTTGTTGTGCCGCATTGGAGGCTGCGG AACCACCCGATGGACATGCCTTCCAGGCTTTAGGCGGCGGTCCTTATCTC CGCGCCAACGTGTGCAACGTGCGTACCGACATATTTCTCTTGTTGCCGAG TAGAGCAAACTAGTGCATAGTGTGCCGCGAGAGCACGCGCTCAACCCTGC TTTAAGTTTATTCATTCGGGTATGTCGGTAAAATGGAACAACTATTTTTT TATTCACGTGCATGTTGAAGAGAATAGTGCCCCGCCGTCTCTCCCTTTGT CTACCAGAGCTTCAAGAAGACCAACGAGATCAAGGCGCACGACACGTACC TGCTCAAGTGCGTGCTCAGCCCGAACGTGGAGAAGCTGGTGACGACCTCA GCAGACAAGACTGTCAAGGTCTGGGATACCAAGACGTGGACCCACCAACG AACCCTCGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig91483:47..606-

>mRNA_Ecto-sp8_S_contig91483.30475.1 ID=mRNA_Ecto-sp8_S_contig91483.30475.1|Name=mRNA_Ecto-sp8_S_contig91483.30475.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91483:47..606- (Ectocarpus species8 EcLAC_412)
ATGGCAACAAACGCCTCCGTTCTCGTGGGTGCCAACAACAAGGGGACCGT
CTTCGTATTCTCCCCGGGGGGTGACACGAAGGCGAGAGGCTTCAAGAAGA
CCAACGAGATCAAGGCGCACGACACGTACCTGCTCAAGTGCGTGCTCAGC
CCGAACGTGGAGAAGCTGGTGACGACCTCAGCAGACAAGACTGTCAAGGT
CTGGGATACCAAGACGTGGACCCACCAACGAACCCTCGTG
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